genome.fa.s223.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  81  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13084320--13089500	902	5.8	904	88	2	7229	25	25	24	25	2.00
13089001--13089053	26	2.0	26	88	0	79	30	24	16	28	1.97
13089811--13089860	25	2.0	26	96	4	93	26	24	20	30	1.98
13090702--13090754	26	2.0	26	88	0	79	28	24	18	28	1.98
13089501--13094203	892	5.3	895	86	3	6200	25	24	24	25	2.00
13092465--13092517	26	2.0	26	88	0	79	28	24	18	28	1.98
13093367--13093419	26	2.0	26	96	0	97	28	26	18	26	1.98
13096067--13096119	26	2.0	26	92	0	88	26	16	26	30	1.97
13094321--13101064	892	7.6	894	80	7	6901	25	23	25	26	2.00
13097848--13097900	26	2.0	26	96	0	97	24	20	28	26	1.99
13098743--13098795	26	2.0	26	89	7	81	26	15	26	32	1.95
13097037--13101062	904	4.5	900	85	4	5193	25	23	25	26	2.00
13102005--13102053	26	1.9	25	91	4	80	26	20	24	28	1.99
13103806--13103853	25	1.9	25	95	0	87	25	14	29	31	1.95
13101060--13109201	903	9.2	903	85	5	9920	25	24	24	25	2.00
13104703--13104754	26	2.0	26	92	0	86	25	17	26	30	1.97
13105604--13105655	26	2.0	26	96	0	95	25	19	26	28	1.98
13108182--13108233	25	2.0	26	85	10	72	28	17	21	32	1.96
13109075--13109127	26	2.0	26	92	0	88	26	24	22	26	2.00
13109807--13109859	26	2.0	26	88	0	79	26	20	24	28	1.99
13109101--13117751	899	9.8	899	84	7	10525	25	24	24	25	2.00
13111824--13111854	16	1.9	16	93	0	53	9	25	64	0	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13114192--13114243	26	2.0	26	92	0	86	28	17	26	26	1.97
13115057--13115109	26	2.0	26	96	0	97	28	20	24	26	1.99
13115942--13115994	26	2.0	26	92	0	88	28	18	26	26	1.98
13112494--13117735	886	5.9	892	84	7	6292	25	24	25	25	2.00
13116842--13116917	26	2.9	26	90	7	127	27	15	26	30	1.96
13115942--13117735	925	1.9	925	87	3	2626	26	23	24	25	2.00
13118596--13118650	26	2.1	26	96	0	101	29	18	23	29	1.98
13119468--13119520	26	2.0	26	92	0	88	28	18	24	28	1.98
13117749--13120967	877	3.6	881	85	5	4021	25	23	25	25	2.00
13120380--13120432	26	2.0	26	92	0	88	28	15	24	32	1.95
13121040--13121089	26	1.9	26	95	0	91	28	22	18	32	1.97
13121912--13121964	26	2.0	26	85	0	70	30	22	18	28	1.98
13122807--13122857	26	2.0	26	88	0	75	29	21	19	29	1.98
13121584--13124656	901	3.4	900	88	3	4387	24	26	24	24	2.00
13123707--13123766	26	2.4	25	81	13	79	28	26	18	26	1.98
13124604--13124671	26	2.6	26	90	0	109	25	22	22	30	1.99
13126218--13126270	26	2.0	26	96	0	97	24	26	20	28	1.99
13127116--13127170	25	2.2	26	96	3	103	29	21	20	29	1.98
13128914--13128966	26	2.0	26	92	0	88	28	24	18	28	1.98
13125346--13131307	896	6.7	895	86	4	7957	26	24	23	25	2.00
13130668--13130720	26	2.0	26	88	0	79	26	22	22	28	1.99
13133357--13133383	11	2.5	11	100	0	54	18	37	33	11	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13133963--13134015	26	2.0	26	96	0	97	28	26	18	26	1.98
13133152--13134671	739	2.0	732	83	6	1916	26	24	22	26	2.00
13134886--13134955	26	2.7	26	100	0	140	28	27	15	28	1.96
13133963--13136190	921	2.4	918	82	6	2629	25	24	23	26	2.00
13135800--13135852	26	2.0	26	92	0	88	32	24	16	26	1.97
13138963--13139015	26	2.0	26	92	0	88	30	26	16	26	1.97
13136189--13140292	901	4.6	890	84	5	5251	24	24	24	25	2.00
13143676--13143728	26	2.0	26	92	0	88	26	16	26	30	1.97
13146037--13146087	26	2.0	26	88	0	75	27	23	17	31	1.97
13146063--13148245	706	3.1	709	88	4	3144	27	23	23	26	2.00
13148357--13148407	26	2.0	26	92	0	84	25	23	21	29	1.99
13149258--13149307	26	1.9	26	95	0	91	26	26	20	28	1.99
13150154--13150206	26	2.0	26	85	0	70	30	26	16	26	1.97
13147484--13151831	894	4.9	898	87	2	5951	25	24	24	25	2.00
13151776--13163679	901	13.5	900	80	8	11822	25	24	24	25	2.00
13157104--13157156	26	2.0	26	85	7	72	24	24	16	33	1.96
13158006--13158058	26	2.0	26	96	0	97	28	22	18	30	1.98
13158907--13158959	26	2.0	26	92	0	88	26	26	20	26	1.99
13161476--13161528	26	2.0	26	92	0	88	24	24	22	28	2.00
13162320--13162372	26	2.0	26	92	0	88	28	30	16	24	1.97
13160613--13163699	886	3.5	848	83	7	3321	25	24	23	26	2.00
13164908--13164960	26	2.0	26	92	7	90	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13165793--13165864	26	2.8	25	89	6	117	29	22	19	29	1.98
13163696--13166791	900	3.5	887	81	8	3467	25	25	24	24	2.00
13166696--13166748	26	2.0	26	96	0	97	28	26	18	26	1.98
13167509--13167558	26	1.9	26	95	0	91	26	26	20	28	1.99
13165994--13168064	811	2.6	803	94	1	3556	28	23	22	25	1.99
13168125--13173280	876	5.9	831	73	13	2600	26	23	24	25	2.00
13169094--13169151	26	2.2	26	84	9	73	32	22	17	27	1.96
13170893--13170944	26	2.0	26	88	7	79	32	26	13	26	1.94
13168264--13173417	904	5.9	872	83	6	5800	26	23	24	25	2.00
13174204--13174255	26	2.0	26	92	3	88	30	26	15	26	1.96
13176871--13176923	26	2.0	26	92	0	88	28	24	18	28	1.98
13177895--13177950	25	2.2	25	93	0	94	19	33	33	12	1.89
13177900--13177941	14	3.2	14	74	19	54	23	38	28	9	1.86
13179595--13179647	26	2.0	26	88	0	79	30	24	16	28	1.97
13183129--13183181	26	2.0	26	92	0	88	30	26	16	26	1.97
13180630--13184053	866	3.9	868	83	4	4072	26	24	23	25	2.00
13183993--13184044	26	2.0	25	88	3	77	26	23	23	26	2.00
13184304--13184356	26	2.0	26	96	0	97	26	24	20	28	1.99
13185209--13185262	25	2.0	28	83	16	71	25	24	22	27	2.00
13184204--13188859	865	5.3	893	81	9	4999	25	24	24	25	2.00
13188720--13188772	26	2.0	26	88	0	79	28	22	18	30	1.98
13189034--13189086	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13191493--13191544	26	2.0	26	84	0	68	26	28	17	26	1.97
13192372--13192424	26	2.0	26	92	0	88	28	24	18	28	1.98
13193254--13193306	26	2.0	26	96	0	97	32	24	16	26	1.97
13190837--13193957	882	3.5	887	85	5	3775	26	25	22	25	2.00
13196493--13196543	26	2.0	26	96	0	93	29	25	17	27	1.98
13195633--13203730	882	8.9	884	73	13	5568	25	24	24	25	2.00
13199243--13199376	68	2.0	68	90	0	214	18	30	29	21	1.97
13200110--13200162	26	2.0	26	96	0	97	26	24	20	28	1.99
13200816--13201183	158	2.3	159	87	1	515	19	29	29	21	1.98
13201157--13201209	26	2.0	26	96	0	97	28	26	18	26	1.98
13202050--13202128	26	3.0	26	96	0	149	29	26	17	26	1.98
13204552--13204604	26	2.0	26	88	0	79	28	26	16	28	1.97
13207978--13208030	26	2.0	26	92	7	90	26	22	22	28	1.99
13208881--13208933	26	2.0	26	96	0	97	28	20	26	24	1.99
13207251--13210682	892	3.8	897	86	2	4683	25	23	24	25	2.00
13209770--13209822	26	2.0	26	92	7	90	26	16	26	30	1.97
13212249--13212301	26	2.0	26	92	0	88	26	20	26	26	1.99
13212481--13212510	4	7.5	4	92	0	51	3	26	70	0	1.03
13214942--13214992	26	2.0	26	92	0	84	31	19	25	23	1.98
13216724--13216776	26	2.0	26	92	0	88	28	18	24	28	1.98
13211379--13227540	903	18.2	899	83	5	18675	25	23	24	26	2.00
13219404--13219456	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13218528--13227540	922	10.2	899	82	6	10102	25	23	24	26	2.00
13220315--13220384	26	2.7	26	97	0	131	32	15	21	30	1.94
13221228--13221280	26	2.0	26	100	0	106	26	20	26	26	1.99
13223009--13223058	26	1.9	26	95	0	91	28	16	24	32	1.96
13223903--13223954	25	2.0	26	92	3	88	28	19	23	28	1.98
13227330--13227380	26	2.0	26	96	0	93	27	13	27	31	1.94
13227321--13227724	185	2.2	184	86	2	542	22	26	29	21	1.99
13229280--13229332	26	2.0	26	96	0	97	26	18	26	28	1.98
13229465--13229517	26	2.0	26	92	0	88	28	18	24	28	1.98
13229258--13229675	185	2.3	184	87	2	606	21	27	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190