genome.fa.s223.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  100  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15734924--15742429	891	8.4	880	83	6	8401	25	23	24	25	2.00
15737931--15737983	26	2.0	26	85	0	70	28	15	24	32	1.95
15739717--15739768	26	2.0	26	100	0	104	26	19	26	26	1.99
15741508--15741560	26	2.0	26	89	7	81	26	18	26	28	1.98
15742400--15742778	159	2.4	159	87	0	533	22	29	29	17	1.97
15743327--15743359	11	3.0	11	100	0	66	18	36	27	18	1.94
15743440--15743492	26	2.0	26	92	0	88	22	20	28	28	1.99
15744345--15744397	26	2.0	26	96	0	97	28	20	24	26	1.99
15742562--15745273	906	3.0	901	86	3	3668	25	24	24	25	2.00
15745969--15746021	26	2.0	26	100	0	106	26	20	26	26	1.99
15746508--15746612	49	2.1	50	91	1	167	47	11	13	27	1.77
15747824--15747875	25	2.0	26	92	3	88	26	21	23	28	1.99
15748702--15748751	26	1.9	26	100	0	100	28	22	26	24	1.99
15745227--15749448	907	4.7	886	76	13	3449	26	23	24	25	2.00
15753034--15753086	26	2.0	26	96	0	97	26	24	20	28	1.99
15754620--15754672	26	2.0	26	96	0	97	28	24	20	26	1.99
15756227--15756595	159	2.3	158	87	1	524	19	28	28	23	1.98
15756569--15756621	26	2.0	26	96	0	97	26	24	20	28	1.99
15757428--15757477	26	1.9	26	95	0	91	22	26	22	30	1.99
15756510--15759077	860	2.9	873	87	4	3495	25	24	23	25	2.00
15758328--15758379	26	2.0	26	92	0	86	32	19	19	28	1.96
15759051--15759103	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15761731--15761780	26	1.9	26	100	0	100	22	30	20	28	1.98
15763526--15763578	26	2.0	26	92	0	88	30	26	16	26	1.97
15764410--15764462	26	2.0	26	100	0	106	26	26	20	26	1.99
15765307--15765359	26	2.0	26	100	0	106	26	26	20	26	1.99
15766198--15766250	26	2.0	26	96	0	97	26	22	22	28	1.99
15759949--15777646	902	19.9	897	84	5	20731	25	24	23	25	2.00
15767997--15768049	26	2.0	26	92	0	88	26	26	20	26	1.99
15769747--15769799	26	2.0	26	88	0	79	32	24	16	26	1.97
15771534--15771583	26	1.9	26	95	0	91	26	24	20	30	1.98
15773294--15773346	26	2.0	26	96	0	97	28	26	18	26	1.98
15774142--15774194	26	2.0	26	92	0	88	26	22	20	30	1.98
15775047--15775099	26	2.0	26	92	0	88	28	24	18	28	1.98
15773851--15777646	905	4.2	903	90	1	5339	25	24	24	25	2.00
15775953--15776005	26	2.0	26	92	0	88	28	24	18	28	1.98
15776861--15776913	26	2.0	26	88	0	79	30	16	18	33	1.94
15781105--15781157	26	2.0	26	96	0	97	26	28	20	24	1.99
15783131--15783183	26	2.0	26	92	0	88	28	24	18	28	1.98
15784020--15784072	26	2.0	26	96	0	97	26	26	22	24	2.00
15785792--15785844	26	2.0	26	92	0	88	30	24	18	26	1.98
15786699--15786751	26	2.0	26	96	0	97	28	26	18	26	1.98
15788485--15788534	26	1.9	26	95	0	91	22	28	20	30	1.98
15789451--15789481	14	2.2	14	94	0	53	22	32	29	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15789455--15789483	14	2.1	14	100	0	58	20	31	27	20	1.98
15789940--15790524	292	2.0	288	85	2	787	19	29	27	23	1.98
15790521--15790572	26	2.0	26	92	7	88	30	26	15	26	1.96
15791421--15791473	26	2.0	26	96	0	97	24	26	20	28	1.99
15793193--15793245	26	2.0	26	85	0	70	28	24	22	24	2.00
15794084--15794136	26	2.0	26	92	7	90	30	26	16	26	1.97
15792318--15796981	898	5.2	901	86	3	6287	25	24	24	25	2.00
15795884--15795936	26	2.0	26	100	0	106	26	26	20	26	1.99
15790228--15796981	900	7.6	899	85	4	8782	25	25	24	25	2.00
15797475--15797527	26	2.0	26	85	7	72	30	26	16	26	1.97
15802745--15802795	26	1.9	27	88	4	77	27	19	29	23	1.98
15803185--15803348	76	2.2	77	85	3	224	19	17	20	42	1.89
15803719--15803771	26	2.0	26	96	0	97	26	18	26	28	1.98
15804621--15804673	26	2.0	26	92	0	88	28	22	24	24	2.00
15803263--15808188	902	5.5	900	84	5	6032	25	24	24	25	2.00
15806380--15806432	26	2.0	26	89	7	81	26	16	24	32	1.97
15807285--15807337	26	2.0	26	96	0	97	28	20	24	26	1.99
15808881--15808933	26	2.0	26	96	0	97	24	20	28	26	1.99
15810646--15810698	26	2.0	26	85	0	70	26	18	24	30	1.98
15811549--15811601	26	2.0	26	92	0	88	26	20	26	26	1.99
15813131--15813182	26	2.0	26	96	0	95	26	19	25	28	1.98
15812095--15816885	871	5.4	873	83	6	5772	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15815766--15815818	26	2.0	26	96	0	97	24	22	26	26	2.00
15815111--15816739	891	1.8	891	89	1	2593	26	23	24	26	2.00
15816657--15816709	26	2.0	26	96	0	97	30	18	22	28	1.98
15817770--15817822	26	2.0	26	92	0	88	26	20	26	26	1.99
15823054--15823106	26	2.0	26	88	0	79	28	16	24	30	1.97
15823958--15824010	26	2.0	26	96	0	97	28	18	26	26	1.98
15824801--15824853	26	2.0	26	100	0	106	26	20	26	26	1.99
15823483--15837075	844	15.6	853	80	10	10727	25	24	24	25	2.00
15825645--15825697	26	2.0	26	96	0	97	26	18	26	28	1.98
15827400--15827450	26	2.0	26	92	0	84	29	19	19	31	1.97
15828304--15828356	26	2.0	26	96	0	97	26	18	26	28	1.98
15829211--15829261	26	2.0	26	96	0	93	29	19	23	27	1.98
15830119--15830168	26	1.9	26	91	0	82	30	18	28	24	1.97
15826526--15837075	904	12.0	896	82	7	11427	25	24	24	25	2.00
15830984--15831036	26	2.0	26	96	0	97	26	18	26	28	1.98
15832679--15832758	26	3.0	26	87	5	108	30	17	25	27	1.97
15833537--15833592	26	2.2	26	96	0	103	28	19	23	28	1.98
15834433--15834485	26	2.0	26	100	0	106	26	20	26	26	1.99
15836195--15836247	26	2.0	26	88	0	79	30	18	22	28	1.98
15837029--15843120	899	6.8	902	85	5	7903	25	24	24	25	2.00
15841323--15841375	26	2.0	26	92	0	88	26	16	26	30	1.97
15837029--15843200	872	7.0	872	84	6	7355	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15845218--15845270	26	2.0	26	96	0	97	26	24	20	28	1.99
15846125--15846177	26	2.0	26	100	0	106	26	26	20	26	1.99
15846990--15847042	26	2.0	26	88	0	79	30	28	18	22	1.98
15847705--15848067	159	2.3	159	86	1	505	19	28	28	22	1.98
15848041--15848093	26	2.0	26	100	0	106	26	26	20	26	1.99
15850711--15850787	26	3.0	26	98	0	145	29	25	15	28	1.96
15851628--15851680	26	2.0	26	100	0	106	26	26	20	26	1.99
15847864--15852935	896	5.6	902	85	5	6342	25	24	23	25	2.00
15852535--15852587	26	2.0	26	96	0	97	28	26	18	26	1.98
15854886--15854937	26	2.0	25	92	3	86	26	28	19	25	1.98
15855789--15855841	26	2.0	26	92	0	88	28	24	18	28	1.98
15854134--15856430	903	2.5	898	88	2	3359	27	23	23	25	2.00
15857719--15857771	26	2.0	26	92	0	88	26	20	24	28	1.99
15858609--15858661	26	2.0	26	88	0	79	26	18	24	30	1.98
15856427--15860050	908	4.0	901	85	3	4819	25	23	24	26	2.00
15860968--15861020	26	2.0	26	96	0	97	26	18	26	28	1.98
15862637--15862689	26	2.0	26	96	0	97	26	18	26	28	1.98
15865783--15865832	26	1.9	26	91	0	82	26	18	28	28	1.98
15864907--15903777	895	43.0	894	72	12	19565	25	23	24	25	2.00
15867560--15867612	26	2.0	26	88	0	79	28	20	22	28	1.99
15868450--15868501	26	2.0	26	96	0	95	26	21	26	25	1.99
15870235--15870284	26	1.9	26	100	0	100	28	22	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15871911--15871944	11	3.1	11	100	0	68	17	35	17	29	1.93
15872026--15872078	26	2.0	26	96	0	97	28	20	24	26	1.99
15875568--15875619	25	2.0	26	88	3	79	26	21	23	28	1.99
15877361--15877413	26	2.0	26	92	0	88	28	15	24	32	1.95
15883984--15884040	26	2.2	26	93	0	96	26	15	26	31	1.96
15884855--15884905	26	2.0	26	96	0	93	27	17	25	29	1.98
15887517--15887569	26	2.0	26	100	0	106	26	20	26	26	1.99
15889240--15889292	26	2.0	26	100	0	106	26	16	26	30	1.97
15890126--15890177	26	2.0	26	96	0	95	28	19	25	26	1.98
15891014--15891066	26	2.0	26	96	0	97	26	20	24	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190