genome.fa.s223.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  86  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13785265--13785317	26	2.0	26	88	0	79	30	15	22	32	1.94
13787026--13787078	26	2.0	26	92	0	88	28	18	24	28	1.98
13787932--13787984	26	2.0	26	92	0	88	26	22	22	28	1.99
13786158--13789038	903	3.2	900	87	2	4109	24	25	25	24	2.00
13788838--13788888	26	2.0	26	88	0	75	31	17	25	25	1.97
13789479--13789531	26	2.0	26	96	0	97	26	24	20	28	1.99
13791499--13791551	26	2.0	26	92	0	88	26	16	26	30	1.97
13792401--13792453	26	2.0	26	88	0	79	30	18	22	28	1.98
13790539--13796827	902	7.1	901	87	4	8697	25	24	25	25	2.00
13793268--13793323	26	2.2	26	96	0	103	26	17	25	30	1.97
13794169--13794219	26	2.0	26	84	7	68	25	17	25	31	1.97
13793252--13796827	901	4.0	900	87	4	5107	24	24	25	25	2.00
13795073--13795126	26	2.1	26	100	0	108	27	22	25	24	2.00
13796840--13796892	26	2.0	26	96	0	97	26	24	20	28	1.99
13797741--13797793	26	2.0	26	92	0	88	24	24	20	30	1.99
13804284--13804336	26	2.0	26	92	0	88	30	24	18	26	1.98
13805140--13805192	26	2.0	26	89	7	81	30	24	16	28	1.97
13806041--13806092	26	2.0	26	92	3	88	30	25	21	23	1.99
13807805--13807855	26	2.0	26	100	0	102	29	27	15	27	1.96
13808705--13808758	26	2.1	26	82	6	65	25	20	22	31	1.98
13806937--13810368	897	3.8	896	85	4	4375	26	24	23	25	2.00
13809727--13811773	701	2.9	697	88	3	2871	27	23	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13813598--13813650	26	2.0	26	92	0	88	28	24	18	28	1.98
13812738--13821165	904	9.5	899	86	4	10693	25	24	23	25	2.00
13815397--13815449	26	2.0	26	92	0	88	26	26	18	28	1.98
13818085--13818137	26	2.0	26	85	0	70	28	20	20	30	1.98
13819835--13819886	26	2.0	26	100	0	104	30	26	15	26	1.96
13821327--13821379	26	2.0	26	88	0	79	28	20	22	28	1.99
13822224--13822276	26	2.0	26	96	0	97	28	22	18	30	1.98
13821164--13824652	904	3.9	897	86	4	4604	26	24	24	25	2.00
13823128--13823180	26	2.0	26	86	13	74	28	22	16	32	1.96
13825663--13825715	26	2.0	26	89	7	81	30	26	15	28	1.96
13825697--13827173	716	2.1	713	90	1	2348	26	24	23	26	2.00
13829696--13829746	26	2.0	26	92	0	84	29	27	15	27	1.96
13830609--13830661	26	2.0	26	92	0	88	26	26	20	26	1.99
13828817--13834421	902	6.3	900	86	3	7266	25	24	24	25	2.00
13832408--13832460	26	2.0	26	92	0	88	26	22	20	30	1.98
13834420--13834483	26	2.5	26	87	10	103	29	21	18	29	1.97
13834454--13839197	877	5.4	877	85	4	5895	25	24	24	25	2.00
13837965--13838016	26	2.0	26	92	0	86	25	25	21	28	1.99
13839755--13839807	26	2.0	26	92	0	88	28	18	24	28	1.98
13839985--13840055	20	3.5	20	84	5	81	15	21	59	4	1.53
13840036--13845224	876	5.8	893	85	4	6362	25	23	24	25	2.00
13844252--13844304	26	2.0	26	96	0	97	32	20	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13845148--13845197	26	1.9	26	100	0	100	28	20	26	26	1.99
13845878--13845930	26	2.0	26	92	0	88	24	18	28	28	1.98
13846779--13846831	26	2.0	26	88	0	79	28	16	26	28	1.97
13848397--13848449	26	2.0	26	85	0	70	32	20	18	28	1.97
13846941--13849176	883	2.5	883	89	2	3355	25	23	23	26	2.00
13848940--13849411	236	2.0	234	92	1	784	28	26	22	22	1.99
13849530--13849582	26	2.0	26	85	0	70	30	16	24	28	1.97
13850440--13850492	26	2.0	26	92	0	88	26	20	26	26	1.99
13849175--13853587	889	4.9	896	86	2	5686	25	23	24	25	2.00
13852226--13852278	26	2.0	26	96	0	97	26	15	26	32	1.95
13855605--13855657	26	2.0	26	96	0	97	26	18	26	28	1.98
13853587--13856402	903	3.1	892	87	2	4104	25	24	24	24	2.00
13858076--13858128	26	2.0	26	88	0	79	30	20	22	26	1.98
13856424--13865833	907	10.3	907	80	7	9615	25	23	25	25	2.00
13858983--13859035	26	2.0	26	85	7	72	30	22	20	26	1.98
13860779--13860831	26	2.0	26	100	0	106	26	20	26	26	1.99
13861678--13861730	26	2.0	26	88	0	79	28	16	24	30	1.97
13862654--13862704	26	2.0	26	92	0	84	31	13	25	29	1.94
13865420--13865472	26	2.0	26	88	0	79	28	20	22	28	1.99
13866982--13867034	26	2.0	26	100	0	106	26	20	26	26	1.99
13867870--13867922	26	2.0	26	92	0	88	30	15	24	30	1.95
13869643--13869695	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13870532--13870584	26	2.0	26	100	0	106	26	20	26	26	1.99
13871417--13871469	26	2.0	26	92	0	88	26	20	26	26	1.99
13872321--13872373	26	2.0	26	92	0	88	28	18	24	28	1.98
13866119--13873702	889	8.5	894	85	4	9425	25	24	24	25	2.00
13873206--13873258	26	2.0	26	100	0	106	26	20	26	26	1.99
13874750--13874799	26	1.9	26	95	0	91	24	26	20	30	1.98
13875658--13875710	26	2.0	26	92	0	88	26	22	22	28	1.99
13877460--13877512	26	2.0	26	88	0	79	26	24	18	30	1.98
13873989--13884447	904	11.7	899	84	5	12876	25	24	24	25	2.00
13880104--13880156	26	2.0	26	92	0	88	28	24	18	28	1.98
13883660--13883710	26	2.0	26	96	0	93	27	27	17	27	1.98
13886155--13886207	26	2.0	26	96	0	97	26	26	18	28	1.98
13884401--13887079	899	3.0	889	85	4	3479	26	24	23	25	2.00
13886871--13887194	160	2.0	159	82	5	386	21	29	27	21	1.98
13888119--13888150	15	2.1	15	94	0	55	21	21	34	21	1.97
13889828--13889880	26	2.0	26	96	0	97	26	18	24	30	1.98
13888132--13895300	898	7.9	899	81	7	7610	25	24	24	25	2.00
13890737--13890789	26	2.0	26	89	7	81	24	18	26	30	1.98
13892542--13892594	26	2.0	26	100	0	106	26	20	26	26	1.99
13893438--13893490	26	2.0	26	88	0	79	30	18	22	28	1.98
13894416--13894474	26	2.4	25	85	5	75	22	28	42	6	1.79
13898148--13898200	26	2.0	26	88	0	79	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13899021--13899078	26	2.2	27	93	3	100	27	20	24	27	1.99
13899905--13899956	25	2.0	26	88	3	79	26	21	23	28	1.99
13896876--13900233	883	3.8	880	86	4	4466	25	24	25	24	2.00
13900462--13900511	26	1.9	26	87	0	73	32	22	22	24	1.98
13903127--13903179	26	2.0	26	88	0	79	30	18	24	26	1.98
13904024--13904076	26	2.0	26	89	7	81	28	18	22	30	1.98
13900294--13906458	848	7.0	876	81	8	6496	25	23	24	26	2.00
13907357--13907409	26	2.0	26	92	0	88	24	18	28	28	1.98
13908044--13908096	26	2.0	26	96	0	97	26	18	26	28	1.98
13907148--13908525	687	2.0	687	87	2	2014	23	26	25	24	2.00
13907904--13912184	887	4.8	885	84	5	5207	25	24	24	25	2.00
13910699--13910751	26	2.0	26	92	0	88	28	18	24	28	1.98
13911602--13911654	26	2.0	26	92	0	88	28	18	24	28	1.98
13912246--13912290	17	2.6	17	89	0	72	20	44	22	13	1.85
13912864--13912916	26	2.0	26	96	0	97	26	18	26	28	1.98
13913767--13913819	26	2.0	26	92	0	88	26	16	28	28	1.97
13912473--13915630	903	3.5	901	88	1	4449	25	24	24	25	2.00
13915568--13915619	25	2.0	26	89	10	81	26	17	26	28	1.97
13915548--13915711	79	2.1	80	91	1	267	26	25	22	25	2.00
13915647--13915699	26	2.0	26	96	0	97	28	20	24	26	1.99
13916550--13916601	25	2.0	26	92	3	88	25	21	26	26	1.99
13917280--13917332	26	2.0	26	85	7	72	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13916576--13919044	899	2.8	888	86	3	3398	26	22	24	26	2.00
13923149--13923201	26	2.0	26	88	0	79	28	20	22	28	1.99
13922068--13923464	686	2.0	695	86	3	1945	26	25	26	22	2.00
13924067--13924119	26	2.0	26	96	0	97	26	15	26	32	1.95
13922774--13925842	875	3.5	881	83	7	3570	25	23	24	25	2.00
13924942--13924994	26	2.0	26	88	0	79	28	18	28	24	1.98
13926525--13926577	26	2.0	26	88	0	79	24	16	26	32	1.97
13929162--13929211	26	1.9	26	100	0	100	32	20	22	26	1.98
13930063--13930115	26	2.0	26	92	0	88	28	18	24	28	1.98
13930965--13931013	26	1.9	25	91	4	80	28	20	28	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190