genome.fa.s223.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  159  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25834862--25834903	12	3.5	12	78	12	50	61	0	0	38	0.96
25835206--25835280	15	4.5	16	73	18	55	78	1	10	9	1.02
25839065--25839090	2	13.0	2	100	0	52	50	0	0	50	1.00
25841485--25841542	12	4.8	12	81	6	55	50	0	1	48	1.11
25841601--25841646	22	2.1	22	91	0	74	41	2	0	56	1.11
25842480--25842516	3	12.3	3	100	0	74	32	0	0	67	0.91
25847437--25847487	22	2.3	22	100	0	102	35	3	7	52	1.49
25851926--25852000	3	25.0	3	88	0	78	24	8	33	34	1.84
25851926--25852000	21	3.6	21	83	7	89	24	8	33	34	1.84
25855753--25855781	9	3.3	9	90	9	51	51	0	6	41	1.28
25858416--25858466	20	2.6	20	81	9	61	47	0	0	52	1.00
25858689--25858733	18	2.5	18	92	0	72	24	42	22	11	1.86
25864125--25864169	2	22.5	2	81	0	54	46	4	0	48	1.22
25872419--25872445	7	3.9	7	100	0	54	74	0	0	25	0.83
25873424--25873553	59	2.2	58	79	8	136	49	4	10	35	1.58
25873447--25873678	126	1.8	125	88	4	351	44	5	14	35	1.67
25873573--25873723	59	2.6	59	90	4	250	45	5	12	37	1.65
25874798--25874853	23	2.5	23	91	2	87	26	23	3	46	1.68
25877581--25877648	21	3.1	22	70	25	56	75	0	16	8	1.05
25877590--25877663	14	5.6	13	72	17	55	79	0	14	5	0.90
25877612--25877661	23	2.2	23	89	3	75	84	0	12	4	0.76
25877589--25877662	29	2.5	29	78	8	78	79	0	14	5	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25877590--25877660	33	2.2	32	80	5	90	80	0	14	5	0.89
25878921--25879146	21	9.9	24	70	18	108	43	9	11	35	1.74
25878921--25879259	46	7.4	46	81	4	353	42	9	12	35	1.76
25878924--25879263	138	2.5	137	83	5	416	42	9	13	35	1.76
25879403--25879486	44	2.0	44	83	4	109	30	13	17	38	1.88
25879517--25879564	21	2.3	20	82	7	51	41	12	10	35	1.77
25879772--25879859	41	2.1	41	87	0	122	26	10	23	39	1.86
25881122--25881399	121	2.3	116	83	8	335	48	4	12	34	1.61
25881101--25881401	59	5.0	59	76	11	290	48	4	11	35	1.61
25884684--25884797	30	3.8	30	83	6	131	45	28	2	23	1.66
25884794--25884858	26	2.6	25	78	7	69	35	32	9	23	1.86
25884885--25884920	13	2.8	13	86	0	54	58	30	0	11	1.33
25885099--25885158	26	2.3	26	94	0	102	21	15	10	53	1.70
25885492--25885548	30	1.9	29	82	10	71	49	1	10	38	1.48
25886532--25886565	15	2.2	16	89	5	52	82	0	17	0	0.67
25891496--25891538	16	2.7	16	88	0	59	76	4	11	6	1.13
25895447--25895472	4	6.5	4	100	0	52	46	0	0	53	1.00
25908049--25908075	11	2.5	11	100	0	54	18	7	0	74	1.05
25908085--25908202	44	2.5	44	76	15	105	48	2	0	48	1.21
25909990--25910028	17	2.3	17	90	0	60	64	5	0	30	1.15
25910141--25910266	62	2.0	63	84	9	168	45	6	9	38	1.62
25911003--25911034	15	2.1	15	94	0	55	34	3	6	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25911010--25911042	15	2.2	15	94	0	57	33	3	6	57	1.38
25915956--25916024	36	1.9	36	90	0	111	24	14	18	42	1.88
25916068--25916480	147	2.8	145	81	5	451	43	10	11	33	1.77
25916946--25916986	19	2.2	19	91	4	66	14	0	7	78	0.96
25916946--25917002	19	2.9	19	73	2	60	15	0	7	77	0.98
25917132--25917456	97	3.4	95	78	9	318	36	15	13	34	1.87
25917424--25917478	22	2.5	22	90	0	83	38	16	14	30	1.89
25917357--25917582	125	1.8	126	84	2	312	36	15	14	33	1.88
25918132--25918177	18	2.6	18	78	0	56	36	10	21	30	1.88
25918463--25918546	42	2.0	41	86	2	114	30	8	25	35	1.85
25920129--25920175	24	2.0	24	86	0	67	51	6	21	21	1.70
25920790--25920823	11	3.0	11	86	4	50	14	5	0	79	0.91
25938023--25938314	157	1.8	158	84	9	398	12	27	7	51	1.67
25938024--25938361	157	2.1	155	80	11	359	11	28	8	51	1.67
25940210--25940255	23	2.0	23	100	0	92	34	13	8	43	1.74
25948814--25948897	37	2.3	37	84	12	118	33	28	16	21	1.95
25953302--25953433	20	6.7	20	77	11	119	35	14	7	42	1.74
25953302--25953437	40	3.4	39	76	9	132	35	13	7	43	1.73
25953458--25953551	21	4.6	20	72	18	68	39	18	11	30	1.86
25953637--25953858	88	2.5	88	83	2	277	34	9	11	45	1.71
25953730--25953801	22	3.2	23	70	21	71	37	5	12	44	1.66
25953638--25953833	44	4.5	44	81	4	209	34	8	10	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25954991--25955160	49	3.5	49	74	7	141	28	8	15	47	1.74
25957115--25957188	23	2.9	25	86	9	98	67	0	13	18	1.23
25957119--25957188	25	2.9	25	91	4	108	67	0	14	18	1.24
25958709--25958755	14	3.4	14	77	13	53	44	4	0	51	1.21
25958700--25958775	28	2.7	27	80	11	75	48	3	0	47	1.20
25959346--25959390	21	2.1	22	83	4	56	44	2	4	48	1.35
25959618--25959676	18	3.3	17	83	9	73	38	0	1	59	1.08
25959618--25959660	17	2.4	18	92	3	70	41	0	2	55	1.12
25959690--25959777	31	2.8	31	84	0	113	38	5	15	39	1.72
25961704--25961753	21	2.3	23	89	6	77	58	0	0	42	0.98
25963691--25963725	2	17.5	2	87	0	52	48	5	0	45	1.26
25963691--25963725	10	3.5	10	96	0	61	48	5	0	45	1.26
25963788--25963835	16	3.1	15	82	11	62	25	0	0	75	0.81
25970845--25970936	47	1.9	47	86	6	132	45	15	4	34	1.66
25971015--25971083	34	2.1	33	88	2	102	26	27	20	26	1.99
25986895--25986932	7	5.4	7	81	12	51	84	0	2	13	0.73
25990197--25990349	76	2.0	76	96	0	279	39	10	20	29	1.86
25990566--25991064	245	2.0	245	100	0	998	38	11	14	35	1.82
25993258--25993592	112	3.0	111	88	1	474	33	17	12	36	1.87
25994982--25995006	13	1.9	13	100	0	50	40	12	24	24	1.88
25996258--25996287	15	2.0	15	93	0	51	3	13	0	83	0.77
26000088--26000139	8	6.6	8	91	4	79	38	3	25	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26003404--26003435	16	2.0	17	88	11	50	43	15	6	34	1.72
26003424--26003482	23	2.7	23	78	19	63	54	8	6	30	1.57
26003595--26003643	24	2.0	24	88	4	71	51	12	4	32	1.58
26003666--26003731	32	2.1	31	85	2	87	56	10	3	30	1.49
26003666--26003761	32	3.0	30	80	10	84	54	10	5	30	1.56
26003712--26003935	33	7.2	33	71	18	124	54	11	5	29	1.59
26003641--26003846	118	1.8	115	82	10	271	54	11	5	29	1.58
26003746--26003787	21	2.0	20	90	4	66	57	11	4	26	1.54
26003712--26003935	32	7.2	32	74	13	182	54	11	5	29	1.59
26003848--26003954	20	5.4	20	69	20	73	53	10	5	30	1.58
26003816--26003953	56	2.5	56	90	5	210	55	10	5	29	1.55
26003921--26003984	31	2.1	31	90	0	101	54	12	6	26	1.61
26003921--26004004	31	2.7	31	80	12	91	54	9	5	29	1.56
26004002--26004110	24	4.6	24	73	17	111	55	9	2	32	1.45
26004287--26004321	6	5.8	6	100	0	70	85	0	0	14	0.59
26011900--26011952	25	2.1	25	86	6	72	41	13	13	32	1.82
26015898--26015959	29	2.2	27	88	5	88	43	6	1	48	1.38
26021452--26021512	22	2.9	21	74	11	63	75	18	1	4	1.06
26022533--26022638	20	5.6	19	71	17	71	56	10	6	26	1.57
26022709--26022795	45	2.0	44	82	15	108	73	4	9	12	1.22
26022723--26022796	17	3.8	18	75	18	60	74	4	8	13	1.19
26023763--26023865	6	17.0	6	76	2	80	61	9	1	27	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26023766--26023843	30	2.6	30	85	0	102	60	8	2	28	1.40
26025621--26025649	3	9.7	3	100	0	58	65	0	0	34	0.93
26025648--26025704	3	19.0	3	100	0	114	33	0	0	66	0.92
26026155--26026184	8	3.6	8	91	8	51	86	0	13	0	0.57
26028606--26030597	162	12.3	160	76	8	1423	43	13	9	34	1.75
26028606--26030665	322	6.4	321	78	8	1550	43	13	8	34	1.75
26033809--26034024	108	2.0	108	87	0	315	30	18	15	36	1.91
26034158--26034204	21	2.2	21	84	0	67	38	23	10	27	1.88
26038023--26038060	15	2.5	16	87	8	53	78	2	5	13	1.02
26039468--26039559	43	2.1	44	85	2	123	54	6	10	28	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190