genome.fa.s223.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  28  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4749640--4750959	186	7.2	186	76	8	1114	37	15	23	24	1.93
4750908--4751028	36	3.4	36	68	16	97	42	18	19	19	1.90
4750882--4751031	72	2.1	72	87	5	214	41	16	20	22	1.90
4750955--4751217	99	2.8	92	78	11	279	38	17	21	22	1.93
4751139--4751286	72	2.1	72	89	2	226	39	14	22	24	1.91
4751264--4751314	18	2.8	18	78	0	57	45	17	21	15	1.86
4751414--4751483	36	1.9	36	91	0	113	41	10	21	27	1.85
4751606--4751645	18	2.2	18	95	0	71	47	17	17	17	1.83
4753394--4753438	23	1.9	24	86	4	65	48	2	0	48	1.13
4759865--4759894	13	2.2	14	94	5	53	0	10	0	90	0.47
4761562--4761636	37	2.0	37	92	0	123	34	20	10	34	1.87
4774998--4775091	36	2.7	34	82	9	109	60	4	5	29	1.38
4775116--4775164	18	2.9	17	79	8	55	53	4	0	42	1.20
4775299--4775346	18	2.8	17	84	6	69	31	2	2	64	1.16
4775350--4775420	37	2.0	35	83	8	90	23	4	4	67	1.26
4775607--4775650	17	2.6	17	81	0	52	36	2	2	59	1.23
4775542--4775647	56	1.9	54	83	9	133	28	4	2	64	1.28
4775542--4775647	55	1.9	54	83	7	133	28	4	2	64	1.28
4775625--4775718	37	2.5	38	75	10	95	37	4	2	56	1.31
4779729--4779766	15	2.4	16	82	8	51	47	2	0	50	1.15
4781947--4782093	52	2.8	52	80	6	172	27	22	7	42	1.80
4782412--4782459	24	2.0	24	91	4	78	22	41	4	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4782391--4782488	49	2.0	49	82	4	117	23	34	5	36	1.77
4782391--4782512	25	5.0	24	74	5	91	22	34	6	36	1.81
4783073--4783202	52	2.5	52	86	2	190	25	20	8	46	1.78
4783227--4783257	11	2.8	11	90	0	53	51	25	0	22	1.48
4783505--4783623	25	4.8	25	81	8	127	23	31	5	40	1.76
4783505--4783598	49	1.9	50	85	10	131	23	32	5	38	1.77
4783505--4783645	25	5.7	26	77	12	111	23	31	6	39	1.80
4783505--4783645	74	1.9	73	81	5	167	23	31	6	39	1.80
4784179--4784335	52	3.0	52	82	5	192	25	23	8	42	1.83
4784360--4784401	11	3.8	11	87	0	66	50	26	0	23	1.50
4784360--4784402	22	2.0	22	95	0	77	48	25	0	25	1.51
4787488--4787580	36	2.7	34	81	8	107	62	3	5	29	1.33
4787605--4787653	18	2.9	17	79	8	55	53	4	0	42	1.20
4787843--4787913	37	2.0	35	83	8	90	23	4	4	67	1.26
4787928--4787991	20	3.2	20	82	4	74	37	3	4	54	1.37
4788038--4788091	27	2.0	27	85	7	74	29	7	0	62	1.22
4788032--4788097	19	3.1	19	69	29	51	28	6	0	65	1.17
4788035--4788143	46	2.4	45	80	10	107	33	4	0	60	1.23
4788109--4788201	37	2.5	38	75	11	95	37	4	2	55	1.31
4788298--4788357	31	1.9	32	82	3	77	60	3	0	36	1.14
4792122--4792239	63	1.9	62	83	11	152	50	1	1	45	1.21
4792222--4792259	15	2.4	16	82	8	51	47	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4796989--4797027	18	2.2	18	85	0	51	38	2	10	48	1.51
4809438--4809477	15	2.6	16	88	11	57	45	0	0	55	0.99
4809566--4809603	15	2.4	16	82	8	51	47	2	0	50	1.15
4814339--4814363	2	12.5	2	100	0	50	0	0	48	52	1.00
4822153--4822195	22	2.0	22	81	9	52	67	0	0	32	0.91
4826234--4826266	16	2.1	16	94	0	57	36	0	9	54	1.32
4826246--4826292	24	1.9	25	91	4	78	25	0	8	65	1.20
4826415--4826476	18	3.4	18	72	12	63	77	0	6	16	0.97
4826409--4826474	23	2.6	24	79	15	62	75	1	6	16	1.07
4826821--4826868	10	4.5	11	79	12	55	72	16	2	8	1.18
4826819--4826868	12	4.8	10	79	16	57	70	20	2	8	1.23
4827305--4827349	13	3.5	13	82	14	58	60	2	2	35	1.22
4827568--4827641	30	2.4	30	80	10	96	44	6	1	47	1.38
4827645--4827672	14	2.0	14	100	0	56	50	7	0	42	1.30
4833318--4833398	30	2.8	28	76	9	81	60	2	2	34	1.23
4855918--4855949	5	6.4	5	92	0	55	0	43	0	56	0.99
4864394--4864418	6	4.2	6	100	0	50	16	0	16	68	1.22
4871359--4871384	13	2.0	13	100	0	52	23	0	0	76	0.78
4872221--4872255	18	1.9	18	88	0	52	71	0	0	28	0.86
4881167--4881200	18	1.9	17	88	5	50	64	0	8	26	1.22
4881684--4881726	23	1.9	22	85	4	59	53	2	2	41	1.26
4895461--4895494	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4902965--4903002	19	2.0	20	89	5	60	36	2	0	60	1.11
4902965--4903013	19	2.7	18	77	22	57	36	2	0	61	1.08
4903259--4903462	106	1.9	106	92	2	347	35	8	5	50	1.57
4906841--4906879	21	1.9	21	89	5	62	43	5	25	25	1.75
4908608--4908656	23	2.0	24	84	7	64	38	10	4	46	1.57
4908622--4908677	22	2.5	23	82	2	60	39	3	0	57	1.16
4908747--4908784	19	2.1	19	90	5	60	63	5	0	31	1.17
4909239--4909272	16	2.1	17	88	5	52	58	0	0	41	0.98
4912751--4912798	8	6.0	8	97	0	87	35	2	37	25	1.68
4913155--4913207	22	2.4	21	82	17	56	39	0	7	52	1.30
4913319--4913603	140	2.0	143	84	7	375	33	15	7	43	1.74
4913943--4913992	22	2.1	25	85	10	70	32	0	14	54	1.40
4914540--4914577	19	2.0	19	85	10	51	26	10	10	52	1.68
4914523--4914586	29	2.2	29	83	5	76	23	9	10	56	1.63
4916129--4916187	16	3.4	16	76	21	57	50	1	5	42	1.34
4916129--4916182	18	3.3	15	82	12	54	51	1	5	40	1.36
4920598--4920639	18	2.4	16	85	14	57	76	2	2	19	1.01
4920610--4920651	17	2.5	17	80	7	50	73	4	0	21	1.01
4920849--4920900	14	3.7	14	80	7	61	55	26	0	17	1.42
4920832--4920922	29	3.2	28	75	9	78	50	29	1	18	1.54
4920929--4921116	27	6.8	29	70	17	109	43	34	0	22	1.53
4921015--4921074	27	2.2	27	96	0	111	41	35	0	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4921072--4921149	38	2.1	38	82	4	95	50	28	0	21	1.49
4921093--4921137	24	1.9	24	86	4	65	48	28	0	22	1.50
4921120--4921199	29	2.8	29	85	7	110	51	30	1	17	1.53
4921119--4921170	14	3.7	15	78	12	58	55	26	0	17	1.42
4921102--4921191	28	3.1	29	79	12	103	51	27	0	21	1.48
4921246--4921326	28	2.9	27	83	7	108	50	29	0	19	1.48
4921231--4921326	14	6.7	14	69	9	52	50	31	0	18	1.48
4921247--4921367	14	8.4	14	68	15	77	49	31	0	18	1.53
4922757--4922791	18	1.9	18	94	0	61	28	0	5	65	1.15
4924063--4924108	13	3.6	13	75	13	51	43	8	8	39	1.66
4924849--4924891	21	2.1	20	82	4	50	46	0	11	41	1.40
4927442--4927491	26	2.0	26	84	4	66	40	2	2	56	1.22
4927986--4928016	2	15.5	2	93	0	53	48	0	0	51	1.00
4931648--4931702	28	2.0	28	92	0	92	65	5	10	18	1.42
4938393--4938433	21	2.0	21	86	9	59	70	2	2	24	1.11
4941435--4941460	12	2.2	12	100	0	52	34	26	7	30	1.85
4943640--4943675	2	18.0	2	100	0	72	50	0	50	0	1.00
4949141--4949236	50	1.9	50	82	4	122	52	7	9	31	1.61
4950373--4950452	22	3.4	22	64	21	54	25	21	6	47	1.73
4950345--4950447	50	2.1	49	94	1	179	24	22	5	47	1.73
4959949--4960215	42	6.4	42	85	6	330	25	10	20	43	1.84
4959949--4960248	42	7.1	41	84	3	323	25	11	21	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4959949--4960248	83	3.6	82	84	5	343	25	11	21	41	1.86
4959961--4960224	125	2.1	127	85	8	351	25	11	20	43	1.85
4961370--4961417	25	1.9	25	83	8	62	47	2	8	41	1.45
4961329--4961666	185	1.8	181	85	7	477	46	7	9	36	1.64
4963768--4963809	14	2.9	15	86	13	54	66	2	0	30	1.04
4963773--4963815	15	2.9	14	86	13	52	65	4	0	30	1.13
4964336--4964373	2	19.0	2	94	0	67	47	0	2	50	1.15
4967782--4967896	58	1.9	59	86	8	162	21	5	11	61	1.49
4969834--4969876	3	14.0	3	90	9	61	34	0	0	65	0.93
4969838--4969889	9	5.1	10	80	15	54	36	3	0	59	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190