genome.fa.s223.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  76  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12401829--12401881	26	2.0	26	88	0	79	28	26	16	28	1.97
12403539--12403591	26	2.0	26	92	0	88	24	24	22	28	2.00
12404441--12404493	26	2.0	26	96	0	97	28	26	18	26	1.98
12406214--12406266	26	2.0	26	100	0	106	30	26	16	26	1.97
12407110--12407162	26	2.0	26	96	0	97	28	26	18	26	1.98
12410569--12410624	26	2.2	26	96	0	103	30	25	17	26	1.97
12412126--12412178	26	2.0	26	88	0	79	32	24	16	26	1.97
12413030--12413082	26	2.0	26	85	0	70	30	24	18	26	1.98
12417019--12417077	27	2.2	26	81	6	64	64	10	6	18	1.46
12417438--12417493	26	2.2	26	100	0	112	28	25	19	26	1.99
12418345--12418397	26	2.0	26	92	0	88	30	22	18	28	1.98
12414795--12430436	903	17.6	901	85	5	18970	25	24	24	25	2.00
12419248--12419300	26	2.0	26	92	0	88	30	22	18	28	1.98
12420147--12420197	25	2.0	25	92	3	84	29	25	17	27	1.98
12411185--12437368	898	29.5	900	84	5	30800	25	24	24	25	2.00
12421047--12421099	26	2.0	26	96	0	97	26	24	20	28	1.99
12421938--12421990	26	2.0	26	88	0	79	28	18	22	30	1.98
12422840--12422892	26	2.0	26	88	0	79	26	20	22	30	1.98
12425439--12425500	26	2.5	26	86	5	83	27	20	20	30	1.98
12428084--12428136	26	2.0	26	100	0	106	26	26	20	26	1.99
12428975--12429031	26	2.1	27	80	6	71	21	24	24	29	1.99
12428985--12429034	26	1.9	26	91	0	82	24	24	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12429882--12429934	26	2.0	26	96	0	97	26	24	20	28	1.99
12430701--12430756	26	2.2	26	90	0	85	33	25	14	26	1.94
12431610--12431658	25	2.0	25	91	0	80	26	14	22	36	1.92
12433393--12433445	26	2.0	26	92	0	88	24	24	22	28	2.00
12433869--12433926	26	2.2	26	84	3	71	58	8	10	22	1.58
12434296--12434348	26	2.0	26	100	0	106	26	26	20	26	1.99
12435188--12435240	26	2.0	26	92	0	88	26	26	20	26	1.99
12436086--12436138	26	2.0	26	92	0	88	26	26	20	26	1.99
12438132--12438164	11	3.0	11	95	0	57	18	33	27	21	1.96
12439900--12439952	26	2.0	26	92	0	88	26	18	28	26	1.98
12441685--12441737	26	2.0	26	88	0	79	24	20	26	28	1.99
12438485--12444432	894	6.6	886	82	6	6741	25	23	24	26	2.00
12444358--12444410	26	2.0	26	92	7	90	26	16	26	30	1.97
12445724--12445776	26	2.0	26	96	0	97	28	18	26	26	1.98
12446627--12446705	26	3.0	26	92	0	140	27	18	26	26	1.98
12447772--12447824	26	2.0	26	96	0	97	28	20	24	26	1.99
12447019--12451241	889	4.7	884	88	2	5754	25	23	24	26	2.00
12450445--12450495	26	2.0	26	88	0	75	27	15	27	29	1.96
12453000--12453052	26	2.0	26	85	0	70	30	20	18	30	1.97
12451382--12454018	891	3.0	876	81	8	3150	25	24	24	25	2.00
12454624--12454675	26	2.0	26	96	3	97	26	21	25	26	1.99
12453185--12455384	735	3.0	731	87	5	3073	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12454649--12458038	904	3.8	877	85	4	4431	25	23	25	25	2.00
12457115--12457167	26	2.0	26	89	7	81	28	16	26	28	1.97
12458408--12458458	26	2.0	26	96	0	93	29	19	25	25	1.99
12457797--12458552	389	1.9	392	80	5	884	23	28	28	19	1.98
12459272--12459324	26	2.0	26	92	0	88	28	22	22	26	1.99
12460143--12460195	26	2.0	26	92	0	88	28	22	22	26	1.99
12458269--12461741	871	4.0	873	89	3	4752	25	23	25	25	2.00
12461035--12461087	26	2.0	26	92	0	88	26	20	24	28	1.99
12460049--12461977	892	2.1	902	86	3	2702	25	24	25	25	2.00
12461733--12461764	12	2.7	12	95	0	55	28	25	34	12	1.92
12462581--12462639	26	2.3	26	94	5	104	25	20	27	27	1.99
12463484--12463536	25	2.2	24	89	3	79	28	20	22	28	1.99
12464377--12464429	26	2.0	26	82	7	63	24	18	22	33	1.97
12462523--12467608	876	5.7	889	86	4	6379	25	24	24	25	2.00
12467033--12467085	26	2.0	26	96	0	97	28	20	24	26	1.99
12467760--12467812	26	2.0	26	96	0	97	24	20	26	28	1.99
12466885--12468344	729	2.0	728	85	2	2004	24	25	24	25	2.00
12468662--12468714	26	2.0	26	92	0	88	28	18	24	28	1.98
12467613--12469572	885	2.2	892	86	3	2737	25	25	24	24	2.00
12470367--12470419	26	2.0	26	92	0	88	28	18	24	28	1.98
12475975--12476027	26	2.0	26	92	0	88	26	24	20	28	1.99
12477331--12477383	26	2.0	26	92	0	88	32	24	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12479112--12479163	25	2.0	26	88	3	79	25	25	21	28	1.99
12480896--12480948	26	2.0	26	100	0	106	26	26	20	26	1.99
12482697--12482749	26	2.0	26	100	0	106	26	26	20	26	1.99
12476465--12491342	872	16.9	872	83	7	16287	25	24	23	25	2.00
12487032--12487084	27	2.0	27	92	0	88	32	24	15	28	1.95
12485297--12491351	896	6.9	891	83	7	7097	26	24	23	25	2.00
12492086--12492139	26	2.0	27	85	3	74	29	24	18	27	1.98
12494751--12494803	26	2.0	26	96	0	97	28	26	18	26	1.98
12492980--12496033	902	3.4	898	85	3	4273	25	24	24	25	2.00
12496966--12497083	62	1.9	62	87	3	175	27	23	27	21	1.99
12497893--12497945	26	2.0	26	89	7	81	32	26	15	26	1.95
12497734--12498133	185	2.2	185	86	2	563	22	27	26	23	1.99
12498078--12498129	26	2.0	26	96	3	97	26	25	21	26	1.99
12500917--12500969	26	2.0	26	88	0	79	26	24	20	28	1.99
12501806--12501858	26	2.0	26	92	0	88	26	22	20	30	1.98
12502706--12502758	26	2.0	26	92	7	90	30	26	16	26	1.97
12500516--12505767	956	5.8	899	82	7	5962	25	25	24	25	2.00
12504539--12504591	26	2.0	26	96	0	97	28	26	18	26	1.98
12507185--12507237	26	2.0	26	88	0	79	30	18	24	26	1.98
12508916--12508952	14	2.6	14	95	0	65	21	35	35	8	1.83
12509683--12509735	26	2.0	26	92	0	88	30	18	24	26	1.98
12510391--12510443	26	2.0	26	92	0	88	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12511296--12511346	26	2.0	26	96	0	93	29	19	25	25	1.99
12509806--12513118	903	3.7	902	86	2	4512	25	24	23	26	2.00
12513785--12513837	26	2.0	26	96	0	97	28	16	26	28	1.97
12516146--12516198	26	2.0	26	92	0	88	28	26	20	24	1.99
12517927--12517979	26	2.0	26	100	0	106	26	26	20	26	1.99
12515472--12519781	905	4.8	899	87	3	5886	25	25	23	25	2.00
12518834--12518886	26	2.0	26	96	0	97	32	26	15	26	1.95
12519724--12519776	26	2.0	26	92	0	88	28	24	18	28	1.98
12520185--12520237	26	2.0	26	96	0	97	28	26	18	26	1.98
12521979--12522031	26	2.0	26	92	0	88	26	26	20	26	1.99
12524603--12524655	26	2.0	26	96	0	97	28	26	18	26	1.98
12525333--12525423	45	2.0	45	93	0	155	13	21	32	31	1.92
12525817--12525869	26	2.0	26	96	0	97	26	28	18	26	1.98
12529228--12529280	26	2.0	26	96	0	97	26	24	20	28	1.99
12531463--12532299	424	2.0	417	83	4	1034	24	27	24	24	2.00
12532262--12532314	26	2.0	26	96	0	97	28	26	18	26	1.98
12533136--12533202	29	2.3	29	89	0	107	29	19	23	26	1.98
12531886--12544611	902	14.3	898	81	7	13428	25	24	23	25	2.00
12537610--12537660	26	2.0	26	92	0	84	25	19	21	33	1.97
12539394--12539446	26	2.0	26	92	7	90	26	22	20	30	1.98
12540281--12540359	26	3.0	26	92	0	131	29	25	18	26	1.98
12541157--12541235	26	3.0	26	86	0	113	27	22	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12542086--12542138	26	2.0	26	92	7	90	30	26	16	26	1.97
12535843--12540699	898	5.4	868	80	8	3703	25	24	24	25	2.00
12535843--12544611	865	9.8	869	77	10	6563	25	24	23	25	2.00
12545432--12545484	26	2.0	26	96	0	97	28	26	18	26	1.98
12546332--12546387	26	2.2	26	93	0	94	32	25	16	26	1.96
12547233--12547285	26	2.0	26	96	0	97	28	26	18	26	1.98
12548127--12548179	26	2.0	26	100	0	106	26	26	20	26	1.99
12548979--12549039	26	2.4	26	91	5	99	24	19	22	32	1.97
12551617--12551669	26	2.0	26	100	0	106	26	26	20	26	1.99
12552502--12552554	26	2.0	26	92	0	88	28	26	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190