genome.fa.s223.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  33  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5775497--5775543	23	2.0	23	91	0	76	46	10	10	31	1.73
5776802--5776938	45	3.1	45	92	1	222	42	5	13	39	1.66
5776999--5777029	3	10.3	3	100	0	62	64	0	0	35	0.94
5778076--5778123	17	2.6	17	78	21	53	70	6	0	22	1.09
5778707--5778731	3	8.3	3	100	0	50	32	0	0	68	0.90
5778730--5778761	3	10.7	3	93	0	55	3	0	28	68	1.04
5778733--5778764	15	2.1	15	100	0	64	6	0	25	68	1.12
5784673--5784698	1	26.0	1	100	0	52	100	0	0	0	0.00
5786274--5786377	30	3.5	29	81	7	120	42	10	1	45	1.50
5786415--5786473	28	2.1	28	81	6	66	62	3	1	32	1.21
5787252--5787310	29	2.0	29	83	0	73	45	5	0	49	1.24
5787637--5787676	19	2.0	20	90	4	64	50	0	12	37	1.41
5787685--5787801	32	3.7	31	77	8	121	39	0	7	52	1.36
5787880--5787942	29	2.1	30	83	13	78	52	0	4	42	1.22
5787948--5787998	21	2.4	22	80	9	52	15	7	0	76	1.00
5788047--5788094	20	2.5	19	76	6	51	43	0	10	45	1.38
5789817--5789850	12	2.8	13	82	17	54	41	0	8	50	1.34
5790418--5790533	58	2.0	58	93	0	196	45	4	12	37	1.61
5794511--5794603	23	3.8	24	73	18	66	76	0	20	3	0.93
5794488--5794601	38	3.1	36	77	12	108	78	0	17	3	0.88
5794477--5794567	19	4.8	18	79	14	85	81	0	14	4	0.84
5794469--5794570	29	3.5	30	80	12	131	79	0	15	4	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5794508--5794599	20	4.8	20	73	23	72	76	0	20	3	0.93
5795650--5796159	46	11.0	46	83	5	582	37	9	15	38	1.79
5795699--5796085	71	5.5	70	84	9	463	37	9	14	37	1.79
5795646--5796159	71	7.3	69	78	13	430	37	9	14	38	1.79
5796470--5796619	41	3.6	41	84	2	158	25	12	20	42	1.86
5796470--5796646	83	2.1	82	82	1	201	25	11	19	42	1.85
5797925--5797971	24	2.0	24	95	0	85	44	0	19	36	1.51
5797953--5798083	58	2.3	58	87	2	192	46	3	10	38	1.57
5797869--5798033	84	2.0	84	91	2	271	46	3	12	38	1.58
5798074--5798098	12	2.1	12	100	0	50	52	0	32	16	1.44
5810853--5811575	251	2.8	255	82	5	841	31	23	18	27	1.97
5818507--5818542	3	12.0	3	88	11	56	30	0	0	69	0.89
5820261--5820341	39	2.1	37	81	4	90	34	7	8	49	1.62
5820523--5820572	23	2.3	22	81	18	61	54	12	6	28	1.60
5821536--5821571	14	2.5	15	95	4	65	16	0	25	58	1.38
5822547--5822580	15	2.4	14	95	5	59	29	5	23	41	1.78
5822712--5822832	36	3.4	36	88	1	181	28	5	20	44	1.75
5825592--5825937	60	5.7	59	85	6	412	41	12	4	41	1.64
5825960--5826014	5	10.4	5	96	3	83	81	0	0	18	0.68
5825957--5826079	10	12.2	10	74	17	71	70	3	1	24	1.11
5826469--5826505	19	1.9	19	94	0	65	40	21	18	18	1.91
5826811--5826964	3	48.7	3	71	19	59	67	0	3	28	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5826807--5826869	21	3.1	20	82	8	74	74	0	1	23	0.90
5826827--5826985	25	6.5	24	66	21	80	67	1	3	27	1.15
5826852--5826983	4	33.5	4	67	20	57	67	1	3	27	1.17
5826842--5826985	31	4.7	29	68	24	82	66	1	3	28	1.16
5826814--5826968	21	7.6	20	71	18	106	67	0	3	28	1.10
5826811--5826930	31	4.0	31	75	15	101	66	0	3	29	1.13
5826807--5826965	16	10.2	15	71	18	78	68	0	3	27	1.09
5827185--5827408	83	2.7	83	83	7	260	38	20	15	25	1.91
5827197--5827419	42	5.4	41	81	7	197	39	21	14	24	1.91
5828474--5828535	13	4.9	12	79	11	54	11	12	0	75	1.04
5828481--5828532	13	3.9	14	82	14	65	9	13	0	76	1.01
5839014--5839222	58	3.6	55	75	17	183	39	12	6	41	1.69
5839014--5839237	119	1.9	118	81	12	271	38	12	6	42	1.68
5839255--5839287	5	6.4	5	93	6	57	81	0	0	18	0.68
5839251--5839338	15	5.4	16	69	28	53	68	4	1	26	1.16
5839252--5839342	10	9.2	10	72	18	50	68	4	1	26	1.15
5839430--5839454	11	2.3	11	100	0	50	28	40	16	16	1.89
5840182--5840271	16	5.5	17	73	15	75	61	2	4	32	1.28
5840163--5840302	27	4.9	28	73	19	94	65	1	4	29	1.21
5840177--5840284	16	6.5	18	69	23	60	61	1	4	32	1.27
5840163--5840302	13	9.9	13	70	23	72	65	1	4	29	1.21
5840242--5840321	17	4.5	18	77	16	69	70	1	2	26	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5840268--5840322	13	4.2	13	83	6	58	72	1	3	21	1.09
5840292--5840348	22	2.5	22	81	13	71	75	7	3	14	1.14
5840278--5840356	7	11.0	7	72	10	52	75	5	2	16	1.08
5840244--5840356	14	8.1	13	73	13	57	72	3	2	21	1.12
5842629--5842671	21	2.1	21	86	4	61	69	2	4	23	1.18
5843216--5843293	38	2.1	38	83	7	97	30	10	14	44	1.78
5843671--5843709	20	2.0	19	85	5	51	61	10	5	23	1.48
5843760--5843798	14	2.9	14	88	7	55	74	0	0	25	0.82
5843762--5843804	14	3.3	13	87	6	52	74	2	0	23	0.93
5844405--5844447	22	2.0	22	90	0	68	53	0	2	44	1.13
5845250--5845278	2	14.5	2	100	0	58	51	0	0	48	1.00
5846545--5846585	18	2.3	18	100	0	82	29	4	12	53	1.58
5849582--5849659	39	2.0	39	87	5	113	25	17	17	38	1.92
5866614--5866657	22	2.0	22	95	0	79	31	11	13	43	1.80
5866807--5866867	25	2.5	26	82	15	78	16	26	18	39	1.91
5870511--5870553	22	2.0	22	95	0	77	37	11	6	44	1.68
5884252--5884313	18	3.2	18	77	11	61	14	3	38	43	1.62
5885977--5886303	146	2.2	144	78	5	345	42	11	11	34	1.77
5889193--5889301	52	2.1	52	83	11	134	39	1	2	55	1.25
5891572--5891628	26	2.2	26	83	0	69	63	5	3	28	1.33
5893440--5893478	18	2.1	19	85	9	53	61	10	0	28	1.28
5898509--5898555	24	2.0	24	83	8	60	44	0	4	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5898740--5898784	13	3.4	13	80	14	56	44	2	0	53	1.13
5898740--5898793	27	2.0	26	82	13	65	44	1	0	53	1.11
5907020--5907048	3	9.7	3	100	0	58	68	0	0	31	0.89
5908886--5909011	62	2.0	62	96	0	234	35	4	11	48	1.60
5909901--5909959	13	4.3	14	85	12	54	18	0	3	77	0.90
5909913--5909960	7	7.3	6	88	9	60	20	0	2	77	0.88
5909901--5909933	15	2.3	15	89	5	50	15	0	6	78	0.93
5909900--5909961	7	8.7	7	79	10	54	17	0	3	79	0.87
5909908--5910006	13	7.2	13	73	11	65	20	3	3	73	1.10
5909983--5910144	4	42.0	4	71	16	69	32	2	1	63	1.18
5909976--5910146	22	7.7	22	75	10	143	31	2	2	63	1.22
5910015--5910049	18	1.9	18	94	0	61	37	0	2	60	1.12
5910036--5910135	42	2.4	42	86	1	137	34	4	2	60	1.27
5909909--5910144	14	16.4	14	65	18	60	27	2	2	66	1.19
5910131--5910175	20	2.4	19	81	7	56	22	4	6	66	1.33
5910118--5910204	42	2.1	41	82	6	104	25	8	3	63	1.38
5911133--5911173	10	4.3	10	80	20	52	19	0	0	80	0.71
5911191--5911460	57	4.7	58	85	5	370	44	7	12	35	1.71
5911189--5911460	116	2.4	116	87	5	383	44	7	12	35	1.72
5915395--5915445	18	2.9	17	78	13	59	76	0	15	7	1.00
5915431--5915483	9	5.8	9	76	12	54	75	0	16	7	1.02
5915395--5915483	36	2.4	37	81	9	94	74	0	17	7	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5915425--5915482	28	2.2	26	84	12	73	77	0	17	5	0.94
5916166--5916302	63	2.2	63	82	2	168	37	8	23	30	1.85
5916706--5916763	21	2.7	22	81	10	66	37	8	20	32	1.83
5916947--5917028	43	1.9	42	90	2	128	39	12	14	34	1.84
5917340--5917754	42	9.8	42	76	12	304	27	14	19	38	1.91
5917334--5917710	84	4.5	85	80	8	421	27	14	19	38	1.91
5917334--5917710	126	3.0	126	89	0	540	27	14	19	38	1.91
5917933--5917996	34	2.0	32	82	11	78	7	3	6	82	0.92
5918007--5918167	4	39.5	4	71	16	66	32	3	1	62	1.21
5917992--5918236	22	11.5	22	67	17	92	30	3	2	63	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190