genome.fa.s223.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  85  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13641950--13642002	26	2.0	26	96	0	97	26	18	26	28	1.98
13639579--13645387	903	6.6	895	83	7	7013	25	24	24	26	2.00
13643670--13643722	26	2.0	26	96	0	97	28	20	24	26	1.99
13645942--13645994	26	2.0	26	96	0	97	24	16	28	30	1.97
13650902--13650957	26	2.2	26	96	0	103	28	19	23	28	1.98
13651800--13651855	26	2.2	26	96	0	103	28	19	23	28	1.98
13650034--13655108	898	5.7	896	87	4	6537	25	23	24	25	2.00
13653594--13653644	26	2.0	26	92	0	84	29	19	25	25	1.99
13654478--13654529	25	2.0	26	85	3	70	26	17	25	30	1.97
13655833--13655884	26	2.0	26	88	0	77	28	15	25	30	1.96
13656742--13656797	26	2.2	26	86	0	76	32	19	17	30	1.95
13655175--13660177	889	5.6	891	87	4	6741	25	23	24	26	2.00
13657632--13657681	26	1.9	26	95	0	91	30	22	24	24	1.99
13658529--13658581	26	2.0	26	92	7	90	26	15	24	33	1.95
13660215--13660267	26	2.0	26	92	0	88	26	18	24	30	1.98
13661104--13661156	26	2.0	26	92	0	88	30	20	24	24	1.99
13661993--13662045	26	2.0	26	96	0	97	24	20	26	28	1.99
13662899--13662951	26	2.0	26	88	0	79	28	16	24	30	1.97
13663522--13663574	26	2.0	26	89	7	81	28	20	20	30	1.98
13665245--13665297	26	2.0	26	96	0	97	26	24	22	26	2.00
13666155--13666211	28	2.0	27	86	6	78	24	26	22	26	2.00
13667073--13667125	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13667976--13668027	26	2.0	26	100	0	104	26	23	19	30	1.98
13669758--13669810	26	2.0	26	96	0	97	28	26	18	26	1.98
13669928--13669979	26	2.0	26	84	0	68	28	25	17	28	1.97
13670818--13670870	26	2.0	26	96	0	97	28	26	18	26	1.98
13671705--13671757	26	2.0	26	92	0	88	26	22	20	30	1.98
13672599--13672651	26	2.0	26	96	0	97	26	24	20	28	1.99
13675916--13675947	16	2.0	16	100	0	64	31	31	12	25	1.92
13676175--13676227	26	2.0	26	92	0	88	28	22	20	28	1.99
13669844--13679152	899	10.4	892	86	4	11778	25	24	24	25	2.00
13678856--13678908	26	2.0	26	92	0	88	26	26	22	24	2.00
13679704--13679755	26	2.0	26	92	7	88	26	23	21	28	1.99
13680606--13680657	26	2.0	26	92	7	88	26	23	21	28	1.99
13681513--13681565	26	2.0	26	92	0	88	30	26	16	26	1.97
13682404--13682455	26	2.0	26	96	0	95	26	28	17	26	1.97
13683249--13683298	26	1.9	26	95	0	91	24	30	18	28	1.97
13684140--13684192	26	2.0	26	96	0	97	26	24	22	26	2.00
13685044--13685096	26	2.0	26	92	0	88	26	26	20	26	1.99
13679151--13706437	902	30.5	901	75	11	18034	25	25	23	25	2.00
13685946--13685996	26	2.0	26	96	0	93	27	27	17	27	1.98
13687323--13687401	26	3.0	26	90	0	131	27	24	18	29	1.98
13688245--13688323	26	3.0	26	94	0	140	27	25	18	27	1.98
13688977--13689310	159	2.1	159	90	1	517	17	29	31	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13689888--13689940	26	2.0	26	85	7	72	30	22	16	30	1.96
13692533--13692585	26	2.0	26	82	7	63	30	22	16	30	1.96
13694290--13694342	26	2.0	26	88	0	79	24	30	18	26	1.98
13695173--13695229	26	2.2	26	90	0	96	31	21	19	28	1.97
13696079--13696130	26	2.0	26	88	3	79	25	25	23	26	2.00
13696984--13697034	26	2.0	26	92	0	84	31	21	15	31	1.95
13698730--13698782	26	2.0	26	96	0	97	26	24	20	28	1.99
13701329--13701381	26	2.0	26	92	0	88	30	26	16	26	1.97
13700462--13706437	870	6.8	885	79	9	5962	25	25	23	25	2.00
13703096--13703148	26	2.0	26	92	0	88	26	30	20	22	1.98
13703924--13703975	26	2.0	27	88	3	79	25	25	21	28	1.99
13705697--13705749	26	2.0	26	96	0	97	26	24	20	28	1.99
13706512--13706564	26	2.0	26	92	0	88	28	24	18	28	1.98
13707188--13707245	26	2.3	25	91	5	91	27	24	20	27	1.99
13708087--13708138	26	2.0	26	92	0	86	26	26	17	28	1.97
13709856--13709908	26	2.0	26	88	0	79	32	26	16	24	1.97
13710753--13717449	891	7.5	900	86	2	8672	25	24	24	25	2.00
13712535--13712584	26	1.9	26	91	0	82	30	24	14	32	1.94
13713423--13713475	26	2.0	26	96	0	97	28	26	18	26	1.98
13714317--13714366	26	1.9	26	83	0	64	26	24	22	28	1.99
13715217--13715268	26	2.0	25	96	3	95	26	26	19	26	1.99
13716992--13717044	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13718464--13718542	26	3.0	26	88	0	122	27	16	26	29	1.97
13719383--13719435	26	2.0	26	100	0	106	26	20	26	26	1.99
13717588--13728519	897	12.2	899	86	5	14154	25	24	24	25	2.00
13720271--13720323	26	2.0	26	92	0	88	28	18	24	28	1.98
13722934--13722987	27	2.0	26	89	3	81	29	20	24	25	1.99
13723828--13723883	26	2.2	26	93	3	96	26	17	30	25	1.97
13725608--13725660	26	2.0	26	88	0	79	30	18	24	26	1.98
13726504--13726556	26	2.0	26	96	0	97	26	18	26	28	1.98
13727386--13727438	26	2.0	26	96	0	97	28	20	24	26	1.99
13728286--13728338	26	2.0	26	96	0	97	26	20	24	28	1.99
13728525--13729876	709	1.9	714	87	3	1983	25	22	23	28	2.00
13730707--13730759	26	2.0	26	96	0	97	28	20	24	26	1.99
13729106--13731258	899	2.4	875	85	4	2800	25	23	24	26	2.00
13732879--13732931	26	2.0	27	88	3	81	30	20	24	24	1.99
13732454--13733223	402	1.9	398	81	7	941	23	25	28	22	1.99
13733773--13733825	26	2.0	26	96	0	97	26	18	28	26	1.98
13734675--13734727	26	2.0	26	85	7	72	26	15	28	30	1.96
13735564--13735618	26	2.2	26	93	3	94	27	18	23	30	1.97
13736467--13736517	26	2.0	26	100	0	102	27	19	25	27	1.99
13732845--13739134	903	7.0	901	86	3	8343	25	23	24	25	2.00
13737370--13737422	26	2.0	26	92	0	88	28	16	26	28	1.97
13739147--13739199	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13739622--13739681	26	2.3	26	79	2	66	63	8	6	21	1.45
13740049--13740101	26	2.0	26	92	0	88	26	26	18	28	1.98
13746642--13746694	26	2.0	26	92	7	90	28	22	20	28	1.99
13746601--13753579	867	7.9	866	83	7	7440	26	24	23	25	2.00
13749268--13749319	26	2.0	26	88	3	79	28	25	21	25	1.99
13751902--13751955	26	2.1	26	82	6	65	25	20	22	31	1.98
13748337--13753579	901	5.9	889	83	6	5554	26	24	23	25	2.00
13752931--13755001	713	2.9	712	89	2	3061	27	23	22	26	2.00
13756873--13757004	70	1.9	70	93	3	230	14	22	35	27	1.93
13758679--13758731	26	2.0	26	92	0	88	26	26	18	28	1.98
13756943--13769293	894	13.8	894	85	5	15068	25	24	24	25	2.00
13759583--13759635	26	2.0	26	92	0	88	26	26	18	28	1.98
13761360--13761412	26	2.0	26	92	0	88	26	22	22	28	1.99
13763139--13763191	26	2.0	26	96	0	97	32	26	15	26	1.95
13764958--13765010	26	2.0	26	92	0	88	28	22	20	28	1.99
13765854--13765906	26	2.0	26	88	0	79	28	20	20	30	1.98
13764714--13769293	896	5.2	899	87	3	5892	25	24	23	25	2.00
13766751--13766803	26	2.0	26	96	0	97	28	22	18	30	1.98
13767654--13767706	26	2.0	26	82	13	65	28	20	18	32	1.97
13770114--13770166	26	2.0	26	96	0	97	28	26	18	26	1.98
13771599--13771651	26	2.0	26	92	0	88	28	20	24	26	1.99
13772400--13772431	11	2.9	11	95	0	55	9	37	34	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13773424--13773476	26	2.0	26	92	0	88	28	22	24	24	2.00
13774927--13774979	26	2.0	26	92	0	88	28	20	24	26	1.99
13776706--13776776	26	2.7	26	100	0	142	30	15	26	26	1.96
13778504--13778556	26	2.0	26	96	0	97	28	20	24	26	1.99
13779390--13779442	26	2.0	26	88	0	79	30	16	24	28	1.97
13780308--13780360	26	2.0	26	88	0	79	28	16	24	30	1.97
13774638--13781305	877	7.4	894	83	6	7922	25	23	24	25	2.00
13781743--13781795	26	2.0	26	92	0	88	28	16	22	32	1.96
13780765--13781844	541	2.0	541	89	3	1647	27	24	23	25	2.00
13784382--13784434	26	2.0	26	92	0	88	26	20	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190