genome.fa.s223.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  59  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9784040--9784085	11	3.7	12	81	18	58	84	6	6	2	0.84
9784040--9784085	13	3.5	13	80	8	58	84	6	6	2	0.84
9783822--9784160	124	2.7	124	96	1	610	41	12	16	28	1.85
9784347--9784405	23	2.5	24	78	13	61	20	5	3	71	1.20
9784630--9784668	18	2.2	18	95	0	69	38	7	41	12	1.72
9786427--9786753	117	2.8	115	85	5	440	44	7	12	35	1.70
9786427--9786753	59	5.6	58	84	5	408	44	7	12	35	1.70
9787301--9787357	22	2.6	22	74	17	57	17	0	10	71	1.12
9787347--9787399	24	2.2	23	90	6	79	16	3	7	71	1.24
9787301--9787397	43	2.3	42	80	10	99	17	2	9	71	1.22
9792055--9792089	18	1.9	18	88	0	52	22	2	0	74	0.95
9797378--9797457	39	2.1	39	95	0	142	33	7	21	37	1.81
9798773--9798799	9	3.0	9	100	0	54	0	22	11	66	1.22
9804892--9804944	19	2.8	19	75	11	63	18	1	28	50	1.57
9807040--9807573	144	3.8	140	72	12	408	41	14	13	30	1.84
9808108--9808166	24	2.7	21	80	19	59	72	1	6	18	1.15
9808073--9808164	17	5.5	16	71	19	55	69	1	11	17	1.24
9808191--9808227	14	2.8	13	87	4	56	81	2	0	16	0.81
9808192--9808235	19	2.2	20	84	11	56	77	2	2	18	0.98
9808390--9808423	15	2.3	15	89	0	50	61	5	29	2	1.34
9808544--9808576	5	6.6	5	100	0	66	63	0	36	0	0.95
9809521--9809554	15	2.3	15	90	10	52	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9810619--9810648	11	2.8	11	95	5	53	76	0	0	23	0.78
9810621--9810655	10	3.4	10	92	4	52	80	0	2	17	0.84
9811704--9811753	20	2.5	19	81	18	57	78	12	6	4	1.08
9812562--9812591	16	1.9	15	93	6	51	83	3	0	13	0.77
9812472--9814079	778	2.1	776	91	1	2567	39	17	16	26	1.90
9817572--9817669	34	2.9	34	79	0	88	36	15	11	36	1.83
9818113--9819091	99	9.9	99	85	0	1197	24	13	21	40	1.90
9819215--9819345	49	2.7	48	87	4	183	26	12	21	39	1.88
9819492--9819522	15	2.1	15	94	5	55	0	16	0	83	0.64
9819493--9819532	22	1.9	22	90	10	66	0	15	2	82	0.77
9820407--9820441	11	3.0	12	91	8	63	34	0	0	65	0.93
9820579--9820608	11	2.8	11	95	5	53	76	0	0	23	0.78
9820581--9820615	10	3.4	10	92	4	52	80	0	2	17	0.84
9830048--9830073	13	2.0	13	100	0	52	15	0	38	46	1.46
9830757--9830787	3	10.3	3	92	0	53	32	0	3	64	1.09
9834770--9834832	32	2.0	32	87	6	92	46	0	3	50	1.17
9834770--9834856	32	2.8	32	80	3	88	45	0	2	51	1.13
9834933--9834971	15	2.7	14	84	7	60	35	0	0	64	0.94
9838294--9838343	19	2.6	19	79	17	59	52	4	0	44	1.20
9838434--9838493	14	4.2	14	72	15	52	36	0	0	63	0.95
9838433--9838486	17	3.4	16	78	12	67	38	0	0	61	0.96
9844556--9844609	21	2.7	20	83	8	65	27	7	0	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9845170--9845348	98	1.8	98	92	0	304	40	18	14	26	1.89
9847133--9847462	145	2.3	146	79	7	386	38	15	14	32	1.87
9849350--9849509	59	2.7	60	81	5	155	30	16	15	38	1.89
9849393--9849509	60	1.9	59	86	3	162	28	16	16	39	1.90
9849578--9849692	59	1.9	58	82	8	135	28	13	13	44	1.82
9849342--9849717	179	2.1	181	82	4	440	32	13	14	39	1.85
9850040--9850162	63	2.0	63	82	6	151	41	13	11	34	1.80
9850165--9850329	61	2.7	62	78	9	178	32	13	15	38	1.86
9851125--9851331	103	2.0	102	87	8	296	33	15	13	36	1.87
9851125--9851331	51	4.0	49	85	7	270	33	15	13	36	1.87
9851750--9851799	18	2.8	18	84	0	64	36	8	26	30	1.85
9851991--9852046	21	2.7	21	85	0	76	33	16	28	21	1.95
9852150--9852230	41	2.0	41	85	0	108	32	12	20	34	1.90
9852279--9852361	42	2.0	42	92	0	139	25	9	26	38	1.86
9852028--9852441	126	3.3	127	83	1	481	31	12	21	34	1.90
9852554--9852866	127	2.5	127	88	0	455	31	11	18	37	1.87
9852917--9853209	156	2.0	146	82	8	358	27	13	19	39	1.89
9854361--9854740	133	2.8	133	82	7	383	20	15	9	54	1.68
9859476--9859517	7	6.0	7	78	10	50	28	4	0	66	1.12
9859461--9859514	21	2.7	20	86	8	74	29	7	0	62	1.22
9859482--9859520	13	2.7	15	84	11	55	30	5	0	64	1.15
9861944--9862262	144	2.2	145	80	5	342	37	15	14	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9863341--9863388	19	2.5	19	100	0	96	37	18	6	37	1.76
9863632--9863789	54	2.9	53	81	2	163	47	4	11	36	1.60
9866584--9866721	57	2.4	57	80	8	154	36	16	5	42	1.71
9866759--9866871	59	1.9	59	87	3	165	34	12	7	45	1.71
9867794--9867904	43	2.5	43	82	10	127	63	2	5	27	1.29
9867794--9867924	23	5.9	20	75	15	100	62	2	5	29	1.29
9867846--9868079	14	17.1	13	72	19	94	67	1	2	27	1.14
9867791--9867936	63	2.2	68	81	10	169	64	2	4	28	1.25
9867846--9868004	4	41.5	4	69	15	70	65	1	3	28	1.20
9867846--9868044	7	29.3	7	69	21	99	66	1	3	28	1.17
9867839--9867991	49	3.2	46	76	16	150	64	1	3	30	1.17
9867841--9867976	69	1.9	72	84	10	183	63	0	3	31	1.16
9867845--9868073	29	8.5	27	70	18	97	67	1	3	27	1.15
9867999--9868074	40	1.9	38	89	5	116	73	1	1	23	0.98
9868000--9868080	7	12.0	7	83	10	98	72	1	1	24	0.99
9867961--9868079	7	16.0	7	73	14	60	72	2	1	23	1.06
9868302--9868558	42	6.1	41	83	9	247	36	19	15	28	1.93
9868386--9868553	86	2.0	84	89	4	257	34	20	18	26	1.96
9869554--9869618	10	6.2	10	86	10	94	7	10	0	81	0.87
9869561--9869611	12	4.5	11	80	11	59	5	9	0	84	0.78
9869554--9869639	33	2.7	32	83	10	113	8	11	0	80	0.91
9869550--9869634	10	7.8	10	76	16	62	8	12	0	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9869556--9869643	38	2.5	35	82	10	99	9	11	0	79	0.93
9869587--9869643	27	2.1	27	87	6	80	10	10	0	78	0.95
9880012--9880292	59	4.8	58	81	8	327	37	13	7	41	1.72
9880671--9880696	9	2.9	9	100	0	52	0	53	0	46	1.00
9881213--9881308	20	4.6	20	75	8	75	64	3	6	26	1.32
9881258--9881334	26	3.0	24	73	16	73	66	2	5	25	1.26
9881270--9881460	4	48.2	4	65	18	64	67	2	3	27	1.17
9881278--9881341	22	2.9	22	83	6	67	65	1	4	28	1.21
9881304--9881406	27	4.0	26	74	13	70	64	1	2	31	1.19
9881250--9881431	85	2.1	83	80	14	194	64	3	3	28	1.27
9881420--9881462	14	3.0	14	81	15	52	76	0	0	23	0.78
9881817--9882990	609	1.9	609	85	1	1591	34	15	13	35	1.87
9885113--9885208	22	4.3	22	71	13	88	34	4	10	51	1.56
9885323--9885427	17	6.2	17	75	3	86	33	16	5	44	1.71
9885346--9885410	33	1.9	34	90	3	105	40	16	3	40	1.65
9885327--9885428	50	2.0	52	80	3	118	35	15	4	44	1.68
9885758--9885804	22	2.1	22	88	0	67	25	10	19	44	1.82
9886838--9887007	54	3.2	53	79	12	170	53	8	7	30	1.59
9894225--9894264	17	2.3	17	86	4	53	67	5	17	10	1.37
9894243--9894288	23	2.0	23	83	8	58	71	2	17	8	1.21
9898226--9898363	38	3.6	38	70	13	111	44	25	11	18	1.83
9898264--9898288	13	1.9	13	100	0	50	56	32	4	8	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9900142--9900168	3	9.0	3	100	0	54	66	0	0	33	0.92
9902973--9903034	26	2.6	23	82	12	63	20	1	6	70	1.17
9903179--9903216	8	4.8	8	100	0	76	65	10	0	23	1.23
9903564--9903604	3	14.0	3	94	5	75	68	0	0	31	0.90
9903569--9903645	12	5.9	13	82	13	79	57	2	1	38	1.21
9903879--9904108	119	1.9	120	85	4	320	46	17	20	15	1.83
9903908--9904316	120	3.4	119	81	4	421	45	15	21	17	1.85
9916583--9916615	3	11.3	3	87	6	50	63	0	0	36	0.95
9916610--9916652	12	3.5	12	81	15	52	48	9	2	39	1.48
9919035--9919073	21	1.9	20	94	5	69	20	2	10	66	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190