genome.fa.s223.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  115  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17969293--17969452	83	1.9	84	83	3	207	40	20	10	28	1.86
17969985--17970045	26	2.4	26	83	2	70	40	13	13	32	1.82
17970535--17970761	105	2.2	105	90	3	350	34	16	13	35	1.88
17970742--17970783	22	1.9	22	95	0	75	33	26	14	26	1.94
17970390--17970888	231	2.2	232	86	3	693	34	17	13	34	1.89
17971110--17971154	5	8.8	5	90	4	63	77	22	0	0	0.76
17971095--17971229	38	3.5	37	77	12	112	77	15	4	2	1.06
17971095--17971176	17	4.3	20	74	20	70	78	18	3	0	0.90
17971110--17971166	16	3.6	16	83	4	71	75	22	1	0	0.90
17971110--17971179	31	2.3	31	85	11	92	77	20	2	0	0.90
17971172--17971218	25	2.0	25	84	16	64	76	12	4	6	1.12
17971653--17971687	18	1.9	18	88	0	52	42	11	0	45	1.40
17981421--17981497	12	6.2	13	87	1	70	38	41	1	18	1.58
17981431--17981496	6	10.7	6	88	6	96	36	43	1	18	1.59
17981556--17981617	26	2.4	26	86	2	81	51	30	3	14	1.58
17981576--17981616	12	3.2	13	80	12	50	58	31	0	9	1.31
17981556--17981662	13	8.4	12	71	13	72	46	33	3	15	1.64
17987687--17987721	18	1.9	18	94	0	61	85	11	2	0	0.69
17992300--17992333	18	1.9	18	88	5	52	29	0	41	29	1.57
17993501--17993561	17	3.5	18	73	10	56	22	11	19	45	1.82
17993670--17993782	17	6.6	17	70	13	61	34	14	10	40	1.80
17993777--17993811	18	1.9	18	88	11	54	25	2	20	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17993950--17994027	41	1.9	41	83	0	102	28	16	15	39	1.89
17994002--17994044	19	2.3	19	92	4	70	25	16	18	39	1.91
17995107--17995135	13	2.1	14	93	6	51	10	6	6	75	1.17
17996797--17996866	33	2.1	33	91	0	113	34	32	10	22	1.88
17999283--17999323	19	2.2	19	86	4	57	39	24	9	26	1.86
18010121--18010261	7	21.8	6	74	16	97	44	34	1	19	1.59
18010171--18010277	32	3.3	32	88	5	146	44	33	0	20	1.58
18010121--18010261	13	10.9	12	73	15	97	44	34	1	19	1.59
18010283--18010356	39	1.9	38	89	8	114	47	27	6	18	1.74
18010340--18010401	25	2.5	25	86	2	81	43	32	1	22	1.63
18010348--18010419	25	2.9	25	81	8	76	45	31	2	19	1.64
18015112--18015176	32	2.0	32	84	0	85	27	20	6	46	1.74
18019531--18019571	20	2.0	21	90	4	66	24	4	2	68	1.22
18019646--18019701	9	6.0	9	77	22	62	55	1	0	42	1.10
18019590--18019658	35	2.0	34	83	10	88	40	2	1	55	1.24
18019646--18019702	5	11.0	5	75	20	55	56	1	0	42	1.10
18019658--18019713	24	2.3	23	82	14	69	57	1	0	41	1.09
18019649--18019713	29	2.3	28	76	10	69	56	1	0	41	1.08
18020036--18020087	22	2.4	22	90	0	77	28	7	25	38	1.83
18020173--18020545	125	3.0	124	83	5	448	36	14	16	32	1.89
18020833--18020880	18	2.7	18	93	0	78	45	16	16	20	1.85
18022492--18022536	21	2.2	20	88	7	65	6	8	0	84	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18028793--18028978	54	3.4	54	78	8	182	25	10	9	53	1.66
18028793--18028996	109	1.9	108	81	6	250	23	12	8	54	1.65
18031632--18031663	16	1.9	17	93	6	57	25	0	0	75	0.81
18033947--18033985	17	2.3	17	86	8	53	25	2	5	66	1.25
18033999--18034060	30	2.1	30	87	6	90	41	0	1	56	1.09
18034612--18034645	10	3.4	10	95	0	59	58	0	23	17	1.38
18038138--18038204	30	2.2	30	89	0	98	38	2	1	56	1.24
18038173--18038222	23	2.1	24	92	3	84	44	2	0	54	1.11
18039935--18040046	59	1.9	59	88	0	170	23	10	21	44	1.83
18046375--18046412	18	2.1	19	85	14	53	36	5	0	57	1.21
18048432--18048474	21	2.0	21	95	0	77	46	6	0	46	1.30
18048443--18048489	10	4.5	11	76	10	53	53	2	0	44	1.12
18048443--18048489	21	2.2	21	85	7	60	53	2	0	44	1.12
18048596--18048859	142	1.8	144	93	1	460	33	20	3	43	1.67
18055422--18055459	20	1.9	19	89	5	58	65	0	23	10	1.23
18062793--18062823	3	10.7	3	93	6	55	67	0	0	32	0.91
18063885--18064096	108	2.0	108	82	3	257	35	17	12	33	1.88
18064790--18064834	20	2.3	20	81	14	58	8	17	0	73	1.08
18065867--18066088	60	3.8	59	87	5	308	38	13	5	42	1.68
18066148--18066197	3	15.7	3	91	8	57	72	0	0	28	0.86
18066148--18066209	8	7.9	8	82	13	51	75	0	0	24	0.80
18066144--18066205	30	2.1	30	85	11	83	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18066144--18066206	15	4.4	15	78	11	62	74	0	0	25	0.82
18066631--18066689	31	1.9	31	85	0	82	47	16	11	23	1.80
18067071--18067230	14	11.1	13	71	19	81	64	3	3	28	1.26
18067067--18067140	39	1.9	37	89	5	112	62	1	6	29	1.29
18067161--18067228	4	17.0	4	75	22	63	70	0	1	27	0.96
18067161--18067228	27	2.6	25	76	6	73	70	0	1	27	0.96
18067058--18067228	31	5.6	30	66	18	84	64	2	4	28	1.26
18067629--18067746	41	2.9	41	92	0	191	36	22	14	27	1.92
18067459--18067748	125	2.3	125	81	7	320	36	21	15	26	1.93
18067515--18067753	41	5.8	41	77	8	186	35	20	16	27	1.94
18068693--18068726	17	2.1	17	94	5	61	5	8	0	85	0.75
18075897--18075927	15	2.1	15	93	0	53	45	6	29	19	1.75
18079085--18079210	58	2.3	52	78	16	121	32	16	8	42	1.79
18079236--18079301	5	12.8	5	73	23	57	78	0	4	16	0.90
18079236--18079302	6	10.7	6	72	15	55	79	0	4	16	0.90
18079236--18079302	12	6.4	11	73	20	63	79	0	4	16	0.90
18079331--18079378	3	14.7	3	95	4	60	70	0	0	29	0.87
18079327--18079378	15	3.1	16	84	15	70	71	0	0	28	0.87
18079327--18079384	15	3.8	14	76	15	53	72	0	0	27	0.85
18080210--18080299	21	4.3	21	76	10	94	64	1	5	28	1.23
18080234--18080308	18	4.4	17	76	17	59	65	1	4	29	1.19
18080224--18080304	22	3.8	21	80	8	74	64	1	4	29	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18080210--18080342	42	3.2	42	80	8	114	64	3	4	27	1.30
18082346--18082399	29	1.9	29	85	7	76	40	35	3	20	1.70
18087662--18088051	143	2.7	141	84	3	489	30	14	14	40	1.86
18095192--18095237	22	2.1	22	95	0	83	32	4	8	54	1.51
18098782--18098858	21	3.7	21	80	0	91	16	23	14	45	1.84
18099442--18101348	161	11.9	161	80	5	1835	41	15	10	32	1.81
18099442--18101348	798	2.4	804	81	5	2297	41	15	10	32	1.81
18106207--18106277	37	1.9	37	100	0	142	43	19	11	25	1.84
18106828--18106897	34	2.1	34	91	0	113	44	15	17	22	1.86
18107433--18107563	63	2.1	63	81	7	151	29	18	12	39	1.88
18107644--18107853	63	3.4	61	69	12	151	35	14	14	35	1.86
18107542--18107748	104	2.0	103	96	0	378	35	14	12	37	1.84
18107773--18107979	110	1.9	109	88	3	317	34	17	13	35	1.88
18113855--18113900	16	2.8	16	81	15	58	17	0	4	78	0.91
18115025--18115060	19	1.9	18	88	5	54	75	5	5	13	1.17
18115406--18115507	40	2.5	40	87	6	143	46	14	11	27	1.80
18115406--18115504	42	2.4	40	88	6	137	47	14	11	27	1.77
18115406--18115620	110	1.9	110	87	3	315	46	16	12	25	1.81
18115509--18115706	43	4.6	43	87	1	272	46	17	11	24	1.80
18127611--18127659	17	2.9	17	81	6	64	18	0	4	77	0.92
18127611--18127648	16	2.3	16	90	4	58	18	0	2	78	0.86
18127827--18127859	16	2.0	17	88	5	50	18	0	6	75	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18127889--18127940	4	13.5	4	80	15	65	75	1	1	21	1.00
18127888--18127947	20	3.3	17	76	19	59	75	3	1	20	1.04
18129144--18129441	105	2.9	104	84	6	358	45	10	8	36	1.67
18133005--18133038	18	1.9	18	94	5	61	70	0	29	0	0.87
18135909--18135954	20	2.2	21	80	3	58	52	4	6	36	1.47
18136523--18136711	98	1.9	97	85	1	261	57	4	10	28	1.52
18137091--18137158	21	3.2	21	68	12	50	54	4	5	35	1.45
18137354--18137397	16	2.5	17	82	14	54	65	2	0	31	1.05
18137047--18137883	213	3.9	213	75	10	641	52	5	9	32	1.58
18137782--18137827	17	2.6	17	86	3	56	65	4	0	30	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190