genome.fa.s223.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  162  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26326390--26326583	66	3.0	64	78	11	205	24	22	22	30	1.99
26326768--26327449	48	14.1	49	86	3	873	29	11	23	35	1.90
26326779--26327449	97	6.9	97	86	2	924	29	11	23	35	1.90
26327592--26327626	15	2.3	15	100	0	70	85	14	0	0	0.59
26327589--26327631	12	3.6	12	84	15	54	83	13	2	0	0.74
26327693--26327734	21	2.0	21	90	9	68	33	54	4	7	1.49
26327731--26327773	22	2.0	22	85	0	59	30	48	9	11	1.71
26328572--26328610	21	1.9	20	84	5	51	28	30	23	17	1.97
26329094--26329185	32	2.8	33	79	14	109	47	30	1	20	1.57
26329094--26329193	33	3.1	33	76	11	98	47	30	2	21	1.62
26330906--26330944	3	13.0	3	100	0	78	66	0	0	33	0.92
26331401--26331517	60	2.0	60	84	3	155	36	16	24	22	1.94
26331553--26331678	60	2.1	60	80	5	139	39	13	23	23	1.90
26331580--26331697	60	2.0	60	88	3	175	38	14	23	23	1.92
26331608--26331800	99	1.9	99	92	0	323	37	16	22	23	1.93
26331740--26331958	114	1.9	114	87	0	321	35	15	24	24	1.94
26332056--26332173	52	2.3	52	85	2	148	38	11	16	33	1.85
26332056--26332130	17	4.4	17	67	14	55	40	14	14	30	1.86
26332162--26332355	86	2.3	86	79	3	203	39	15	16	28	1.89
26332293--26332564	121	2.2	121	82	1	321	36	14	20	28	1.92
26332449--26332609	52	3.1	52	77	0	178	34	13	19	32	1.90
26332501--26332797	121	2.5	116	80	6	292	35	12	20	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26332336--26332714	173	2.2	173	90	0	589	35	13	20	30	1.91
26332676--26332839	70	2.4	65	81	11	172	37	11	20	30	1.88
26333754--26333835	29	2.9	27	78	10	76	4	10	2	81	0.93
26333740--26333820	16	5.2	16	71	16	64	4	11	2	81	0.94
26334107--26334201	45	2.1	44	88	1	136	20	16	11	51	1.75
26337583--26337627	21	2.2	21	84	11	58	40	0	6	53	1.27
26337590--26337637	20	2.3	21	75	3	53	29	0	8	62	1.24
26337670--26337712	19	2.3	19	92	8	70	30	2	6	60	1.35
26339631--26339890	134	2.0	133	95	1	468	35	10	12	40	1.78
26347838--26347908	30	2.4	30	73	2	72	36	8	7	47	1.61
26348070--26348094	7	3.6	7	100	0	50	28	12	0	60	1.32
26348555--26348681	56	2.3	55	78	4	139	29	14	14	40	1.86
26348726--26348854	55	2.3	55	83	0	168	26	10	13	50	1.72
26349061--26349101	21	1.9	22	85	5	57	51	17	2	29	1.58
26349143--26349180	15	2.5	15	86	0	58	68	10	7	13	1.39
26356048--26356110	33	1.9	33	83	6	83	55	7	1	34	1.39
26359940--26359972	17	1.9	17	100	0	66	39	12	12	36	1.80
26360800--26360846	24	1.9	25	82	4	60	25	2	17	55	1.53
26362792--26363142	43	8.3	43	82	4	304	26	11	14	47	1.79
26363117--26363167	25	2.0	25	96	0	93	21	7	17	52	1.69
26363077--26363211	69	2.0	69	92	0	225	23	10	17	48	1.78
26363142--26363231	44	2.1	44	87	6	130	23	13	17	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26364658--26364692	2	17.5	2	100	0	70	51	0	48	0	1.00
26369694--26369803	50	2.2	50	83	0	130	37	14	9	39	1.78
26369794--26369888	46	2.1	45	92	2	154	28	10	16	44	1.81
26370588--26370681	42	2.2	42	79	3	109	35	10	9	44	1.72
26373058--26373126	12	5.8	12	73	11	54	8	1	10	79	0.99
26373058--26373126	24	2.9	22	79	12	75	8	1	10	79	0.99
26373062--26373102	18	2.2	19	86	4	57	7	0	14	78	0.96
26373281--26373407	51	2.4	51	85	6	166	25	2	14	57	1.49
26374775--26374801	11	2.5	11	100	0	54	29	37	18	14	1.91
26379582--26379723	75	1.9	75	83	2	187	33	5	7	53	1.51
26380463--26380531	27	2.6	27	97	0	129	57	0	2	39	1.13
26380539--26380584	23	2.0	24	86	4	67	54	0	8	36	1.32
26380890--26380969	41	2.0	41	87	7	119	40	7	11	41	1.69
26381118--26381155	18	2.2	18	86	9	53	39	7	0	52	1.31
26382021--26382059	21	1.9	20	89	5	60	64	5	0	30	1.15
26382469--26382521	15	3.3	16	81	7	63	60	1	0	37	1.08
26386872--26386928	20	2.7	21	86	8	89	24	5	7	63	1.41
26388469--26388494	4	6.5	4	100	0	52	76	0	0	23	0.78
26393210--26393246	2	18.5	2	100	0	74	48	0	0	51	1.00
26393868--26393892	13	1.9	13	100	0	50	36	0	0	64	0.94
26394021--26394091	30	2.4	30	73	2	72	36	8	7	47	1.61
26394252--26394283	7	4.6	7	100	0	64	28	12	0	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26394671--26394766	48	2.0	49	85	2	131	23	16	16	42	1.88
26394643--26394946	159	1.9	158	81	6	362	28	16	11	43	1.83
26394876--26395050	55	3.2	55	81	4	174	29	13	10	46	1.76
26395259--26395299	21	1.9	22	85	5	57	51	17	2	29	1.58
26395342--26395375	14	2.4	14	95	0	59	70	14	0	14	1.17
26403377--26403637	107	2.4	108	82	3	303	37	15	15	31	1.89
26406301--26406333	17	1.9	17	100	0	66	39	12	12	36	1.80
26407158--26407204	24	1.9	25	82	4	60	25	2	17	55	1.53
26409176--26409487	43	7.3	43	80	6	211	26	11	15	46	1.80
26409176--26409487	86	3.7	84	80	4	340	26	11	15	46	1.80
26409462--26409512	25	2.0	25	96	0	93	21	7	17	52	1.69
26409422--26409556	69	2.0	69	93	0	234	22	10	18	48	1.78
26409487--26409576	44	2.1	44	87	6	130	23	13	17	45	1.84
26409623--26409665	8	5.4	8	83	10	52	88	2	4	4	0.70
26409623--26409665	16	2.7	16	85	10	61	88	2	4	4	0.70
26416035--26416144	50	2.2	50	83	0	130	37	14	9	39	1.78
26419370--26419440	12	5.9	12	78	8	56	11	1	11	76	1.10
26419376--26419426	18	2.9	18	79	2	59	9	0	13	76	1.02
26419598--26419724	51	2.4	51	85	6	166	25	2	14	57	1.49
26425658--26425698	22	1.9	22	90	5	66	46	2	0	51	1.14
26425827--26426005	83	2.2	84	85	4	247	31	5	6	56	1.47
26427050--26427116	20	3.3	20	76	15	75	46	4	5	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26427036--26427115	40	2.0	41	90	2	126	46	3	7	42	1.50
26426975--26427217	112	2.2	113	82	3	294	47	4	6	41	1.50
26427157--26427241	42	2.1	39	86	6	116	40	7	11	41	1.69
26427247--26427330	37	2.3	37	85	0	105	47	4	2	45	1.36
26427395--26427433	18	2.2	17	86	4	51	38	7	0	53	1.30
26428301--26428339	21	1.9	20	89	5	60	64	5	0	30	1.15
26428760--26428812	15	3.3	16	81	7	63	60	1	0	37	1.08
26428850--26428888	15	2.4	17	79	12	55	48	2	0	48	1.15
26436176--26436206	2	15.5	2	100	0	62	48	0	0	51	1.00
26448048--26448088	11	3.7	11	90	0	64	58	2	24	14	1.49
26448942--26449012	26	2.8	26	76	2	81	46	0	0	53	1.00
26448946--26449006	22	2.7	22	82	5	59	42	0	0	57	0.98
26449000--26449045	21	2.2	21	92	3	76	47	0	0	52	1.00
26449000--26449051	21	2.5	21	84	6	70	46	0	0	53	1.00
26449039--26449098	32	1.9	31	86	3	84	43	10	6	40	1.64
26455650--26455705	28	2.0	27	82	3	67	69	8	1	19	1.24
26455909--26455951	14	2.9	14	80	10	50	39	0	4	55	1.20
26457549--26457583	17	2.0	18	88	5	54	65	0	0	34	0.93
26458471--26458532	21	2.9	21	77	15	56	64	0	0	35	0.94
26458500--26458526	13	2.1	13	100	0	54	70	0	0	29	0.88
26460889--26460942	23	2.4	23	84	6	67	50	3	1	44	1.30
26460923--26461016	25	3.3	29	78	13	81	45	3	1	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26460900--26461000	25	3.9	25	75	14	98	47	1	0	49	1.19
26461096--26461153	26	2.2	26	85	11	75	46	0	1	51	1.11
26461200--26461244	22	2.0	24	86	8	67	46	0	0	53	1.00
26461464--26461527	16	3.3	20	72	27	59	70	9	4	15	1.30
26463572--26463623	26	2.0	26	82	14	63	11	9	1	76	1.09
26463751--26463832	41	2.0	41	83	4	103	30	6	10	52	1.61
26463716--26463835	60	2.0	58	82	9	145	28	6	12	52	1.64
26463822--26463885	20	3.2	20	88	0	101	39	1	4	54	1.31
26463915--26463953	19	2.0	20	95	5	71	33	5	10	51	1.58
26463999--26464074	38	2.0	38	89	0	116	26	6	14	52	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190