genome.fa.s223.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  37  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6398670--6398715	20	2.3	20	82	13	60	0	32	0	67	0.91
6398726--6398776	22	2.3	23	86	3	68	1	23	0	74	0.92
6398726--6398794	22	3.3	21	78	8	61	4	21	0	73	1.00
6398746--6398809	34	1.9	35	87	9	98	6	20	0	73	1.04
6400188--6400472	144	2.0	142	94	2	500	33	15	11	39	1.83
6402157--6402207	5	10.0	5	83	12	59	0	3	13	82	0.81
6402143--6402204	16	3.8	16	85	8	72	1	4	12	80	0.94
6402375--6402995	49	12.7	49	84	7	764	33	26	11	28	1.91
6402375--6403005	97	6.4	97	86	6	839	33	26	11	28	1.91
6417507--6417650	61	2.4	60	82	5	157	53	6	5	34	1.49
6417419--6417904	60	8.2	59	73	8	301	50	5	7	36	1.54
6417568--6417897	115	2.8	115	76	11	298	49	4	8	38	1.53
6417968--6418105	48	2.9	48	78	10	129	47	3	12	36	1.59
6417846--6418186	171	2.0	171	83	8	428	48	4	9	36	1.58
6430324--6430430	26	3.9	26	74	17	108	46	5	3	43	1.44
6430319--6430491	26	6.2	26	65	22	73	49	5	5	40	1.48
6430650--6430775	49	2.6	47	84	9	157	46	3	13	36	1.59
6430839--6430889	24	2.2	22	79	6	57	45	7	5	41	1.57
6431892--6431937	24	1.9	24	86	0	65	19	2	15	63	1.41
6432590--6432723	64	2.0	64	85	8	178	46	7	14	31	1.73
6440094--6440136	22	2.0	22	86	9	61	48	0	0	51	1.00
6440438--6440503	23	2.8	23	75	13	71	45	0	3	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6440640--6440679	2	22.0	2	80	19	52	47	0	0	52	1.00
6440630--6440679	12	4.0	13	85	15	61	50	0	0	50	1.00
6441610--6441658	24	2.0	24	88	0	71	38	2	2	57	1.22
6442371--6442400	11	2.6	11	94	5	51	60	0	3	36	1.14
6442848--6442899	23	2.3	22	81	12	61	53	3	3	38	1.37
6443682--6443735	24	2.4	22	75	6	54	38	3	1	55	1.28
6444493--6444562	28	2.5	28	90	0	104	30	10	7	52	1.61
6444493--6444574	28	3.1	28	81	6	100	30	9	6	53	1.58
6450066--6450111	21	2.2	21	92	3	76	52	0	0	47	1.00
6450063--6450114	21	2.7	19	80	13	70	50	0	0	50	1.00
6450800--6450841	21	2.0	21	90	9	68	47	19	0	33	1.49
6456837--6457130	162	1.8	163	80	6	364	32	15	29	22	1.95
6457140--6457346	77	2.7	75	77	5	191	34	17	23	25	1.96
6462584--6462615	11	3.0	11	95	4	57	28	0	6	65	1.16
6464187--6464244	9	6.6	9	80	9	66	15	0	10	74	1.08
6464187--6464239	18	2.9	19	86	8	74	15	0	11	73	1.09
6464275--6464339	34	1.9	34	96	0	121	44	21	3	30	1.67
6464520--6464862	57	6.1	56	74	7	243	40	19	14	25	1.89
6464562--6464853	113	2.6	115	81	4	342	41	19	14	25	1.88
6464833--6464956	58	2.2	57	79	1	131	44	20	10	24	1.83
6464833--6465071	57	4.2	57	75	4	178	42	19	11	25	1.85
6465522--6465579	23	2.5	22	81	13	62	3	13	8	74	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6471948--6471992	22	2.0	22	86	0	63	11	6	13	68	1.37
6473444--6473497	28	1.9	28	85	7	74	24	3	29	42	1.72
6474210--6474255	23	2.0	23	100	0	92	34	26	17	21	1.95
6481225--6481249	11	2.3	11	100	0	50	64	20	8	8	1.46
6488136--6488177	20	2.2	20	82	4	50	61	2	2	33	1.21
6488190--6488230	22	1.9	21	85	5	55	51	2	9	36	1.48
6488237--6488270	17	1.9	17	88	5	50	64	8	0	26	1.22
6488934--6488995	15	4.1	15	73	20	58	41	3	0	54	1.16
6488930--6489005	31	2.7	28	79	16	86	39	2	1	56	1.21
6497125--6497281	52	3.0	51	86	3	215	38	8	26	25	1.85
6497771--6497852	31	2.6	31	88	0	119	28	18	26	26	1.98
6497855--6497974	50	2.4	48	80	6	116	33	8	35	22	1.84
6497904--6497971	25	2.9	22	77	14	73	30	7	36	25	1.83
6498190--6498230	11	3.7	11	84	12	57	24	0	24	51	1.49
6498188--6498230	22	2.0	22	95	0	77	25	0	25	48	1.51
6498255--6498411	52	3.0	52	83	5	201	39	8	26	26	1.84
6499151--6499331	99	1.8	99	85	2	256	25	25	13	34	1.93
6500627--6500663	17	2.2	17	95	0	65	51	5	0	43	1.24
6501113--6501146	11	3.1	11	86	0	50	29	2	0	67	1.05
6517901--6517940	19	2.1	19	85	0	53	60	5	25	10	1.49
6518904--6518951	25	1.9	25	87	8	71	31	8	18	41	1.80
6518970--6519028	31	1.9	31	82	6	75	23	25	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6519083--6519121	20	2.0	20	95	5	71	28	20	20	30	1.98
6519452--6519489	20	1.9	20	88	0	58	7	2	5	84	0.86
6519475--6519523	20	2.5	19	84	12	64	12	2	4	81	0.91
6519475--6519539	32	2.0	32	82	5	78	16	1	7	73	1.13
6519604--6519944	57	5.7	57	84	12	436	44	7	13	34	1.72
6519592--6519957	122	3.1	119	88	7	553	46	7	12	33	1.70
6525427--6525469	18	2.4	18	81	14	54	48	6	0	44	1.29
6526276--6526376	14	6.9	15	75	13	86	48	0	0	51	1.00
6526284--6526468	42	4.4	41	73	16	128	47	0	1	51	1.12
6526273--6526484	51	4.3	51	73	15	137	46	0	0	51	1.10
6526323--6526423	38	2.5	38	82	11	103	43	0	0	54	1.13
6526458--6526502	15	2.9	16	83	3	56	48	0	2	48	1.13
6526322--6526496	62	2.8	60	72	17	153	46	0	1	51	1.15
6526293--6526483	105	1.8	106	82	8	248	46	0	1	51	1.11
6526720--6526769	20	2.5	20	87	6	66	78	12	6	4	1.08
6526718--6526773	27	2.1	26	90	3	85	78	12	5	3	1.05
6527404--6527429	7	3.7	7	100	0	52	69	0	15	15	1.20
6531584--6531932	161	2.2	159	80	6	407	41	13	10	34	1.78
6536061--6536101	17	2.4	18	80	15	52	29	2	9	58	1.43
6536076--6536119	19	2.2	21	88	8	65	27	0	11	61	1.30
6536240--6536322	21	4.2	19	77	10	69	74	4	7	13	1.19
6537615--6537726	51	2.2	51	81	0	143	38	10	18	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6537665--6537937	119	2.3	119	87	1	386	39	12	16	30	1.86
6538976--6539028	11	4.6	11	80	4	61	1	11	3	83	0.87
6543135--6543212	19	3.9	20	84	14	99	79	2	3	14	0.98
6543147--6543212	11	6.4	10	73	18	55	80	1	3	15	0.91
6543135--6543212	41	2.0	39	82	12	97	79	2	3	14	0.98
6543443--6543518	31	2.5	31	84	4	82	47	19	5	27	1.71
6544030--6544071	3	14.0	3	94	0	75	69	0	0	30	0.89
6547016--6547291	62	4.4	61	67	13	141	34	13	10	42	1.78
6547365--6547529	62	2.7	62	87	1	224	36	6	12	44	1.68
6548030--6548091	28	2.2	28	82	0	70	22	6	24	46	1.75
6552565--6552609	18	2.4	18	82	13	56	13	11	4	71	1.29
6552566--6552610	17	2.5	18	85	7	56	15	11	4	68	1.34
6553098--6553457	145	2.5	142	80	5	397	44	10	11	33	1.75
6553098--6553491	141	2.8	141	77	8	377	44	10	11	33	1.76
6559305--6559365	3	20.3	3	89	0	95	63	3	1	31	1.20
6559853--6559935	15	5.6	15	74	7	71	43	38	1	16	1.56
6559814--6559950	14	9.8	13	69	15	69	45	35	1	17	1.58
6559713--6559994	142	2.0	145	81	6	333	44	33	1	20	1.62
6559713--6560013	29	10.4	30	74	9	241	44	32	1	20	1.61
6559975--6560018	21	2.0	22	91	4	72	47	27	0	25	1.52
6559981--6560033	21	2.5	21	84	9	63	45	32	3	18	1.68
6560091--6560148	29	2.0	29	90	6	91	51	18	0	29	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6566109--6566135	2	13.5	2	100	0	54	0	48	0	51	1.00
6571889--6571943	22	2.5	22	75	0	56	7	1	12	78	1.04
6573125--6573179	21	2.7	20	74	17	51	56	1	0	41	1.10
6575387--6575457	18	3.9	18	73	14	56	30	4	30	33	1.77
6575805--6575855	3	17.0	3	91	0	84	33	37	0	29	1.58
6577016--6577127	58	1.9	59	90	1	181	38	10	8	42	1.69
6577228--6577252	5	5.0	5	100	0	50	80	0	0	20	0.72
6577280--6577327	4	12.8	4	87	12	59	75	0	0	25	0.81
6577275--6577327	17	3.1	18	84	12	60	71	1	0	26	0.96
6577280--6577334	12	4.8	11	80	12	58	76	0	1	21	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190