genome.fa.s223.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  55  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9079400--9079686	41	7.2	41	78	8	313	25	12	21	41	1.87
9079444--9079586	74	1.9	73	88	2	214	23	11	20	44	1.84
9079403--9079686	116	2.4	116	84	7	338	25	12	20	41	1.87
9079524--9079730	41	5.0	42	83	4	242	25	11	20	42	1.86
9080817--9081180	192	1.9	190	80	10	431	46	9	10	33	1.70
9084403--9084529	68	1.9	68	91	0	209	36	4	15	43	1.68
9085357--9085501	55	2.7	54	80	6	159	48	15	8	27	1.74
9085538--9085667	56	2.3	55	81	1	152	40	13	19	26	1.89
9086485--9086522	19	2.0	19	100	0	76	42	42	0	15	1.47
9086730--9086776	18	2.6	18	86	6	69	44	44	2	8	1.46
9088548--9088597	19	2.6	19	81	12	57	54	28	6	12	1.60
9088510--9088590	40	2.1	39	81	11	94	54	29	3	12	1.55
9089888--9090038	77	2.0	77	91	0	248	35	3	9	50	1.54
9092012--9092055	18	2.2	20	84	11	56	40	4	4	50	1.43
9092400--9092636	73	3.2	72	76	7	217	45	5	11	37	1.64
9092422--9092666	72	3.4	72	76	8	239	46	5	11	37	1.62
9092432--9092740	145	2.1	145	79	5	322	47	5	10	36	1.61
9092695--9092740	24	1.9	24	86	0	65	56	2	2	39	1.24
9095476--9095506	3	10.3	3	100	0	62	32	0	0	67	0.91
9099837--9099894	21	2.7	21	91	2	98	15	36	24	24	1.94
9101881--9102091	94	2.2	96	84	5	268	33	12	11	42	1.80
9102952--9102986	17	2.1	17	100	0	70	42	5	22	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9103496--9103587	6	15.2	6	77	2	76	63	8	2	26	1.35
9104124--9104180	28	2.0	28	89	0	87	40	7	15	36	1.75
9104188--9104304	50	2.3	50	92	0	198	52	15	6	25	1.67
9104615--9104702	18	4.9	18	80	5	88	40	14	12	31	1.84
9104557--9104702	36	4.1	36	69	14	97	44	13	11	30	1.79
9113272--9113339	12	5.6	12	71	3	55	60	11	2	25	1.45
9114818--9114842	11	2.3	11	100	0	50	76	0	0	24	0.80
9119610--9119996	57	6.7	56	80	9	386	35	14	6	42	1.73
9119610--9119996	115	3.4	113	84	5	463	35	14	6	42	1.73
9119612--9119996	172	2.2	172	88	2	549	35	14	6	42	1.72
9120014--9120176	5	32.2	5	69	20	67	73	3	4	19	1.13
9120014--9120111	37	2.8	35	80	7	101	78	2	5	14	1.01
9120014--9120111	6	16.5	6	72	16	71	78	2	5	14	1.01
9120009--9120114	17	5.9	17	73	22	58	77	1	6	14	1.05
9120019--9120089	31	2.3	31	83	11	85	78	2	5	12	1.03
9120014--9120100	32	2.6	33	77	14	90	78	2	5	13	1.03
9120138--9120186	4	12.0	4	79	12	55	73	0	2	24	0.94
9120134--9120192	17	3.5	17	80	13	68	72	0	3	23	0.99
9121011--9121071	31	2.0	31	84	12	81	73	4	0	21	1.01
9121001--9121060	13	4.5	13	74	12	50	75	3	0	21	0.95
9121065--9121104	11	3.5	12	75	25	50	62	5	5	27	1.37
9121195--9121283	6	15.2	6	74	9	76	77	2	2	17	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9121190--9121288	11	8.7	11	75	9	83	76	2	3	18	1.01
9121149--9121288	18	7.9	18	67	13	76	73	2	3	20	1.09
9121197--9121286	29	3.1	29	81	7	96	78	2	2	16	0.94
9121185--9121264	41	2.0	41	82	9	101	73	3	3	18	1.13
9121195--9121288	47	2.1	47	84	6	122	77	2	2	18	0.97
9121474--9121707	41	5.6	42	87	2	285	34	20	17	26	1.95
9121474--9121707	83	2.8	82	83	4	299	34	20	17	26	1.95
9121474--9121707	124	1.9	125	86	4	339	34	20	17	26	1.95
9123285--9123689	205	2.0	205	91	0	659	25	20	14	39	1.91
9127816--9127853	15	2.4	16	87	12	53	5	44	5	44	1.49
9133335--9133597	55	4.7	56	90	8	419	35	11	6	46	1.66
9133614--9133698	37	2.4	34	81	11	91	78	1	5	14	0.99
9133644--9133698	8	6.8	8	80	17	60	81	0	5	12	0.84
9133610--9133696	28	3.0	28	78	16	81	79	1	6	12	0.98
9134716--9134820	35	3.0	35	79	8	97	71	2	3	21	1.15
9134757--9134849	6	15.5	6	70	16	59	76	3	2	18	1.02
9134743--9134797	29	1.9	29	81	3	67	72	3	3	20	1.15
9134716--9134803	35	2.4	37	80	9	101	69	2	4	23	1.19
9134743--9134819	17	4.4	17	79	8	75	75	3	2	18	1.07
9134738--9134849	35	3.1	35	79	7	91	73	3	2	20	1.11
9136469--9136528	9	7.6	8	74	22	56	76	0	23	0	0.78
9136465--9136528	14	4.4	14	72	20	51	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9136465--9136535	23	3.2	21	78	11	79	77	0	21	1	0.85
9136465--9136551	24	3.8	24	77	8	83	74	0	21	3	0.96
9136477--9136551	36	2.0	37	82	7	89	73	0	22	4	1.00
9137653--9137708	21	2.7	21	94	0	94	39	12	14	33	1.83
9137828--9137877	23	2.2	23	85	7	66	30	16	16	38	1.90
9137847--9137889	16	2.6	16	85	3	59	34	16	11	37	1.85
9137884--9137919	14	2.6	14	90	0	54	41	0	19	38	1.52
9138055--9138199	42	3.5	41	88	4	218	24	15	20	40	1.90
9138180--9138226	25	1.9	25	91	4	78	34	10	12	42	1.78
9138138--9138266	67	1.9	67	93	0	222	27	13	17	41	1.88
9138205--9138460	42	6.1	42	83	4	293	23	12	21	42	1.86
9138053--9138346	151	2.0	150	88	0	444	24	13	19	42	1.87
9138096--9138304	109	1.9	109	88	1	312	24	14	18	42	1.88
9138205--9138429	83	2.7	84	87	2	308	22	11	20	45	1.83
9139432--9139485	12	4.3	12	72	9	54	14	1	7	75	1.09
9143995--9144032	20	1.9	20	94	0	67	42	7	0	50	1.31
9145169--9145204	18	2.0	18	88	0	54	38	8	25	27	1.84
9149819--9149860	15	2.7	15	85	10	50	28	0	2	69	1.01
9155432--9155461	12	2.5	12	88	0	51	90	0	10	0	0.47
9156280--9156304	10	2.5	10	100	0	50	40	12	0	48	1.40
9163801--9163828	14	2.0	14	100	0	56	57	7	0	35	1.26
9166273--9166356	43	2.0	43	95	0	150	28	11	13	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9169231--9169435	60	3.3	60	81	10	211	28	16	15	39	1.90
9169522--9169666	61	2.3	63	81	5	163	37	16	15	30	1.89
9174864--9175469	158	3.8	157	83	4	730	32	5	22	39	1.77
9174864--9175469	322	1.9	316	83	4	786	32	5	22	39	1.77
9175965--9176010	21	2.2	21	88	0	65	30	0	13	56	1.37
9177427--9177520	33	2.8	33	85	0	116	44	11	18	25	1.83
9177459--9177630	33	5.2	33	77	2	150	46	11	15	26	1.80
9179239--9179278	13	3.2	13	80	20	50	15	25	0	60	1.35
9181869--9181911	4	11.0	4	85	5	61	74	2	2	20	1.04
9183777--9183824	15	3.3	14	86	13	62	68	2	8	20	1.26
9183788--9183834	21	2.2	21	85	10	69	70	2	6	21	1.20
9183811--9183861	26	1.9	27	84	4	68	64	3	5	25	1.33
9191308--9191339	15	2.1	16	94	5	57	12	3	6	78	1.06
9191404--9191436	16	2.1	16	100	0	66	27	18	6	48	1.71
9193132--9193165	15	2.2	16	90	10	54	26	5	5	61	1.42
9199600--9199639	17	2.4	17	91	0	62	30	27	22	20	1.98
9213929--9213963	17	2.0	18	88	5	54	40	0	2	57	1.14
9214040--9214078	11	3.7	10	86	10	51	64	0	0	35	0.94
9214033--9214091	21	2.8	20	82	10	64	59	0	0	40	0.97
9215130--9215193	24	2.8	23	74	6	67	46	1	0	51	1.10
9215081--9215375	133	2.2	131	83	8	352	29	12	3	54	1.54
9215618--9215656	19	2.0	21	85	10	55	41	17	12	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9216516--9216562	18	2.7	17	80	6	58	70	17	8	4	1.29
9219409--9219433	3	8.3	3	100	0	50	68	0	0	32	0.90
9219432--9219457	3	8.7	3	100	0	52	69	30	0	0	0.89
9219587--9219629	18	2.3	18	88	4	59	41	2	4	51	1.35
9226485--9226511	7	3.9	7	100	0	54	88	11	0	0	0.50
9226492--9226550	27	2.2	27	85	8	77	81	5	10	3	0.96
9226515--9226562	10	5.1	9	77	7	51	81	2	16	0	0.79
9226486--9226561	14	5.5	13	77	11	55	81	5	10	2	0.94
9226484--9226551	15	4.6	14	71	21	50	82	5	8	2	0.93
9227756--9228165	86	4.8	86	81	1	426	36	20	10	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190