genome.fa.s223.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  146  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23732583--23732625	21	2.0	22	86	4	61	51	2	2	44	1.27
23735923--23736001	20	3.8	20	69	14	54	45	10	10	34	1.72
23737231--23737258	14	2.0	14	100	0	56	50	28	0	21	1.49
23737471--23737728	137	1.9	140	80	5	310	34	14	15	35	1.88
23747424--23747502	39	2.0	41	85	5	108	30	18	13	36	1.90
23747599--23747652	18	3.0	18	83	0	72	22	22	12	42	1.87
23748438--23748748	35	8.9	35	70	8	179	20	16	11	51	1.75
23748362--23748850	70	7.0	69	74	8	341	20	16	10	51	1.73
23748454--23748640	104	1.8	103	82	3	241	19	15	12	51	1.75
23748651--23748771	35	3.5	35	71	4	100	22	18	9	50	1.74
23748682--23748794	35	3.3	35	75	8	124	22	15	9	52	1.72
23748893--23748972	35	2.3	35	84	4	99	18	17	11	52	1.74
23749104--23749211	35	3.1	34	68	21	80	20	13	13	51	1.75
23749048--23750437	70	19.8	70	71	10	296	20	16	12	50	1.77
23749347--23749516	69	2.4	70	84	2	218	20	13	12	54	1.71
23749577--23749657	35	2.3	35	82	0	99	18	22	12	46	1.82
23749486--23749657	69	2.5	70	77	3	168	19	18	11	51	1.76
23749660--23749761	35	2.9	35	76	0	114	21	19	11	47	1.81
23749927--23750024	35	2.9	34	75	3	90	21	16	9	53	1.70
23749451--23750351	494	1.8	491	79	4	1035	20	16	12	49	1.78
23750158--23750243	35	2.5	35	78	0	109	22	13	11	52	1.73
23750316--23750437	35	3.5	35	78	3	120	18	13	14	54	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23750345--23750528	35	5.3	35	70	12	121	17	14	13	53	1.72
23750155--23750542	70	5.6	69	74	9	270	19	15	12	52	1.75
23750749--23750797	13	3.9	12	84	7	62	87	8	2	2	0.69
23750748--23750797	15	3.4	14	82	17	57	88	8	2	2	0.68
23751244--23751758	145	3.6	146	75	9	403	32	13	12	42	1.80
23751218--23751758	290	1.9	288	82	4	678	33	12	11	41	1.80
23752191--23752277	45	1.9	46	97	2	167	36	10	32	20	1.87
23754215--23754242	2	14.0	2	100	0	56	50	0	0	50	1.00
23759867--23760026	80	2.0	81	82	2	196	35	22	11	30	1.90
23760296--23760321	12	2.2	12	100	0	52	23	34	7	34	1.83
23760504--23760552	24	2.0	24	96	0	89	32	18	8	40	1.80
23760648--23760702	18	3.1	18	81	0	74	21	18	18	41	1.90
23761395--23761648	35	7.3	35	67	5	118	21	17	12	48	1.80
23761373--23761883	70	7.3	69	72	10	324	20	15	12	51	1.75
23761386--23761900	140	3.7	138	77	5	419	20	15	12	50	1.76
23761684--23761819	35	3.9	35	74	3	121	19	11	14	54	1.70
23761846--23761985	69	2.0	69	81	1	163	19	22	11	46	1.82
23762051--23762141	47	1.9	47	84	0	119	20	16	8	53	1.69
23762130--23762507	70	5.4	71	74	8	224	20	17	11	50	1.77
23762130--23762509	140	2.7	138	75	8	392	20	17	11	49	1.78
23762394--23762542	70	2.1	70	81	4	167	20	18	11	48	1.79
23762697--23762996	70	4.3	71	77	5	225	23	16	11	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23762909--23762964	17	3.1	19	72	12	55	25	10	7	57	1.58
23762901--23762997	35	2.7	35	78	9	90	22	13	9	54	1.67
23763122--23763413	70	4.2	70	77	5	270	21	16	13	49	1.78
23763120--23763207	35	2.5	35	81	0	104	23	12	12	51	1.74
23763154--23763413	70	3.7	69	79	5	274	20	16	13	50	1.77
23763140--23763412	138	2.0	141	82	3	338	20	16	12	50	1.77
23763518--23763649	34	3.9	33	78	11	108	15	15	16	53	1.74
23763734--23763776	6	7.3	6	89	5	61	86	11	2	0	0.67
23764253--23764725	144	3.3	142	77	10	457	32	13	12	41	1.81
23766067--23766097	16	1.9	16	93	0	53	32	0	9	58	1.31
23771460--23771590	59	2.2	58	81	8	149	54	16	4	23	1.60
23773794--23773837	18	2.4	18	85	7	54	15	4	4	75	1.14
23774884--23774950	22	3.2	21	70	14	57	10	10	14	64	1.50
23786658--23786691	18	1.9	17	88	5	50	8	0	5	85	0.75
23787878--23787925	22	2.2	22	88	0	69	25	2	0	72	0.95
23788165--23788228	22	3.1	21	75	6	51	70	3	1	25	1.11
23789305--23789349	3	15.0	3	100	0	90	66	0	0	33	0.92
23789682--23789715	2	17.0	2	100	0	68	50	0	0	50	1.00
23794913--23794968	27	2.1	27	86	0	76	35	26	12	25	1.91
23801243--23801276	15	2.3	15	94	0	59	32	11	17	38	1.86
23802553--23802647	30	3.2	30	76	0	100	46	22	12	18	1.83
23804263--23804291	14	2.0	15	93	6	51	41	0	37	20	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23804440--23804482	7	6.6	7	84	10	56	13	9	0	76	1.01
23804440--23804474	18	1.9	18	94	0	61	14	8	0	77	0.99
23805329--23805367	8	5.0	8	84	6	53	71	0	5	23	1.05
23805390--23805447	17	3.4	17	73	4	55	72	3	1	22	1.09
23806304--23806363	22	2.6	24	80	12	65	43	0	1	55	1.10
23808595--23808692	49	2.0	49	90	4	153	27	12	15	44	1.82
23810594--23810619	12	2.2	12	100	0	52	26	11	15	46	1.80
23811274--23811299	2	13.0	2	100	0	52	0	50	0	50	1.00
23817270--23817342	36	2.0	36	100	0	146	47	19	10	21	1.79
23821750--23821788	20	2.0	19	85	5	51	69	5	0	25	1.09
23821680--23821779	38	2.6	38	77	6	103	60	8	1	31	1.32
23821817--23821873	10	5.5	10	74	13	53	68	1	0	29	1.00
23821817--23821873	21	2.7	21	75	20	57	68	1	0	29	1.00
23821834--23821871	20	2.0	20	89	5	60	68	2	0	28	1.03
23821806--23821872	31	2.1	31	83	8	82	65	2	0	31	1.07
23821729--23821914	70	2.7	68	79	9	173	61	6	1	31	1.28
23821944--23822003	20	3.0	20	76	16	63	56	8	3	31	1.45
23821944--23822117	28	6.2	27	74	12	120	57	6	2	32	1.40
23821971--23822107	10	14.5	10	73	11	76	56	8	2	32	1.44
23821944--23822117	9	18.6	9	70	13	86	57	6	2	32	1.40
23821944--23822107	19	8.7	18	73	15	77	56	7	3	33	1.43
23822168--23822205	17	2.2	17	86	9	51	31	0	5	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23822210--23822273	18	3.6	17	71	24	53	42	1	4	51	1.32
23822426--23822507	9	8.6	9	75	14	58	34	1	8	56	1.38
23822507--23822562	17	3.1	18	79	7	60	32	3	7	57	1.43
23822587--23822661	20	3.8	20	98	0	141	41	0	0	58	0.98
23822710--23822752	18	2.4	18	80	3	61	46	0	6	46	1.30
23822704--23822755	27	1.9	27	84	0	68	50	0	7	42	1.31
23822732--23822809	20	3.8	20	74	3	66	51	1	3	43	1.28
23822798--23822834	11	3.4	11	92	7	58	24	0	2	72	0.97
23825712--23825834	2	63.5	2	77	9	67	43	9	0	46	1.36
23828838--23829062	121	1.9	121	86	5	330	45	5	12	36	1.66
23829875--23830350	22	21.9	22	66	11	93	50	5	9	35	1.56
23829877--23829969	44	2.1	44	88	4	134	50	2	7	39	1.43
23829886--23829937	11	4.7	11	73	0	50	55	1	5	36	1.35
23830107--23830158	11	4.7	11	75	0	50	57	1	5	34	1.33
23830126--23830251	61	2.1	61	81	3	146	50	3	8	36	1.52
23830237--23830350	43	2.6	44	82	8	126	50	4	7	37	1.52
23830281--23830369	22	4.1	21	76	9	74	49	5	5	39	1.50
23830397--23830438	19	2.3	18	84	8	57	47	0	14	38	1.44
23830429--23830505	22	3.5	20	75	16	64	64	3	2	28	1.24
23830488--23830542	22	2.7	19	76	15	65	56	5	3	34	1.40
23830498--23830647	22	7.0	22	73	4	90	49	6	4	40	1.48
23830489--23830670	85	2.1	85	86	0	247	49	5	5	39	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23830697--23830926	22	10.5	22	71	5	108	47	9	3	39	1.53
23830697--23830910	43	4.9	43	69	9	112	48	9	3	39	1.52
23831223--23831265	22	2.0	22	90	0	68	53	4	6	34	1.49
23831184--23831370	66	2.8	65	70	8	155	48	5	8	37	1.55
23831312--23831433	22	5.8	21	64	17	58	45	8	8	37	1.64
23831400--23831433	16	2.2	16	94	5	61	52	5	5	35	1.50
23831311--23831416	22	4.8	22	67	11	72	45	8	8	37	1.65
23831534--23831585	22	2.4	22	83	6	61	59	1	7	30	1.36
23831610--23831883	22	12.1	22	69	10	113	45	5	9	40	1.58
23831673--23831825	44	3.5	44	80	6	168	45	5	7	41	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190