genome.fa.s223.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  91  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14464590--14464642	26	2.0	26	96	0	97	26	18	26	28	1.98
14466745--14466797	26	2.0	26	96	0	97	26	24	22	26	2.00
14468489--14468541	26	2.0	26	96	0	97	28	26	18	26	1.98
14469393--14469445	26	2.0	26	92	0	88	26	22	20	30	1.98
14467919--14471058	905	3.5	901	87	3	4416	25	24	23	25	2.00
14470263--14471786	726	2.1	716	88	3	2292	26	24	23	25	2.00
14472783--14472835	26	2.0	26	96	0	97	26	24	22	26	2.00
14471003--14476229	891	5.8	900	84	4	6241	26	24	23	25	2.00
14473675--14473727	26	2.0	26	96	0	97	28	26	18	26	1.98
14474563--14474644	26	3.2	25	75	19	78	28	21	18	31	1.97
14475496--14475551	26	2.2	26	86	0	76	32	21	17	28	1.96
14478512--14478545	14	2.4	14	85	0	50	20	20	32	26	1.97
14477958--14481117	905	3.6	875	85	5	3974	25	23	24	26	2.00
14481172--14481222	26	2.0	26	92	0	84	27	15	27	29	1.96
14482060--14482111	26	2.0	26	92	3	88	26	19	25	28	1.98
14481196--14486334	909	5.8	871	84	5	6251	25	23	24	25	2.00
14485597--14485649	26	2.0	26	88	0	79	30	15	22	32	1.94
14488154--14488204	26	2.0	26	88	0	75	29	19	23	27	1.98
14486371--14491382	895	5.7	897	84	5	6260	25	24	24	25	2.00
14489922--14489974	26	2.0	26	96	0	97	26	16	28	28	1.97
14490803--14490855	26	2.0	26	92	0	88	26	16	26	30	1.97
14493391--14493440	25	2.0	26	96	4	93	30	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14495218--14495267	26	1.9	26	95	0	91	30	22	24	24	1.99
14496131--14496187	28	2.0	28	90	6	89	28	19	26	26	1.99
14497014--14497066	26	2.0	26	92	0	88	28	16	26	28	1.97
14497912--14497963	26	2.0	26	92	0	86	28	21	25	25	1.99
14491402--14500458	881	10.1	899	83	6	10182	25	24	24	25	2.00
14499680--14499732	26	2.0	26	92	0	88	28	18	24	28	1.98
14499727--14501200	744	2.0	731	86	4	2050	24	23	25	27	2.00
14501318--14501370	26	2.0	26	92	0	88	28	18	24	28	1.98
14502424--14502448	8	3.1	8	100	0	50	12	24	64	0	1.27
14504416--14504468	26	2.0	26	92	0	88	28	20	22	28	1.99
14506191--14506243	26	2.0	26	96	0	97	26	18	26	28	1.98
14505155--14509819	896	5.2	893	84	3	5803	25	24	24	25	2.00
14507090--14507142	26	2.0	26	100	0	106	26	20	26	26	1.99
14507981--14508059	26	3.0	26	96	0	140	29	20	22	27	1.98
14508904--14508954	26	2.0	26	92	0	84	29	17	25	27	1.98
14510501--14510553	26	2.0	26	92	0	88	30	20	22	26	1.98
14511419--14511472	26	2.1	26	89	0	81	27	16	25	29	1.97
14512324--14512376	26	2.0	26	88	0	79	30	15	22	32	1.94
14513230--14513282	26	2.0	26	88	0	79	30	15	26	28	1.96
14515871--14515923	26	2.0	26	96	0	97	26	20	24	28	1.99
14516763--14516813	26	2.0	26	96	0	93	29	15	27	27	1.96
14509764--14517936	906	9.1	900	83	5	9546	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14517981--14518032	26	2.0	26	88	7	79	30	17	25	26	1.97
14517627--14518225	313	1.9	313	84	2	810	23	27	29	19	1.98
14518884--14518936	26	2.0	26	92	0	88	28	16	26	28	1.97
14520659--14520710	26	2.0	26	92	0	86	28	17	25	28	1.97
14517940--14532602	891	16.2	895	72	13	8925	25	24	24	25	2.00
14524102--14524153	25	2.0	26	88	3	79	30	17	25	26	1.97
14524102--14524490	185	2.1	185	80	4	428	24	26	26	22	2.00
14527839--14528199	185	2.0	185	84	3	476	22	29	26	21	1.99
14528881--14528933	26	2.0	26	92	0	88	30	18	24	26	1.98
14527968--14532583	895	5.2	892	87	2	6183	25	23	24	25	2.00
14530672--14530724	26	2.0	26	96	0	97	28	20	24	26	1.99
14531562--14531615	26	2.1	26	96	0	99	25	18	27	27	1.98
14533203--14533255	26	2.0	26	88	0	79	24	16	26	32	1.97
14534982--14535034	26	2.0	26	88	0	79	26	20	24	28	1.99
14532492--14536651	876	4.7	868	83	7	4758	25	23	24	26	2.00
14538742--14540709	900	2.2	903	83	5	2566	25	24	24	25	2.00
14540760--14540811	26	2.0	26	84	0	68	32	17	23	26	1.96
14543908--14543960	26	2.0	26	88	0	79	28	16	26	28	1.97
14545211--14545267	26	2.2	25	78	12	62	21	7	17	54	1.66
14545671--14545723	25	2.1	25	85	0	70	30	16	18	33	1.94
14543259--14547005	873	4.2	884	84	5	4693	25	23	24	26	2.00
14548218--14548261	19	2.3	19	96	0	79	34	25	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14548541--14548593	26	2.0	26	88	0	79	28	18	24	28	1.98
14549417--14549469	26	2.0	26	96	0	97	28	20	24	26	1.99
14550316--14550365	26	1.9	26	100	0	100	28	20	26	26	1.99
14551217--14551269	26	2.0	26	96	0	97	26	22	24	26	2.00
14549294--14553930	901	5.2	895	85	2	6096	25	24	25	25	2.00
14552114--14552166	26	2.0	26	85	0	70	30	22	20	26	1.98
14553015--14553067	27	1.9	28	84	3	72	32	16	22	28	1.96
14554595--14554647	26	2.0	26	92	0	88	30	20	22	26	1.98
14555496--14555549	26	2.1	26	92	0	90	27	18	25	27	1.98
14553902--14556412	902	2.8	888	85	5	3226	25	23	24	26	2.00
14557078--14557130	26	2.0	26	92	0	88	30	20	22	26	1.98
14557979--14558032	26	2.1	26	92	0	90	27	18	25	27	1.98
14558883--14558935	26	2.0	26	88	0	79	28	16	26	28	1.97
14559781--14559833	26	2.0	26	92	0	88	28	16	26	28	1.97
14562400--14562450	26	2.0	26	92	0	84	27	21	19	31	1.97
14569843--14569894	26	2.0	26	100	0	104	26	19	26	26	1.99
14567117--14590941	893	26.9	887	78	10	19393	25	23	24	25	2.00
14571606--14571658	26	2.0	26	96	0	97	28	20	24	26	1.99
14572468--14572520	26	2.0	26	96	0	97	28	20	24	26	1.99
14573353--14573405	26	2.0	26	92	0	88	24	22	24	28	2.00
14575742--14575773	12	2.7	12	95	0	55	34	18	34	12	1.89
14575947--14575997	25	2.0	26	85	7	70	31	17	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14576130--14576179	26	1.9	26	95	0	91	28	20	26	26	1.99
14575926--14576338	185	2.2	184	83	2	499	23	27	26	21	1.99
14577092--14590941	868	15.8	869	84	6	15967	25	23	24	26	2.00
14579705--14579757	26	2.0	26	92	0	88	26	18	24	30	1.98
14581489--14581536	25	1.9	25	86	0	69	27	18	25	29	1.98
14584110--14584157	25	1.9	25	95	0	87	29	16	27	27	1.97
14584951--14585003	26	2.0	26	100	0	106	26	16	26	30	1.97
14586725--14586774	25	2.0	25	96	0	91	28	18	30	24	1.97
14587573--14587625	26	2.0	26	88	0	79	28	20	22	28	1.99
14588468--14588518	26	2.0	26	96	0	93	29	17	27	25	1.98
14584385--14590941	894	7.5	895	84	5	8273	25	23	24	26	2.00
14589349--14589401	26	2.0	26	92	0	88	28	18	24	28	1.98
14591042--14591094	26	2.0	26	88	0	79	28	16	24	30	1.97
14593665--14593717	26	2.0	26	96	0	97	26	15	26	32	1.95
14595426--14595504	26	3.0	26	94	0	140	26	16	26	30	1.97
14597233--14597283	26	2.0	26	88	0	75	29	19	27	23	1.98
14590951--14599518	899	9.6	895	84	5	10567	25	23	25	25	2.00
14598130--14598182	26	2.0	26	88	0	79	24	16	28	30	1.97
14599024--14599076	26	2.0	26	96	0	97	28	20	24	26	1.99
14600602--14600654	26	2.0	26	92	0	88	28	22	22	26	1.99
14601500--14601552	26	2.0	26	96	0	97	26	22	26	24	2.00
14599736--14608971	898	10.2	899	86	2	12158	25	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14603312--14603364	26	2.0	26	92	0	88	28	18	24	28	1.98
14604213--14604265	26	2.0	26	92	0	88	30	20	22	26	1.98
14605140--14605193	26	2.1	26	96	0	99	27	20	25	25	1.99
14606032--14606092	26	2.4	26	89	5	90	27	19	26	26	1.99
14607829--14607881	26	2.0	26	96	0	97	26	18	30	24	1.98
14608730--14608782	26	2.0	26	96	0	97	28	20	24	26	1.99
14608756--14609122	159	2.3	159	83	0	450	22	28	28	20	1.98
14609127--14610516	719	1.9	718	91	1	2264	26	22	24	27	2.00
14610824--14610876	26	2.0	26	85	0	70	28	15	26	30	1.96
14612213--14612265	26	2.0	26	92	0	88	26	20	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190