genome.fa.s223.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  66  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10976823--10984645	892	8.7	896	87	3	10395	26	24	23	25	2.00
10979487--10979539	26	2.0	26	92	0	88	26	22	22	28	1.99
10980380--10980431	26	2.0	26	96	0	95	26	21	19	32	1.97
10982161--10982213	26	2.0	26	92	0	88	28	26	16	28	1.97
10983061--10983113	26	2.0	26	92	0	88	26	22	20	30	1.98
10983953--10984005	26	2.0	26	96	0	97	26	24	20	28	1.99
10986401--10986453	26	2.0	26	96	0	97	26	24	20	28	1.99
10984742--10987925	911	3.5	895	87	4	4176	26	24	23	25	2.00
10987312--10987364	26	2.0	26	92	0	88	28	24	20	26	1.99
10988997--10989307	171	1.8	170	85	3	437	18	27	31	23	1.97
10989347--10989399	26	2.0	26	92	7	90	28	22	20	28	1.99
10990386--10990438	26	2.0	26	92	7	90	28	22	20	28	1.99
10991438--10991490	26	2.0	26	85	7	72	28	22	20	28	1.99
10992105--10992517	159	2.6	157	82	7	458	18	29	29	23	1.97
10992491--10992543	26	2.0	26	89	7	81	30	22	18	28	1.98
10993215--10993569	159	2.2	158	83	5	441	19	27	30	22	1.98
10993543--10993595	26	2.0	26	96	0	97	28	26	18	26	1.98
10998842--10998894	26	2.0	26	92	0	88	28	24	18	28	1.98
10993569--11004146	877	12.0	874	85	5	12857	25	24	24	25	2.00
11001489--11001541	26	2.0	26	88	0	79	28	22	20	28	1.99
11005581--11005633	26	2.0	26	96	0	97	26	24	20	28	1.99
11007346--11007399	26	2.1	26	96	0	99	25	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11009135--11009187	26	2.0	26	96	0	97	28	26	18	26	1.98
11009937--11009962	12	2.2	12	100	0	52	23	19	42	15	1.89
11011963--11013395	728	1.9	729	81	6	1599	22	25	25	26	2.00
11013027--11013078	26	2.0	25	92	3	86	26	26	19	26	1.99
11013919--11013971	26	2.0	26	96	0	97	26	24	22	26	2.00
11012693--11019475	903	7.4	896	70	13	3831	25	24	24	25	2.00
11014813--11014865	26	2.0	26	96	0	97	28	26	18	26	1.98
11014981--11015349	196	1.9	194	87	3	544	21	23	27	27	1.99
11016764--11016814	26	2.0	26	88	7	77	23	27	17	31	1.97
11017656--11017708	26	2.0	26	96	0	97	26	24	20	28	1.99
11018552--11018604	26	2.0	26	92	0	88	26	26	20	26	1.99
11015160--11019475	903	4.9	894	85	3	5407	25	24	23	25	2.00
11024641--11024693	26	2.0	26	100	0	106	26	26	20	26	1.99
11025539--11025591	26	2.0	26	88	0	79	30	24	16	28	1.97
11026108--11026160	26	2.0	26	88	0	79	32	20	18	28	1.97
11028747--11028800	26	2.1	26	92	0	90	25	20	25	27	1.99
11029633--11029685	26	2.0	26	92	0	88	30	20	20	28	1.98
11030527--11030579	26	2.0	26	92	0	88	26	20	26	26	1.99
11026506--11040786	888	16.0	891	85	4	17396	25	23	24	26	2.00
11033626--11033673	26	1.9	26	83	8	64	25	6	16	52	1.67
11034079--11034129	26	2.0	26	96	0	93	27	17	29	25	1.98
11035871--11035923	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11037666--11037718	26	2.0	26	92	0	88	28	18	24	28	1.98
11033481--11040787	903	8.2	901	85	4	9114	25	23	24	26	2.00
11039459--11039511	26	2.0	26	92	0	88	26	18	28	26	1.98
11044798--11044850	26	2.0	26	96	0	97	28	20	24	26	1.99
11046561--11046612	26	2.0	26	96	0	95	26	17	26	28	1.97
11047443--11047494	26	2.0	25	92	3	86	26	17	26	28	1.97
11045693--11050052	881	4.9	885	83	6	5150	25	24	24	25	2.00
11049194--11049245	25	2.0	26	92	3	88	26	19	25	28	1.98
11051798--11051850	26	2.0	26	96	0	97	28	20	24	26	1.99
11050058--11054535	874	5.1	895	82	7	5118	25	24	24	25	2.00
11055206--11055258	26	2.0	26	92	0	88	26	20	24	28	1.99
11059839--11059891	26	2.0	26	92	0	88	30	20	22	26	1.98
11059981--11060014	12	2.8	12	86	0	50	17	38	20	23	1.93
11060754--11060806	26	2.0	26	88	0	79	30	18	22	28	1.98
11061648--11061700	26	2.0	26	92	0	88	28	16	26	28	1.97
11063405--11063457	26	2.0	26	96	0	97	28	18	26	26	1.98
11064209--11064238	11	2.7	11	94	0	51	16	20	40	23	1.91
11064319--11064371	26	2.0	26	88	0	79	28	16	24	30	1.97
11059403--11066176	915	7.5	907	85	4	8507	25	24	24	25	2.00
11065236--11065289	26	2.1	26	100	0	108	27	22	25	24	2.00
11067562--11067614	26	2.0	26	85	0	70	30	20	20	28	1.98
11066713--11076796	892	11.3	894	72	13	6305	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11068454--11068506	26	2.0	26	96	0	97	28	20	24	26	1.99
11072110--11072162	26	2.0	26	96	0	97	28	20	24	26	1.99
11073899--11073951	26	2.0	26	96	0	97	28	20	24	26	1.99
11070384--11076747	862	7.2	877	82	7	6784	25	24	24	25	2.00
11076655--11076946	159	1.8	162	82	5	378	22	30	27	19	1.98
11077580--11077632	26	2.0	26	89	7	81	28	18	22	30	1.98
11078629--11078681	26	2.0	26	89	7	81	28	18	22	30	1.98
11079671--11079723	26	2.0	26	92	7	90	28	20	22	28	1.99
11081801--11081853	26	2.0	26	96	0	97	24	22	26	26	2.00
11080028--11084417	903	4.9	894	86	4	5677	25	23	24	25	2.00
11082704--11082756	26	2.0	26	96	0	97	28	20	24	26	1.99
11083603--11083655	26	2.0	26	96	0	97	28	20	24	26	1.99
11086787--11086839	26	2.0	26	96	0	97	26	18	26	28	1.98
11088567--11088618	26	2.0	26	92	0	86	30	19	21	28	1.97
11090330--11090385	26	2.2	26	93	0	94	25	19	25	30	1.98
11092085--11092137	26	2.0	26	100	0	106	26	20	26	26	1.99
11092271--11092321	26	2.0	26	88	0	75	29	21	25	23	1.99
11092997--11093078	26	3.2	26	96	0	146	28	18	24	29	1.98
11094829--11094884	26	2.2	26	90	0	85	28	17	21	32	1.96
11095732--11095784	26	2.0	26	96	0	97	28	20	26	24	1.99
11093475--11097909	886	5.0	892	83	6	5148	25	23	24	25	2.00
11097476--11097528	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11097665--11098150	263	1.8	264	89	0	767	24	21	28	25	1.99
11098641--11098693	26	2.0	26	88	0	79	30	18	24	26	1.98
11099055--11099107	26	2.0	26	92	0	88	30	20	22	26	1.98
11099884--11099936	26	2.0	26	88	0	79	30	18	22	28	1.98
11102369--11102421	26	2.0	26	96	0	97	26	18	26	28	1.98
11100370--11104220	903	4.3	897	86	4	5136	25	24	25	25	2.00
11104147--11104200	26	2.1	26	92	0	90	29	20	24	25	1.99
11104857--11104909	26	2.0	26	96	0	97	24	20	26	28	1.99
11103531--11104938	712	2.0	712	90	1	2198	25	23	23	28	2.00
11105921--11105973	26	2.0	26	96	0	97	26	24	20	28	1.99
11105801--11115783	893	11.0	897	79	8	10112	25	24	24	25	2.00
11107719--11107771	26	2.0	26	96	0	97	26	24	20	28	1.99
11108622--11108674	26	2.0	26	92	0	88	26	22	20	30	1.98
11109518--11109570	26	2.0	26	100	0	106	26	26	20	26	1.99
11111451--11111501	26	2.0	26	92	0	84	29	21	19	29	1.98
11117382--11117434	26	2.0	26	96	0	97	26	24	20	28	1.99
11116134--11120568	872	5.0	887	84	5	5410	25	24	23	25	2.00
11118276--11118328	26	2.0	26	92	0	88	28	28	18	24	1.98
11120059--11120111	26	2.0	26	92	0	88	28	26	16	28	1.97
11121572--11128007	890	7.3	879	81	9	6812	25	24	24	25	2.00
11126326--11126388	26	2.4	26	97	0	117	30	25	19	25	1.98
11127217--11128692	711	2.1	711	90	1	2280	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11128822--11128874	26	2.0	26	92	0	88	30	24	18	26	1.98
11130599--11130651	26	2.0	26	92	0	88	30	26	16	26	1.97
11131502--11131554	26	2.0	26	96	0	97	26	24	20	28	1.99
11127952--11138724	903	11.9	905	80	8	11405	25	25	24	25	2.00
11133280--11133331	26	2.0	26	92	0	86	28	25	17	28	1.97
11134887--11135263	159	2.4	158	80	2	414	19	29	29	21	1.98
11136137--11136189	26	2.0	26	96	0	97	26	26	18	28	1.98
11135048--11138732	901	4.1	894	86	3	4985	25	25	24	24	2.00
11138742--11142931	894	4.7	896	82	6	5003	26	24	23	26	2.00
11141351--11141400	26	1.9	26	88	8	75	22	30	20	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190