genome.fa.s223.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  102  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16047318--16056244	888	10.0	897	85	5	10897	25	24	24	25	2.00
16053443--16053493	26	2.0	26	84	7	68	29	17	21	31	1.96
16054335--16054387	26	2.0	26	85	0	70	24	18	26	30	1.98
16056103--16056155	26	2.0	26	100	0	106	26	20	26	26	1.99
16056288--16056340	26	2.0	26	92	0	88	28	18	24	28	1.98
16057185--16057237	26	2.0	26	88	0	79	28	22	22	26	1.99
16058939--16058991	26	2.0	26	92	7	90	26	16	26	30	1.97
16058061--16059868	903	2.0	904	87	3	2593	25	24	24	25	2.00
16059188--16060594	715	2.0	715	90	1	2259	26	23	23	26	2.00
16061421--16061472	26	2.0	26	88	0	77	30	15	25	28	1.96
16062322--16062374	26	2.0	26	92	0	88	28	18	26	26	1.98
16059813--16063250	874	3.9	897	87	3	4740	25	23	24	26	2.00
16064308--16064360	26	2.0	26	85	0	70	30	20	20	28	1.98
16065201--16065253	26	2.0	26	92	0	88	24	18	26	30	1.98
16063590--16065581	893	2.2	893	86	3	2801	25	23	25	25	2.00
16067390--16067442	26	2.0	26	96	0	97	26	24	20	28	1.99
16067264--16067465	101	2.0	101	89	0	305	21	22	26	29	1.99
16069140--16069192	26	2.0	26	85	0	70	26	22	20	30	1.98
16068232--16075256	877	7.9	883	85	4	8602	26	24	23	25	2.00
16070017--16070069	26	2.0	26	96	0	97	30	24	16	28	1.97
16070907--16070959	26	2.0	26	85	0	70	30	22	18	28	1.98
16071811--16071863	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16072712--16072764	26	2.0	26	88	0	79	28	24	20	26	1.99
16069116--16075256	903	6.9	899	86	3	7871	26	24	23	25	2.00
16076104--16076155	26	2.0	26	96	0	95	28	26	19	25	1.98
16077008--16077059	26	2.0	26	100	0	104	30	26	15	26	1.96
16075226--16078356	904	3.5	904	89	0	4606	25	24	24	25	2.00
16078555--16078580	12	2.2	12	100	0	52	0	73	19	7	1.07
16078761--16078813	26	2.0	26	96	0	97	26	24	20	28	1.99
16078355--16084300	897	6.6	895	86	3	7470	25	25	24	24	2.00
16081440--16081492	26	2.0	26	88	0	79	30	24	18	26	1.98
16082333--16082385	26	2.0	26	88	0	79	28	26	16	28	1.97
16083238--16083290	26	2.0	26	96	0	97	26	24	20	28	1.99
16084126--16084177	26	2.0	26	85	10	72	25	23	19	32	1.97
16086378--16086433	26	2.2	26	100	0	112	28	25	19	26	1.99
16086501--16087073	301	1.9	301	90	2	920	22	23	26	27	1.99
16087560--16087612	26	2.0	26	92	0	88	28	28	18	24	1.98
16091154--16091206	26	2.0	26	100	0	106	26	26	20	26	1.99
16089528--16093887	910	4.8	890	77	12	3694	26	24	23	25	2.00
16094793--16094845	26	2.0	26	96	0	97	26	18	26	28	1.98
16095692--16095742	25	2.0	25	88	0	75	29	19	23	27	1.98
16094015--16096305	895	2.6	893	86	3	3196	25	23	24	26	2.00
16097310--16099371	897	2.3	895	88	3	2958	25	23	25	25	2.00
16099737--16099787	26	2.0	26	96	0	93	25	19	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16100735--16100787	26	2.0	26	96	0	97	28	24	20	26	1.99
16101628--16101680	26	2.0	26	96	0	97	28	26	18	26	1.98
16100710--16110044	893	10.6	890	84	6	11290	25	24	24	25	2.00
16105169--16105219	26	2.0	26	96	0	93	29	25	15	29	1.96
16102404--16110044	895	8.6	899	85	4	9672	25	24	24	25	2.00
16106066--16106118	26	2.0	26	96	0	97	26	24	20	28	1.99
16107834--16107886	26	2.0	26	85	0	70	28	22	18	30	1.98
16108706--16108758	26	2.0	26	88	0	79	28	26	18	26	1.98
16109585--16109637	26	2.0	26	92	7	90	30	26	16	26	1.97
16110083--16110135	26	2.0	26	88	0	79	28	24	16	30	1.97
16111280--16111332	26	2.0	26	96	0	97	28	26	18	26	1.98
16111467--16111517	26	2.0	26	92	0	84	29	21	19	29	1.98
16111191--16111539	185	1.9	185	88	1	529	21	27	26	24	1.99
16110928--16112165	487	2.5	486	87	2	1703	19	27	30	22	1.98
16111767--16111819	26	2.0	26	96	0	97	28	26	18	26	1.98
16111952--16112004	26	2.0	26	92	0	88	30	26	16	26	1.97
16114398--16114450	26	2.0	26	96	0	97	26	28	20	24	1.99
16115080--16115104	11	2.3	11	100	0	50	28	20	24	28	1.99
16117018--16117070	26	2.0	26	100	0	106	30	26	16	26	1.97
16115223--16126459	901	12.4	900	80	8	11239	25	24	24	25	2.00
16117912--16117964	26	2.0	26	92	0	88	28	24	18	28	1.98
16118802--16118854	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16121616--16121666	26	2.0	26	100	0	102	27	27	15	29	1.96
16122514--16122566	26	2.0	26	96	0	97	28	24	20	26	1.99
16123412--16123464	26	2.0	26	96	0	97	24	24	22	28	2.00
16120560--16126455	904	6.6	901	85	3	7197	25	24	24	25	2.00
16124316--16124369	26	2.1	26	89	0	81	27	22	20	29	1.98
16125206--16125256	26	2.0	26	92	0	84	27	23	19	29	1.98
16128497--16128547	26	2.0	26	96	0	93	27	27	17	27	1.98
16127628--16131320	908	4.1	905	90	2	5123	25	24	24	25	2.00
16130307--16130362	26	2.2	26	93	0	94	32	25	16	26	1.96
16131752--16131806	25	2.2	26	93	3	94	29	21	20	29	1.98
16132573--16132625	26	2.0	26	92	0	88	28	22	20	28	1.99
16132934--16134612	874	1.9	873	86	2	2366	25	24	24	25	2.00
16135350--16135402	26	2.0	26	92	0	88	24	18	26	30	1.98
16136250--16136302	26	2.0	26	92	0	88	28	18	24	28	1.98
16137128--16137180	26	2.0	26	96	0	97	28	20	24	26	1.99
16139780--16139832	26	2.0	26	88	0	79	26	20	26	26	1.99
16140012--16140037	4	6.5	4	100	0	52	0	26	73	0	0.84
16134625--16142326	875	8.7	878	84	5	9025	25	23	24	26	2.00
16144789--16144841	26	2.0	26	92	0	88	26	16	26	30	1.97
16145688--16145740	26	2.0	26	85	0	70	32	18	20	28	1.97
16147207--16147263	28	2.0	28	96	0	105	22	15	28	33	1.95
16148383--16148461	26	3.0	26	94	0	131	27	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16149287--16149338	25	2.0	26	96	3	97	26	21	25	26	1.99
16150148--16150200	26	2.0	26	96	0	97	28	24	24	22	2.00
16151050--16151102	26	2.0	26	92	0	88	26	20	22	30	1.98
16152794--16152845	26	2.0	26	88	0	77	28	15	25	30	1.96
16153685--16153737	26	2.0	26	88	0	79	24	16	26	32	1.97
16154565--16154615	26	2.0	26	92	0	84	27	17	25	29	1.98
16149917--16161418	890	13.1	896	84	5	13812	25	23	24	25	2.00
16156361--16156411	26	2.0	26	88	3	77	29	19	25	25	1.99
16158957--16159009	26	2.0	26	96	0	97	26	18	26	28	1.98
16160704--16160756	26	2.0	26	100	0	106	26	13	26	33	1.93
16158086--16161418	878	3.8	878	85	6	4384	25	23	25	26	2.00
16162323--16162372	26	1.9	26	95	0	91	28	20	26	26	1.99
16163224--16163272	26	1.9	25	91	4	80	30	16	24	28	1.96
16161743--16164556	902	3.1	899	87	3	3953	25	24	24	26	2.00
16164965--16165229	146	1.8	146	81	3	336	24	25	30	18	1.98
16164551--16167628	869	3.5	856	81	8	3724	25	24	24	25	2.00
16166699--16166751	26	2.0	26	88	0	79	24	16	28	30	1.97
16167603--16167654	25	2.0	26	92	3	88	28	21	25	25	1.99
16168103--16168155	26	2.0	26	92	0	88	30	24	20	24	1.99
16169631--16169683	26	2.0	26	96	0	97	24	26	20	28	1.99
16168929--16171463	887	2.8	881	88	3	3628	25	25	24	25	2.00
16172241--16172293	26	2.0	26	92	0	88	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16173963--16174015	26	2.0	26	92	0	88	28	24	20	26	1.99
16175668--16175717	26	1.9	26	100	0	100	24	26	22	28	1.99
16174907--16177006	906	2.3	903	89	2	3164	25	25	23	25	2.00
16176571--16176623	26	2.0	26	89	7	81	35	24	13	26	1.92
16178673--16178723	26	2.0	26	84	0	66	27	27	15	29	1.96
16181312--16181364	26	2.0	26	100	0	106	26	26	20	26	1.99
16182198--16182248	26	2.0	26	100	0	102	27	23	19	29	1.98
16183093--16183145	26	2.0	26	92	0	88	26	22	22	28	1.99
16183119--16184593	716	2.1	719	90	1	2325	26	23	23	26	2.00
16184713--16184764	26	2.0	26	96	0	95	26	25	19	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190