genome.fa.s223.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  128  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20387820--20387871	24	2.1	25	82	3	61	19	1	3	75	1.06
20387813--20387874	31	2.0	31	81	6	72	19	3	3	74	1.10
20387827--20387871	23	2.0	23	82	8	56	20	0	4	75	0.97
20396872--20396897	8	3.2	8	100	0	52	11	0	0	88	0.52
20409907--20409975	19	3.6	19	78	5	68	47	23	11	17	1.80
20409907--20409989	20	4.3	18	73	14	60	45	22	13	18	1.84
20413476--20413516	8	4.9	8	85	8	55	51	9	24	14	1.72
20416381--20416418	15	2.5	15	91	8	60	86	0	7	5	0.69
20416577--20416605	15	2.0	15	93	6	51	48	6	13	31	1.69
20418083--20418159	34	2.2	35	84	6	95	37	15	15	31	1.89
20418417--20418497	32	2.5	31	88	5	117	40	19	12	27	1.87
20418417--20418693	33	8.5	33	73	16	111	37	18	14	28	1.91
20418552--20418709	33	4.8	33	75	12	121	37	15	16	30	1.90
20418775--20419101	35	9.4	35	75	3	187	14	14	19	51	1.76
20418806--20419077	138	2.0	138	80	1	312	13	16	18	51	1.77
20418798--20419031	103	2.3	103	79	7	249	13	14	19	53	1.73
20418873--20419104	70	3.3	69	77	7	238	14	15	18	50	1.78
20419083--20419349	35	7.6	35	73	5	155	13	13	21	51	1.75
20419083--20419368	70	4.1	70	74	4	218	13	13	21	51	1.75
20419341--20419421	35	2.3	35	100	0	162	18	18	20	41	1.90
20419471--20419536	6	11.0	6	81	13	66	83	13	0	3	0.76
20419485--20419536	7	7.6	7	87	12	65	84	15	0	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20419493--20419536	13	3.5	13	85	14	65	86	13	0	0	0.57
20419474--20419536	26	2.4	26	84	7	83	84	12	0	3	0.75
20421772--20421848	27	2.9	27	73	17	72	66	0	6	27	1.16
20422083--20422165	33	2.5	33	96	0	148	37	27	22	12	1.90
20422173--20422233	19	3.2	19	81	9	61	40	26	14	18	1.89
20423583--20423674	17	5.1	17	65	20	53	71	3	7	17	1.23
20423568--20423688	38	3.4	36	73	17	99	71	2	9	17	1.24
20424013--20424085	20	3.5	20	77	3	74	46	23	5	24	1.73
20424010--20424087	42	1.9	40	92	5	129	43	28	5	23	1.75
20424077--20424164	15	5.9	15	80	5	79	47	26	4	21	1.70
20424083--20424169	45	1.9	45	88	0	129	50	24	4	20	1.67
20424666--20424779	60	1.9	60	87	3	167	40	12	23	23	1.88
20435682--20435716	17	2.1	17	94	0	61	25	11	11	51	1.71
20446732--20446780	19	2.6	18	81	12	53	51	22	4	22	1.65
20447136--20447173	3	12.7	3	83	10	51	71	0	2	26	1.00
20447274--20447321	24	2.0	25	83	4	62	33	4	12	50	1.59
20447522--20447553	15	2.1	15	94	0	55	25	12	12	50	1.75
20452205--20452365	83	1.9	83	97	0	304	22	15	24	37	1.93
20459665--20459713	19	2.6	18	81	12	53	51	22	4	22	1.65
20460069--20460106	3	12.7	3	83	10	51	71	0	2	26	1.00
20460207--20460254	24	2.0	25	83	4	62	33	4	12	50	1.59
20460455--20460486	15	2.1	15	94	0	55	25	12	12	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20468653--20469098	84	5.3	83	75	3	428	32	15	15	36	1.90
20468633--20469098	167	2.8	167	92	2	740	31	15	15	36	1.89
20469003--20469063	22	2.7	22	68	12	52	32	14	21	31	1.93
20470749--20470878	64	2.0	64	91	1	208	47	12	8	31	1.71
20484065--20484098	9	3.9	9	96	3	61	47	0	20	32	1.51
20484068--20484099	13	2.4	14	90	10	50	43	0	21	34	1.53
20485620--20485801	88	2.1	87	88	4	267	31	4	18	44	1.71
20494116--20494154	20	1.9	21	84	5	53	53	7	10	28	1.62
20496532--20496568	11	3.5	11	89	10	51	8	16	8	67	1.40
20497765--20497809	20	2.2	20	88	4	63	37	4	0	57	1.19
20497787--20497857	30	2.3	30	85	2	88	49	4	2	43	1.36
20502275--20502322	12	3.9	12	77	2	51	41	0	0	58	0.98
20503216--20503280	30	2.1	31	91	2	105	60	0	1	38	1.07
20503240--20503279	19	2.0	21	85	9	57	62	0	0	37	0.95
20503704--20503760	17	3.1	19	73	17	57	49	1	1	47	1.22
20506308--20506359	20	2.6	21	93	6	90	48	0	0	51	1.00
20506344--20506395	14	3.9	14	76	21	58	59	0	0	40	0.97
20506349--20506395	8	6.0	8	83	11	62	61	0	0	38	0.96
20517238--20517269	14	2.3	14	94	0	55	84	0	0	15	0.63
20517954--20518005	20	2.5	21	81	6	61	63	9	3	23	1.41
20517963--20518017	20	2.8	20	86	5	67	60	7	7	25	1.49
20518385--20518428	19	2.2	20	80	4	54	52	15	15	15	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20520049--20520078	12	2.5	12	100	0	60	40	16	23	20	1.91
20524357--20524386	15	2.0	15	93	0	51	76	6	3	13	1.11
20525201--20525242	18	2.3	18	88	12	59	54	11	7	26	1.62
20526092--20526154	24	2.5	25	87	5	83	38	3	3	55	1.32
20526285--20526324	21	1.9	21	85	10	55	40	0	5	55	1.22
20526883--20526928	22	2.0	24	83	8	60	58	0	6	34	1.24
20526943--20527009	24	2.8	23	82	11	73	56	2	4	35	1.35
20531762--20531832	22	3.1	23	77	6	72	46	2	4	46	1.37
20532478--20532528	19	2.7	19	75	6	50	54	0	5	39	1.24
20536203--20536249	14	3.3	14	76	11	51	68	4	0	27	1.08
20536658--20536703	23	2.0	23	82	0	56	32	4	0	63	1.14
20536815--20536847	17	1.9	17	93	0	57	60	0	0	39	0.97
20536690--20537463	189	4.1	184	76	10	610	53	5	4	37	1.43
20537043--20537568	94	5.6	95	74	11	331	51	5	3	38	1.44
20539034--20539080	24	2.0	25	83	8	62	59	4	6	29	1.41
20540287--20540383	21	4.6	21	92	3	151	16	25	25	31	1.96
20540763--20540800	18	2.1	18	95	0	67	36	23	2	36	1.69
20540912--20540945	15	2.3	15	89	0	50	47	35	11	5	1.65
20551251--20551312	8	7.5	8	75	13	54	8	8	3	80	1.00
20552585--20552614	15	2.0	15	93	0	51	83	0	0	16	0.65
20552633--20552688	25	2.2	26	81	15	64	42	7	10	39	1.67
20553161--20553258	49	2.1	46	88	5	142	53	8	13	25	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20556399--20556504	54	2.0	53	96	1	194	30	3	27	38	1.74
20564236--20564300	17	4.1	16	84	11	80	73	1	16	7	1.13
20564256--20564300	9	5.2	9	76	17	51	71	2	15	11	1.24
20565019--20565089	33	2.2	33	84	0	88	26	12	19	40	1.88
20565316--20565466	43	3.5	43	90	3	250	21	9	20	48	1.78
20567740--20567766	13	2.1	13	100	0	54	29	22	14	33	1.94
20568777--20568867	48	1.9	47	84	10	123	51	5	13	29	1.63
20575796--20575826	12	2.6	12	94	0	53	67	6	0	25	1.14
20581892--20581921	15	2.0	15	100	0	60	46	6	20	26	1.75
20583922--20583971	25	2.0	25	84	7	66	64	4	8	24	1.38
20585542--20585742	106	1.9	107	88	3	307	21	12	16	48	1.79
20590181--20590230	19	2.5	21	75	24	54	50	6	0	44	1.26
20590793--20590837	18	2.7	18	76	13	51	46	2	0	51	1.13
20592988--20593029	21	2.0	22	85	4	59	54	7	7	30	1.54
20595835--20595881	16	2.9	16	81	15	60	36	8	10	44	1.70
20599777--20599826	20	2.5	21	78	18	61	46	20	10	24	1.81
20599030--20601575	641	4.0	641	88	1	3643	43	18	9	29	1.81
20606305--20606858	300	1.8	302	83	3	740	39	12	12	35	1.81
20606902--20607269	64	5.8	64	77	6	329	35	14	14	34	1.88
20606907--20607269	127	2.8	127	76	5	383	35	15	14	34	1.88
20608339--20608387	24	2.0	24	84	7	64	57	0	2	40	1.10
20613381--20613441	18	3.4	18	86	4	79	34	6	26	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20613396--20613444	18	2.7	18	93	6	82	36	6	26	30	1.81
20613397--20613458	18	3.4	18	86	8	56	40	8	20	30	1.82
20619742--20619785	15	2.9	15	80	10	54	77	0	4	18	0.94
20619751--20619807	15	4.1	14	82	14	66	70	0	8	21	1.14
20620661--20620866	111	1.9	110	92	3	351	25	10	16	47	1.79
20623391--20623415	12	2.1	12	100	0	50	40	0	16	44	1.47
20660360--20660401	15	2.8	16	82	10	52	42	0	0	57	0.99
20667047--20667089	22	2.0	22	85	0	59	34	44	2	18	1.63
20667556--20667586	15	2.1	15	100	0	62	19	29	12	38	1.89
20667890--20668092	58	3.4	58	80	6	192	43	5	10	39	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190