genome.fa.s223.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  177  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29654974--29654998	6	4.2	6	100	0	50	68	0	0	32	0.90
29657462--29657503	16	2.6	16	81	11	50	50	11	7	30	1.66
29657781--29657878	40	2.6	39	76	15	98	43	0	1	55	1.06
29663248--29663317	13	5.8	13	79	12	69	64	0	1	34	1.03
29663256--29663317	24	2.6	24	86	0	88	66	0	1	32	1.02
29663256--29663316	11	5.2	11	77	13	59	67	0	1	31	1.01
29665704--29665728	1	25.0	1	100	0	50	100	0	0	0	0.00
29668444--29668538	42	2.3	42	81	3	111	28	44	4	23	1.72
29668468--29668618	42	3.6	42	75	3	142	27	46	4	21	1.71
29670226--29670255	15	1.9	16	93	6	53	10	6	3	80	1.01
29670614--29670656	12	3.2	13	87	12	52	34	0	0	65	0.93
29670623--29670666	12	3.7	12	85	14	56	36	0	0	63	0.95
29675360--29675405	21	2.2	21	80	3	58	60	4	4	30	1.35
29675521--29675636	30	4.0	30	79	3	121	53	0	3	42	1.23
29677586--29677658	36	2.0	37	86	2	103	46	1	4	47	1.30
29677782--29677868	40	2.2	40	83	2	104	37	9	5	47	1.60
29683735--29683929	64	3.1	61	72	10	144	32	10	10	46	1.71
29684770--29684813	20	2.3	18	76	7	52	38	6	0	54	1.27
29685379--29685403	12	2.1	12	100	0	50	24	24	24	28	2.00
29687158--29687221	29	2.2	30	88	8	96	39	0	7	53	1.30
29688193--29688218	12	2.2	12	100	0	52	42	0	0	57	0.98
29688453--29688509	26	2.1	27	81	9	64	59	3	1	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29692694--29692764	21	3.3	22	78	11	76	53	0	0	46	1.00
29692934--29692973	20	2.0	21	90	5	64	45	0	0	55	0.99
29694538--29694563	3	8.7	3	100	0	52	34	0	0	65	0.93
29695923--29695948	12	2.2	12	100	0	52	76	23	0	0	0.78
29698893--29698946	3	18.0	3	76	0	54	29	29	35	5	1.80
29698893--29698946	18	3.0	18	80	0	63	29	29	35	5	1.80
29702370--29702401	2	16.0	2	100	0	64	50	50	0	0	1.00
29702553--29702596	22	2.0	22	86	0	61	43	15	18	22	1.88
29702711--29702943	18	12.8	18	70	22	118	57	0	1	40	1.13
29702732--29702963	15	14.9	15	69	21	122	56	0	1	40	1.13
29702711--29702977	64	3.9	68	75	17	223	57	0	1	39	1.15
29702741--29702959	59	3.7	60	77	14	188	56	0	1	41	1.14
29702741--29702954	61	3.5	60	77	18	182	56	0	1	41	1.14
29702923--29702977	23	2.4	23	84	6	58	60	0	3	36	1.15
29702979--29703068	15	5.6	16	74	11	58	41	0	1	57	1.06
29702991--29703068	33	2.4	32	85	10	97	43	0	0	56	0.99
29702992--29703068	32	2.4	33	85	10	97	44	0	0	55	0.99
29706626--29706671	12	3.8	12	97	0	83	54	8	0	36	1.32
29706600--29706671	24	2.9	25	83	6	85	51	9	1	37	1.44
29710387--29710424	15	2.5	15	91	0	67	10	68	7	13	1.39
29712544--29712585	17	2.6	17	81	7	52	35	0	0	64	0.94
29723284--29723344	29	2.1	30	81	9	72	32	6	3	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29728320--29728411	47	2.0	44	84	14	116	39	1	6	53	1.34
29729435--29729486	22	2.3	22	81	18	63	57	0	0	42	0.98
29729433--29729487	24	2.3	25	76	23	64	60	0	0	40	0.97
29729531--29729581	20	2.7	19	88	8	77	43	0	0	56	0.99
29731313--29731562	128	2.0	121	86	5	338	22	24	20	32	1.98
29747317--29747345	13	2.1	14	93	6	51	0	17	0	82	0.66
29748062--29748106	24	2.0	22	82	8	54	40	2	0	57	1.11
29751537--29751568	2	16.5	2	93	6	57	50	0	0	50	1.00
29756606--29756677	21	3.5	20	83	9	90	47	1	0	51	1.09
29759281--29759330	16	3.4	16	72	27	56	60	0	0	40	0.97
29768592--29768640	20	2.3	21	83	13	57	59	2	4	34	1.28
29778594--29778684	46	2.0	46	93	4	159	27	9	13	49	1.73
29779727--29779765	15	2.6	15	100	0	78	64	20	7	7	1.45
29781693--29781738	10	4.3	10	83	10	56	63	0	0	36	0.95
29781686--29781739	21	2.4	23	84	9	76	61	0	0	38	0.96
29781698--29781748	22	2.4	21	83	9	59	60	1	0	37	1.08
29781897--29781932	17	2.1	17	100	0	72	36	22	0	41	1.54
29785441--29785482	17	2.4	18	80	7	52	40	2	0	57	1.12
29786082--29786221	58	2.4	58	79	4	156	35	13	20	30	1.91
29788010--29788079	18	3.3	20	72	25	56	57	1	1	40	1.17
29788044--29788094	24	2.2	24	82	3	59	58	1	1	37	1.20
29788927--29788987	26	2.5	25	86	7	81	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29788927--29788987	12	4.9	12	75	15	61	49	0	0	50	1.00
29789791--29789836	23	2.0	23	83	8	58	78	2	10	8	1.05
29794180--29794285	53	2.0	53	86	0	149	38	9	11	40	1.74
29794255--29794428	63	2.7	64	71	16	171	41	9	8	40	1.67
29796403--29796447	21	2.1	21	84	8	56	26	2	6	64	1.30
29798172--29798792	310	2.0	310	94	0	1080	27	21	13	37	1.91
29804468--29804506	2	20.0	2	94	5	71	51	0	0	48	1.00
29812791--29812997	70	3.0	70	92	1	328	26	13	31	28	1.93
29826904--29826951	19	2.5	19	84	15	64	54	6	12	27	1.61
29827598--29827636	13	3.2	13	85	10	55	33	2	0	64	1.08
29833715--29833760	24	1.9	24	86	0	65	26	21	30	21	1.99
29835164--29835227	28	2.2	29	84	13	80	40	1	0	57	1.08
29835164--29835205	15	3.0	14	76	10	50	40	0	0	59	0.97
29835754--29835844	31	2.9	31	77	6	78	49	0	1	49	1.08
29835876--29835938	29	2.2	27	75	8	63	46	0	1	52	1.10
29835909--29835960	16	3.1	17	84	15	56	51	0	0	48	1.00
29836069--29836115	18	2.7	18	76	3	51	48	0	6	44	1.28
29843177--29843209	11	3.3	10	88	12	50	81	3	0	15	0.80
29843171--29843216	19	2.5	18	86	6	65	76	4	0	19	0.96
29846878--29846948	30	2.3	30	80	7	81	50	1	0	47	1.09
29851250--29851289	19	2.0	20	85	4	55	47	0	0	52	1.00
29859524--29859606	19	4.0	20	74	21	73	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29859520--29859578	19	3.0	20	82	12	77	54	0	0	45	0.99
29859562--29859600	16	2.5	16	87	4	62	58	0	0	41	0.98
29859540--29859590	22	2.3	22	77	16	61	58	0	0	41	0.98
29859564--29859610	24	2.0	24	84	15	64	61	0	0	38	0.96
29860702--29860759	23	2.6	23	78	8	66	31	5	13	50	1.64
29860708--29860760	23	2.3	23	90	0	79	26	5	13	54	1.60
29863585--29863641	24	2.3	25	85	8	73	21	7	15	56	1.63
29864691--29864817	52	2.4	52	88	2	175	45	10	19	24	1.81
29864691--29864833	52	2.8	52	86	2	171	44	9	21	24	1.82
29865357--29865431	25	3.0	25	75	11	73	48	9	24	18	1.77
29865413--29865473	25	2.5	25	84	10	81	37	8	34	19	1.82
29865417--29865465	24	2.0	24	88	7	73	36	10	34	18	1.85
29865717--29865747	11	2.8	11	100	0	62	19	0	29	51	1.47
29865772--29865928	52	3.0	52	85	3	183	42	8	22	25	1.83
29870604--29870654	15	3.5	15	86	10	79	56	0	0	43	0.99
29870609--29870678	28	2.8	25	81	16	90	55	0	1	42	1.08
29870610--29870679	25	2.7	26	76	14	74	57	0	1	41	1.08
29870713--29870750	19	2.0	19	85	10	51	47	2	0	50	1.15
29870759--29870800	16	2.7	16	85	3	50	50	4	0	45	1.23
29870765--29870834	25	2.8	24	81	16	79	48	2	0	48	1.16
29870772--29870834	26	2.5	26	87	5	85	49	3	0	47	1.17
29870725--29870827	15	6.6	16	67	25	60	49	1	0	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29870849--29870879	16	1.9	16	93	0	53	61	3	0	35	1.12
29871315--29871390	28	2.7	28	78	13	86	61	0	1	36	1.04
29871622--29871656	16	2.1	17	89	5	54	65	2	8	22	1.34
29876350--29876634	140	2.0	140	100	0	570	23	14	16	45	1.84
29879584--29879652	19	3.8	18	80	14	79	44	0	0	55	0.99
29879603--29879673	23	3.1	24	77	20	80	43	0	0	56	0.99
29879584--29879673	37	2.4	37	83	1	99	44	0	0	55	0.99
29880082--29880122	7	6.1	7	85	5	50	75	14	9	0	1.04
29880075--29880119	13	3.4	13	78	6	54	80	11	6	2	0.99
29881589--29881681	45	2.1	45	93	0	159	39	33	20	6	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190