genome.fa.s223.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  44  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7501753--7501873	62	2.0	61	85	8	165	48	5	8	37	1.57
7503905--7503955	25	2.0	25	84	0	66	27	9	17	45	1.80
7504362--7504387	12	2.2	12	100	0	52	76	0	0	23	0.78
7504497--7504579	36	2.3	37	84	14	111	31	2	10	55	1.47
7504806--7504841	2	18.0	2	100	0	72	50	0	0	50	1.00
7505498--7505535	18	2.1	18	95	0	67	50	13	0	36	1.42
7505496--7505534	20	2.0	20	100	0	78	51	12	0	35	1.40
7505492--7505530	2	19.5	2	94	0	51	51	7	0	41	1.31
7509912--7509963	21	2.5	21	84	6	61	53	0	44	1	1.11
7512093--7512262	8	21.9	8	73	10	129	21	1	28	48	1.58
7512082--7512259	46	3.9	44	78	13	182	20	1	29	48	1.59
7512095--7512259	23	7.1	22	74	15	120	21	1	29	48	1.58
7515701--7515826	50	2.6	48	81	5	139	21	12	9	56	1.64
7515701--7515814	47	2.4	46	83	5	129	22	12	7	57	1.58
7517599--7517642	18	2.5	18	81	3	54	31	6	22	38	1.81
7517785--7517815	15	2.1	15	93	0	53	35	12	16	35	1.87
7517929--7518108	97	1.8	98	87	1	272	33	14	11	40	1.82
7518113--7518214	51	2.1	49	88	5	152	36	13	3	46	1.62
7518674--7518831	79	2.0	79	83	2	201	32	24	8	34	1.86
7519423--7519504	34	2.3	36	77	10	89	14	15	0	69	1.19
7519423--7519507	35	2.4	34	80	7	91	15	16	0	68	1.22
7519456--7519507	9	5.9	9	76	13	54	13	15	0	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7520413--7520449	19	2.0	19	85	15	51	59	10	0	29	1.31
7522824--7522868	15	3.2	15	81	18	69	53	0	0	46	1.00
7522826--7522865	3	13.3	3	89	0	62	60	0	0	40	0.97
7522933--7522981	23	2.2	22	88	3	71	14	57	16	12	1.66
7523909--7523949	19	2.3	19	83	8	50	17	0	7	75	1.02
7524221--7524263	13	3.1	13	81	15	50	67	2	2	27	1.15
7524222--7524264	15	2.9	15	86	10	54	67	2	2	27	1.15
7526177--7526272	50	1.9	50	85	4	131	28	14	9	47	1.75
7532140--7532258	63	1.9	63	96	0	220	36	9	10	43	1.70
7535133--7535169	2	18.5	2	100	0	74	51	0	0	48	1.00
7535530--7535563	17	2.1	17	88	5	52	44	8	5	41	1.60
7535598--7535720	30	4.1	29	82	8	117	36	4	21	38	1.72
7536675--7536713	21	1.9	20	84	5	51	41	2	10	46	1.51
7542568--7542600	4	8.8	4	87	12	52	75	0	0	24	0.80
7542558--7542599	7	6.0	7	89	10	59	73	2	0	23	0.94
7542563--7542600	18	2.1	18	90	9	60	76	0	0	23	0.79
7550012--7550233	56	3.8	57	83	7	268	39	10	6	43	1.65
7550012--7550233	115	1.9	117	85	4	306	39	10	6	43	1.65
7550251--7550315	5	12.4	5	81	12	69	76	0	3	20	0.91
7550347--7550381	3	11.7	3	93	0	61	68	2	0	28	1.04
7551167--7551197	15	2.1	15	93	0	53	74	0	3	22	0.96
7551166--7551251	30	3.0	29	74	15	81	65	2	3	29	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7554140--7554164	13	1.9	13	100	0	50	52	16	0	32	1.44
7577462--7578020	275	2.0	276	95	0	994	24	25	10	39	1.87
7580880--7580962	24	3.4	24	73	14	64	71	2	7	19	1.21
7581768--7581822	3	18.3	3	100	0	110	67	0	0	32	0.91
7582618--7582705	30	2.9	30	84	0	131	50	0	11	38	1.39
7586983--7587015	15	2.1	16	88	5	50	33	9	9	48	1.66
7588802--7588841	18	2.2	18	86	0	53	37	0	5	57	1.21
7588820--7588871	25	2.0	26	88	3	79	44	0	0	55	0.99
7588819--7588868	12	4.1	12	82	14	57	46	0	0	54	1.00
7588825--7588933	26	4.2	26	70	12	73	46	2	0	49	1.22
7588986--7589082	10	9.3	10	66	12	52	51	4	1	43	1.27
7588975--7589102	21	6.1	21	80	5	152	51	3	0	44	1.22
7588975--7589022	20	2.3	20	89	3	69	52	2	2	43	1.24
7588957--7589067	14	7.1	16	70	20	74	49	4	0	45	1.28
7588973--7589082	43	2.6	41	82	2	139	50	4	0	44	1.28
7589151--7589485	11	32.2	11	63	22	84	38	1	3	56	1.23
7589193--7589231	18	2.2	17	90	4	60	46	0	0	53	1.00
7589186--7589257	30	2.5	28	82	10	76	40	2	0	56	1.13
7589196--7589286	45	2.0	45	87	4	130	41	1	3	53	1.24
7589198--7589267	18	4.4	17	69	23	55	41	1	1	55	1.17
7589277--7589550	22	12.8	22	67	23	83	41	1	1	56	1.15
7589275--7589379	40	2.6	40	75	11	99	40	0	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7589280--7589368	39	2.2	40	78	11	94	38	1	1	59	1.12
7589208--7589394	69	2.8	67	78	8	200	39	1	2	56	1.21
7589199--7589887	186	3.8	181	71	19	508	40	1	2	54	1.24
7589613--7589706	11	8.2	11	68	23	52	42	0	3	54	1.16
7589625--7589701	30	2.6	29	85	2	91	41	0	3	54	1.19
7589656--7589708	20	2.7	18	75	18	52	35	0	1	62	1.06
7589746--7589843	28	3.7	28	71	20	84	40	1	2	56	1.18
7589831--7589893	27	2.3	26	78	7	72	39	1	0	58	1.07
7590505--7590530	3	8.7	3	100	0	52	69	0	0	30	0.89
7596315--7596554	54	4.5	54	69	15	133	47	7	7	37	1.59
7597181--7597418	118	2.0	118	100	0	476	42	14	11	31	1.82
7597406--7597508	18	5.6	18	74	12	75	62	3	0	33	1.20
7597417--7597527	18	5.9	18	76	12	107	59	3	0	36	1.21
7597755--7597808	26	2.1	26	86	3	74	35	1	0	62	1.06
7597760--7597824	26	2.5	25	78	11	69	33	1	3	61	1.21
7597818--7597856	18	2.3	17	86	8	53	35	0	2	61	1.10
7597844--7597916	29	2.5	28	80	10	76	30	5	5	58	1.43
7597888--7597936	20	2.4	20	86	10	64	38	6	2	53	1.38
7597902--7597976	36	2.1	36	85	5	98	33	4	2	60	1.30
7597911--7597963	26	2.0	27	85	3	72	37	3	1	56	1.28
7597869--7597962	48	1.9	49	85	10	131	37	4	3	55	1.36
7598025--7598189	9	18.4	8	67	19	60	30	4	3	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7598031--7598065	16	2.2	16	90	5	54	22	11	2	62	1.41
7598026--7598065	16	2.5	15	84	11	53	22	10	2	65	1.35
7598050--7598107	27	2.1	27	84	6	73	27	1	5	65	1.23
7598064--7598189	8	14.1	8	70	23	58	32	2	3	61	1.24
7598018--7598202	65	2.9	62	81	10	194	33	3	2	60	1.29
7598068--7598172	19	5.1	19	68	20	59	33	1	2	61	1.21
7598088--7598181	17	5.2	17	70	23	61	35	3	1	60	1.20
7599168--7599393	125	1.8	124	80	8	271	34	14	12	37	1.85
7600122--7600190	24	2.9	24	95	0	120	20	7	23	49	1.73
7611311--7611355	18	2.5	18	86	10	65	64	0	0	35	0.94
7611729--7611773	21	2.1	21	100	0	90	42	24	0	33	1.55
7617008--7617048	17	2.5	17	85	14	59	58	2	0	39	1.11
7617016--7617058	18	2.4	19	80	11	54	60	2	0	37	1.10
7618564--7619015	224	2.0	222	93	0	769	45	14	7	32	1.73
7619266--7619345	9	8.6	9	73	15	65	35	2	1	61	1.18
7619254--7619345	46	2.0	46	83	8	116	35	2	2	59	1.21
7619274--7619365	29	3.3	28	83	11	109	35	3	3	57	1.31
7619303--7619374	29	2.4	30	81	2	92	30	2	2	63	1.22
7619375--7619421	20	2.3	21	74	3	51	27	4	10	57	1.51
7619435--7619490	29	2.0	28	89	3	85	32	0	3	64	1.11
7619291--7619492	29	6.9	29	65	20	82	32	1	4	60	1.28
7620604--7620657	19	2.7	19	78	13	56	42	0	5	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7621001--7621076	28	2.8	26	75	23	68	67	10	0	22	1.21
7621044--7621103	20	3.2	19	76	13	70	68	1	0	30	0.99
7622186--7622227	21	2.0	20	82	13	50	59	4	19	16	1.54
7623045--7623159	3	39.7	3	83	6	130	31	4	1	62	1.25
7622981--7623154	41	4.4	41	75	16	154	32	5	2	59	1.34
7624174--7624210	17	2.2	18	85	9	51	56	10	0	32	1.34
7628800--7628877	38	2.1	38	80	4	86	71	2	14	11	1.24
7629978--7630278	122	2.5	121	77	6	297	21	22	12	42	1.87
7630609--7630682	31	2.4	31	86	6	96	36	4	4	55	1.38
7630660--7630755	3	33.3	3	77	8	101	31	6	1	61	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190