genome.fa.s223.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  95  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15033928--15033980	26	2.0	26	96	0	97	26	18	26	28	1.98
15034831--15034883	26	2.0	26	92	0	88	28	18	24	28	1.98
15032324--15039068	903	7.7	893	88	3	8832	25	23	24	26	2.00
15037435--15037488	26	2.1	26	100	0	108	25	16	27	29	1.97
15038306--15038359	26	2.1	26	92	0	90	25	20	27	25	1.99
15036586--15039068	872	2.8	870	93	0	4106	25	22	25	26	2.00
15038378--15039764	695	2.0	689	89	1	2089	25	22	25	27	2.00
15039066--15040803	880	2.0	875	89	1	2663	24	23	25	25	2.00
15040770--15041173	185	2.2	185	86	2	571	21	26	29	22	1.99
15041874--15041929	26	2.2	26	87	6	78	28	21	23	26	1.99
15042059--15042111	26	2.0	26	92	0	88	26	18	24	30	1.98
15041847--15042270	185	2.3	185	85	2	582	21	28	28	21	1.99
15044725--15044777	26	2.0	26	88	0	79	28	22	22	26	1.99
15042051--15047178	896	5.7	897	86	3	6927	25	23	24	26	2.00
15046524--15046576	26	2.0	26	96	0	97	26	22	26	24	2.00
15047904--15047956	26	2.0	26	92	0	88	28	18	24	28	1.98
15049641--15049693	26	2.0	26	92	0	88	26	18	24	30	1.98
15051406--15051459	27	2.0	28	85	10	76	22	14	27	35	1.93
15052302--15052354	26	2.0	26	92	0	88	28	18	24	28	1.98
15053200--15053252	26	2.0	26	96	0	97	26	18	26	28	1.98
15049050--15056010	895	7.8	892	84	5	8575	25	23	24	26	2.00
15054095--15054147	26	2.0	26	96	0	97	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15054988--15055038	26	2.0	26	92	0	84	31	17	21	29	1.96
15056611--15056663	26	2.0	26	96	0	97	28	20	24	26	1.99
15057972--15062565	872	5.3	872	90	1	6632	25	23	24	26	2.00
15061793--15063359	798	2.0	794	88	1	2312	26	21	24	27	1.99
15064390--15064442	26	2.0	26	96	0	97	26	18	26	28	1.98
15065286--15065338	26	2.0	26	92	0	88	30	20	22	26	1.98
15063528--15066589	897	3.4	900	89	2	4407	24	24	25	25	2.00
15066185--15066237	26	2.0	26	92	0	88	30	20	20	28	1.98
15070190--15070241	25	2.0	26	96	3	97	26	21	25	26	1.99
15071974--15072029	26	2.2	26	86	0	76	28	17	23	30	1.97
15072872--15072924	26	2.0	26	96	0	97	26	22	24	26	2.00
15068451--15079119	896	12.0	900	84	5	13013	25	24	24	25	2.00
15076424--15076476	26	2.0	26	88	0	79	28	16	24	30	1.97
15076498--15076559	32	2.0	31	96	3	115	16	41	19	22	1.89
15077295--15077348	26	2.1	26	92	0	90	31	20	24	24	1.98
15078189--15078241	26	2.0	26	92	0	88	28	18	24	28	1.98
15068451--15076504	878	9.1	895	83	6	7837	25	24	24	25	2.00
15080689--15080741	26	2.0	26	88	0	79	30	22	22	24	1.99
15081589--15081641	26	2.0	26	96	0	97	26	18	26	28	1.98
15083339--15083391	26	2.0	26	88	0	79	28	20	22	28	1.99
15084241--15084293	26	2.0	26	92	0	88	26	24	24	24	2.00
15082462--15087815	903	6.0	903	88	3	7102	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15085144--15085196	26	2.0	26	96	0	97	28	20	24	26	1.99
15086014--15086066	26	2.0	26	96	0	97	26	22	24	26	2.00
15086886--15086938	26	2.0	26	96	0	97	26	22	24	26	2.00
15090337--15090389	26	2.0	26	88	0	79	30	22	22	24	1.99
15091237--15091289	26	2.0	26	96	0	97	26	18	26	28	1.98
15092138--15092190	26	2.0	26	96	0	97	26	22	26	24	2.00
15093037--15093089	26	2.0	26	88	0	79	30	22	22	24	1.99
15090196--15104537	890	16.2	900	82	6	16072	25	24	24	25	2.00
15093936--15094014	26	3.0	26	96	0	140	27	20	26	25	1.99
15094852--15094904	26	2.0	26	85	0	70	30	20	22	26	1.98
15095604--15095637	11	3.1	11	95	0	59	17	32	17	32	1.94
15096553--15096605	26	2.0	26	92	0	88	30	20	22	26	1.98
15097452--15097504	26	2.0	26	92	0	88	26	18	24	30	1.98
15098755--15098806	26	2.0	26	92	0	86	26	9	11	51	1.68
15100088--15100140	26	2.0	26	89	7	81	28	16	24	30	1.97
15096462--15104537	887	9.1	887	82	8	9184	25	24	24	25	2.00
15099225--15104537	901	6.0	897	83	7	6392	25	24	24	25	2.00
15102275--15104537	902	2.5	901	87	3	3208	26	24	23	25	2.00
15106071--15106123	26	2.0	26	88	0	79	30	18	24	26	1.98
15107837--15107892	26	2.2	26	90	0	85	30	21	23	25	1.99
15107678--15108039	185	2.0	185	81	2	431	24	27	27	20	1.99
15107863--15109633	876	2.0	868	87	2	2573	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15109578--15110002	184	2.3	184	82	2	503	21	27	28	22	1.99
15110681--15110733	26	2.0	26	92	0	88	24	18	28	28	1.98
15111576--15111628	26	2.0	26	96	0	97	26	18	26	28	1.98
15109770--15115783	897	6.7	898	85	4	7680	25	23	24	26	2.00
15112473--15112525	26	2.0	26	85	0	70	30	22	18	28	1.98
15115317--15116256	473	2.0	473	90	0	1497	26	18	22	31	1.97
15116508--15116560	26	2.0	26	96	0	97	26	18	26	28	1.98
15115790--15117632	895	2.1	897	87	2	2608	25	23	25	25	2.00
15118243--15118295	26	2.0	26	92	0	88	28	20	22	28	1.99
15120000--15120052	26	2.0	26	96	0	97	24	16	28	30	1.97
15120897--15120949	26	2.0	26	96	0	97	30	20	20	28	1.98
15121783--15121835	26	2.0	26	96	0	97	26	18	26	28	1.98
15122679--15122731	26	2.0	26	96	0	97	26	22	26	24	2.00
15117639--15124603	901	7.8	901	84	4	8805	25	24	24	26	2.00
15124474--15124525	26	2.0	26	88	3	79	26	19	25	28	1.98
15125203--15125255	26	2.0	26	96	0	97	28	20	24	26	1.99
15124574--15131235	868	7.5	872	89	3	8658	25	23	25	26	2.00
15129590--15129642	26	2.0	26	96	0	97	26	18	26	28	1.98
15133059--15133111	26	2.0	26	92	0	88	28	18	24	28	1.98
15133957--15134009	26	2.0	26	92	0	88	30	20	22	26	1.98
15131315--15136211	905	5.5	903	88	2	6730	24	24	25	25	2.00
15134862--15134914	26	2.0	26	92	0	88	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15135755--15135807	26	2.0	26	92	0	88	28	18	24	28	1.98
15135385--15137039	828	2.0	822	84	7	2127	25	24	25	24	2.00
15136213--15153107	900	18.9	885	83	6	18462	25	23	25	25	2.00
15138378--15138429	25	2.0	26	85	3	70	28	21	25	25	1.99
15139258--15139310	26	2.0	26	96	0	97	26	18	26	28	1.98
15141037--15141089	26	2.0	26	96	0	97	28	20	24	26	1.99
15142819--15142871	26	2.0	26	96	0	97	26	22	24	26	2.00
15143717--15143769	26	2.0	26	100	0	106	26	20	26	26	1.99
15147281--15147331	26	2.0	26	96	0	93	27	17	25	29	1.98
15149070--15149125	26	2.2	26	93	0	94	25	17	26	30	1.97
15149957--15150009	26	2.0	26	100	0	106	26	20	26	26	1.99
15150857--15150909	26	2.0	26	92	0	88	26	20	24	28	1.99
15152674--15152726	26	2.0	26	96	0	97	28	20	24	26	1.99
15154922--15154974	26	2.0	26	92	0	88	26	22	22	28	1.99
15155825--15155875	26	2.0	26	92	0	84	27	29	17	25	1.98
15156633--15156685	26	2.0	26	88	0	79	28	28	16	26	1.97
15158048--15158100	26	2.0	26	92	0	88	28	24	18	28	1.98
15162139--15162188	26	1.9	26	91	0	82	28	28	16	28	1.97
15158712--15162815	902	4.6	900	84	6	5342	26	24	23	25	2.00
15163723--15163775	26	2.0	26	96	0	97	28	26	18	26	1.98
15164613--15164668	26	2.2	26	83	0	67	28	23	17	30	1.97
15162861--15167771	903	5.5	900	87	2	6663	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15165520--15165572	26	2.0	26	100	0	106	26	26	20	26	1.99
15166423--15166475	26	2.0	26	96	0	97	28	26	20	24	1.99
15167777--15174768	899	7.8	901	85	4	8970	26	24	23	25	2.00
15172405--15172457	26	2.0	26	89	7	81	28	24	16	30	1.97
15173292--15173341	26	1.9	26	91	0	82	26	22	20	32	1.98
15174867--15174919	26	2.0	26	92	0	88	26	22	20	30	1.98
15176523--15176575	26	2.0	26	96	0	97	28	26	20	24	1.99
15177563--15177595	11	3.0	11	95	0	57	18	30	36	15	1.91
15178734--15178773	17	2.4	17	95	0	71	5	22	45	27	1.73
15179517--15179567	26	2.0	26	96	0	93	29	23	19	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190