genome.fa.s223.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  160  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26039551--26039576	13	2.0	13	100	0	52	84	0	0	15	0.62
26040403--26040835	117	3.7	114	86	7	568	35	13	7	43	1.71
26040403--26040853	57	7.7	57	80	11	502	35	13	6	43	1.71
26040869--26040942	31	2.4	31	84	2	96	78	2	4	14	1.01
26040870--26040950	6	13.5	6	72	18	62	79	2	3	14	0.98
26040865--26040945	36	2.2	39	84	13	116	77	2	4	14	1.04
26040870--26040950	17	4.5	17	77	13	74	79	2	3	14	0.98
26040870--26040950	11	6.8	11	76	16	65	79	2	3	14	0.98
26040870--26040964	26	3.9	24	75	19	81	76	2	4	16	1.03
26041821--26041866	23	2.0	23	91	8	76	73	8	0	17	1.07
26041821--26041867	9	5.7	9	78	19	57	72	8	0	19	1.10
26041836--26041901	21	3.2	21	79	14	66	68	6	3	22	1.26
26041864--26041903	11	3.5	12	75	25	50	62	5	5	27	1.37
26041955--26042060	3	33.7	3	81	14	76	67	1	1	28	1.11
26041940--26042116	83	2.1	82	82	14	213	71	1	3	23	1.09
26042266--26042315	11	4.2	11	76	18	55	16	0	0	84	0.63
26042327--26042445	49	2.6	44	79	14	134	36	21	18	24	1.95
26042354--26042447	49	1.9	49	91	0	152	39	20	17	23	1.92
26042409--26042505	40	2.4	40	87	6	151	32	24	16	25	1.96
26043546--26043584	10	3.8	10	90	6	60	10	2	0	87	0.65
26043547--26043584	11	3.5	11	89	7	60	7	2	0	89	0.57
26043533--26043582	21	2.4	21	82	0	64	12	8	0	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26043533--26043584	10	5.0	10	86	6	59	11	7	0	80	0.89
26052285--26052787	57	8.7	56	82	6	515	35	14	7	42	1.73
26052287--26052787	58	8.7	55	79	9	412	35	14	6	42	1.73
26052287--26052723	117	3.8	116	83	6	503	36	15	6	41	1.73
26052812--26052883	22	3.3	20	75	17	65	76	2	6	13	1.10
26052802--26052897	5	18.6	5	71	18	63	75	2	6	16	1.11
26052797--26052878	38	2.2	38	84	10	114	75	2	7	14	1.12
26052802--26052883	11	7.4	11	72	15	53	76	2	6	14	1.07
26053339--26053383	19	2.4	19	84	0	54	35	15	26	22	1.94
26053732--26053830	10	9.8	10	68	15	53	66	4	4	25	1.27
26053762--26053828	21	3.2	21	80	14	68	62	5	5	25	1.41
26059968--26059999	7	4.6	7	92	0	55	59	0	0	40	0.97
26060860--26060922	33	1.9	33	86	0	90	26	14	20	38	1.91
26061201--26061657	44	10.6	43	74	10	267	27	11	15	45	1.81
26061203--26061533	87	3.8	88	82	2	337	26	12	15	45	1.81
26061204--26061657	131	3.5	130	78	6	408	27	11	15	45	1.81
26061713--26061756	8	5.2	8	84	10	61	86	0	0	13	0.57
26061715--26061753	7	5.9	7	87	6	55	89	0	0	10	0.48
26061714--26061754	9	4.7	9	87	6	66	90	0	0	9	0.46
26061713--26061756	17	2.6	18	89	10	74	86	0	0	13	0.57
26061714--26061746	10	3.4	10	95	4	59	90	0	0	9	0.44
26062708--26062739	4	7.8	4	93	6	55	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26062696--26062739	12	3.6	13	82	14	58	25	0	2	72	0.96
26062705--26062747	21	2.0	21	82	8	52	27	0	0	72	0.85
26063229--26063279	24	2.1	25	88	3	77	78	7	1	11	1.04
26063322--26063365	16	2.7	16	86	10	54	20	52	6	20	1.69
26066578--26066607	2	15.0	2	100	0	60	50	0	0	50	1.00
26067094--26067138	23	2.0	23	81	0	54	48	4	4	42	1.43
26069017--26069054	19	2.0	19	89	0	58	47	0	0	52	1.00
26070291--26070345	12	4.6	12	76	0	56	61	9	1	27	1.36
26070291--26070361	24	3.0	24	81	2	81	59	9	1	29	1.38
26070297--26070340	6	7.3	6	84	0	61	63	2	2	31	1.19
26070551--26070687	44	3.1	44	79	10	145	42	12	14	30	1.83
26070567--26070684	43	2.7	43	79	8	132	41	14	15	28	1.86
26070771--26070871	49	2.1	49	84	0	130	40	7	14	36	1.76
26072697--26072728	12	2.7	12	90	0	55	46	0	28	25	1.53
26082617--26082663	20	2.3	21	81	3	60	70	4	0	25	1.05
26083567--26083608	22	1.9	22	85	9	59	16	2	2	78	0.96
26084462--26084533	38	1.9	37	94	2	126	37	13	23	25	1.92
26084791--26084816	2	13.0	2	100	0	52	50	0	0	50	1.00
26090974--26091030	22	2.7	21	84	13	73	66	3	24	5	1.28
26103380--26103433	22	2.3	22	78	9	54	66	5	14	12	1.41
26104275--26104316	16	2.7	16	85	3	50	66	0	7	26	1.17
26108856--26108903	24	2.0	24	100	0	96	41	16	12	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26110949--26110990	16	2.7	16	88	3	59	69	2	2	26	1.13
26111792--26111832	19	2.2	19	90	0	64	26	7	9	56	1.58
26111797--26111841	19	2.4	19	88	0	63	22	11	15	51	1.75
26112093--26112139	19	2.6	18	83	6	58	53	6	2	38	1.39
26119973--26119997	6	4.2	6	100	0	50	32	0	0	68	0.90
26122837--26122864	14	2.0	14	100	0	56	14	0	0	85	0.59
26123911--26123939	12	2.4	12	100	0	58	75	6	6	10	1.17
26125260--26125395	73	1.9	73	87	6	204	52	9	8	29	1.64
26125427--26125773	40	8.8	40	73	9	194	46	7	10	35	1.67
26125459--26125733	79	3.5	77	76	5	230	45	6	10	37	1.64
26125499--26125648	39	3.8	39	75	6	133	43	4	12	40	1.62
26125560--26125613	20	2.7	21	77	13	60	44	3	11	40	1.58
26125478--26125771	79	3.7	77	72	7	180	45	7	10	36	1.65
26129198--26130529	162	8.2	160	75	7	920	44	13	8	33	1.75
26129281--26130370	162	6.7	161	77	6	921	44	13	8	33	1.75
26129473--26130529	325	3.3	323	82	3	1155	44	13	8	33	1.75
26132997--26133021	7	3.6	7	100	0	50	40	0	12	48	1.40
26133138--26133188	28	1.9	25	88	11	75	41	0	3	54	1.19
26133414--26133442	4	7.2	4	100	0	58	48	0	0	51	1.00
26138011--26138056	18	2.5	19	82	3	58	45	0	0	54	0.99
26139354--26139408	3	17.0	3	81	10	56	29	3	0	67	1.08
26139354--26139411	7	8.3	7	87	12	68	29	3	0	67	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26142457--26142495	8	4.6	8	81	12	51	12	0	5	82	0.83
26142443--26142495	26	2.1	25	85	3	70	15	0	7	77	0.98
26142465--26142532	22	3.2	21	77	6	66	16	2	7	73	1.18
26142473--26142538	22	3.0	21	79	12	71	18	3	9	69	1.28
26143201--26143262	23	2.6	22	73	12	52	11	6	6	75	1.17
26153975--26154045	9	7.9	9	90	0	61	15	0	16	67	1.23
26153975--26154045	6	11.8	6	89	0	61	15	0	16	67	1.23
26153978--26154024	3	15.7	3	90	0	67	6	0	25	68	1.13
26154023--26154049	3	9.0	3	100	0	54	33	0	0	66	0.92
26160304--26160362	29	2.0	29	100	0	118	23	13	13	49	1.78
26167228--26167387	73	2.2	73	83	4	189	30	23	19	26	1.98
26177371--26177415	14	3.2	13	82	14	54	80	2	0	17	0.82
26177372--26177414	19	2.2	20	88	12	63	79	2	0	18	0.85
26178358--26178393	19	1.9	18	88	5	54	11	2	47	38	1.54
26183421--26183489	19	3.4	19	75	21	68	26	1	8	63	1.31
26183436--26183481	24	1.9	24	90	0	74	21	2	10	65	1.35
26183441--26183486	18	2.5	19	79	13	51	23	2	10	63	1.38
26184357--26184401	13	3.4	14	81	9	58	8	11	0	80	0.92
26184707--26184757	20	2.5	21	84	12	70	25	7	13	52	1.67
26188928--26188980	23	2.5	22	81	9	65	69	0	9	20	1.15
26190889--26190994	37	2.8	38	78	1	124	30	21	11	36	1.89
26193291--26193339	15	3.5	15	70	13	50	83	0	14	2	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26196405--26196944	82	6.6	84	76	8	294	37	18	11	33	1.86
26196405--26196778	41	9.1	40	74	8	245	38	18	10	32	1.85
26196511--26196935	81	5.2	78	74	10	264	36	18	11	34	1.86
26196511--26196862	122	2.9	122	79	7	299	36	19	10	33	1.86
26196687--26196926	40	5.9	41	70	10	113	36	17	11	34	1.86
26196637--26196920	122	2.3	121	79	6	272	36	17	11	34	1.86
26197208--26197250	21	2.0	21	83	16	54	69	9	4	16	1.31
26197213--26197254	19	2.2	19	83	8	50	76	7	4	11	1.15
26199596--26199629	15	2.3	15	90	10	52	67	0	8	23	1.18
26199866--26199892	12	2.2	12	100	0	54	77	7	0	14	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190