genome.fa.s223.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  60  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9919347--9919375	14	2.0	15	93	6	51	55	20	17	6	1.65
9919971--9920044	7	12.2	6	81	16	57	18	4	2	74	1.10
9919966--9920044	31	2.7	29	83	13	90	17	3	3	74	1.12
9919960--9920044	24	3.6	24	80	12	88	16	4	3	75	1.11
9919981--9920044	23	2.8	22	83	9	83	20	3	3	73	1.11
9920231--9920324	33	2.8	33	85	1	125	30	7	12	48	1.69
9920222--9920335	33	3.5	31	80	8	120	30	7	12	49	1.69
9920900--9920962	20	3.0	20	67	28	51	22	1	9	66	1.29
9924535--9924629	9	10.4	9	75	6	66	26	22	9	42	1.84
9924535--9924628	27	3.4	27	77	1	80	26	22	8	42	1.82
9924642--9924679	20	1.9	20	88	0	58	44	0	10	44	1.38
9925221--9925301	6	13.3	6	73	7	65	24	1	7	66	1.24
9925222--9925301	18	4.4	18	80	13	76	23	1	7	67	1.23
9925241--9925293	24	2.2	24	89	0	79	24	1	5	67	1.22
9925246--9925303	30	1.9	30	89	0	89	24	3	6	65	1.33
9926256--9926323	19	3.8	18	81	9	68	11	2	5	79	1.02
9926267--9926334	24	2.8	24	79	12	68	13	4	5	76	1.12
9926579--9926648	20	3.8	20	69	23	71	28	7	11	52	1.63
9926559--9926642	34	2.5	34	94	0	141	32	4	10	52	1.57
9930568--9930607	17	2.4	17	87	8	55	25	0	12	62	1.30
9931069--9931131	26	2.4	26	84	10	76	50	23	3	22	1.63
9931067--9931131	14	5.1	12	72	18	51	50	23	3	23	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9931093--9931174	13	6.6	12	70	19	53	46	25	4	23	1.72
9931388--9931481	47	2.0	47	87	0	134	36	13	20	29	1.91
9935086--9935166	3	26.0	3	92	2	117	66	1	1	30	1.07
9942431--9942492	22	2.9	21	73	2	61	79	1	9	9	1.02
9942432--9942497	35	1.9	35	84	9	91	75	1	12	10	1.11
9944363--9944396	3	11.7	3	93	6	61	70	0	0	29	0.87
9945134--9945176	21	2.0	22	81	4	52	67	4	27	0	1.10
9946200--9946239	17	2.4	17	87	8	55	25	0	12	62	1.30
9948146--9948176	8	3.9	8	100	0	62	51	12	9	25	1.70
9949670--9949712	16	2.7	16	82	7	52	20	23	11	44	1.84
9960081--9960402	163	2.0	156	85	5	421	51	18	8	21	1.72
9970430--9970500	35	2.0	35	91	0	115	49	9	2	38	1.51
9970976--9971031	29	1.9	29	85	7	78	50	5	10	33	1.60
9978995--9979047	22	2.4	22	84	9	63	11	0	11	77	1.00
9979343--9979443	43	2.4	42	85	8	132	37	11	13	36	1.82
9980123--9980162	10	3.9	10	86	3	53	2	15	0	82	0.77
9982183--9982318	6	21.7	6	69	15	53	5	16	2	75	1.11
9982183--9982278	14	6.9	14	64	15	56	4	18	2	75	1.07
9982232--9982327	25	3.9	24	72	20	74	5	16	2	76	1.07
9983461--9983487	14	1.9	14	100	0	54	3	14	0	81	0.82
9986095--9986144	26	2.0	26	84	11	68	2	20	2	76	0.99
9986268--9986511	122	2.0	122	93	0	416	50	11	13	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9990869--9990923	24	2.3	24	87	0	74	16	16	7	60	1.57
9998664--9998702	20	2.0	19	85	14	53	41	5	0	53	1.23
10001718--10001756	20	2.0	20	84	0	51	53	7	2	35	1.43
10001846--10001940	40	2.3	41	89	5	138	48	8	5	37	1.56
10002850--10002883	18	1.9	17	88	5	50	44	0	2	52	1.16
10003622--10003657	17	2.1	18	89	5	56	38	0	2	58	1.13
10004025--10004068	2	22.0	2	80	0	52	40	0	6	52	1.28
10007176--10007440	135	2.0	135	94	0	467	30	8	16	44	1.77
10012149--10012199	13	3.9	13	81	0	57	49	9	15	25	1.75
10013476--10013529	16	3.6	15	79	13	58	1	18	0	79	0.82
10013605--10013644	11	3.7	11	83	6	55	0	17	0	82	0.67
10018175--10018207	15	2.3	15	89	5	50	42	0	3	54	1.15
10020212--10020265	13	4.1	14	76	9	51	35	1	1	61	1.18
10029981--10030138	77	2.1	75	86	3	219	44	5	8	41	1.59
10033257--10033298	19	2.2	19	91	8	68	52	4	0	42	1.22
10037956--10037989	13	2.6	13	80	0	50	88	0	8	2	0.62
10043520--10043591	26	2.7	27	77	10	85	34	16	16	31	1.92
10044386--10044640	126	2.0	127	80	5	284	35	16	12	34	1.87
10044521--10044870	149	2.4	148	82	7	408	37	16	12	33	1.86
10044750--10044800	22	2.3	22	93	0	84	35	15	13	35	1.87
10044901--10044940	22	1.9	20	90	10	62	35	17	7	40	1.78
10045105--10045184	8	9.8	8	86	10	117	85	1	1	12	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10045094--10045184	16	5.5	16	83	10	96	83	3	1	12	0.82
10045122--10045184	1	63.0	1	77	0	54	87	0	0	12	0.55
10048471--10048517	23	2.0	24	91	4	78	6	19	0	74	1.03
10050139--10050194	26	2.2	26	83	6	69	35	17	5	41	1.73
10049312--10050352	497	2.1	497	80	5	1136	37	18	7	36	1.78
10051555--10051589	6	5.8	6	89	0	52	82	14	0	2	0.77
10052132--10052229	38	2.6	38	83	0	115	21	40	26	11	1.87
10052303--10052334	8	3.8	9	88	12	50	12	0	9	78	0.97
10052303--10052334	17	1.9	16	93	6	55	12	0	9	78	0.97
10052722--10052812	32	2.8	32	80	6	103	48	31	2	17	1.59
10052722--10052812	33	2.8	32	81	8	103	48	31	2	17	1.59
10052727--10052817	16	5.7	15	70	10	56	43	32	3	19	1.67
10055864--10056537	48	13.8	48	83	7	691	27	12	25	33	1.92
10055897--10056537	195	3.3	197	88	6	914	27	12	25	34	1.92
10055867--10056537	146	4.6	147	84	7	751	27	12	25	34	1.92
10057617--10057706	16	5.6	16	71	15	69	47	28	3	20	1.65
10057607--10057716	32	3.4	32	75	9	107	48	28	3	20	1.66
10057616--10057706	33	2.8	32	80	8	94	48	28	3	19	1.65
10060177--10060351	6	26.4	7	77	11	81	20	0	33	45	1.56
10060177--10060348	26	6.5	26	74	14	108	20	0	33	44	1.56
10060194--10060331	6	21.3	6	81	10	114	21	0	34	44	1.57
10060194--10060335	14	10.9	13	76	8	121	20	0	33	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10061773--10061935	78	2.1	79	83	3	204	38	14	13	33	1.86
10062955--10063228	40	6.9	39	80	4	271	35	11	16	36	1.86
10062952--10063228	79	3.5	78	81	3	331	35	11	16	36	1.86
10062955--10063228	119	2.3	119	81	0	332	35	11	16	36	1.86
10063545--10063599	26	2.1	26	86	0	74	29	18	14	38	1.90
10064846--10064915	9	7.4	9	74	19	54	4	21	1	72	1.09
10064835--10064895	20	3.1	19	73	21	54	3	19	1	75	1.03
10064891--10064962	38	1.9	37	86	10	103	8	23	0	68	1.17
10067854--10067915	23	2.9	20	76	23	56	77	1	4	16	1.02
10068780--10068805	9	2.9	9	100	0	52	69	30	0	0	0.89
10069060--10069190	60	2.2	59	86	4	174	48	13	15	22	1.80
10073694--10073765	33	2.2	33	97	0	135	41	11	9	37	1.74
10079918--10079949	4	8.0	4	92	0	55	78	0	21	0	0.76
10080918--10080982	27	2.4	26	80	14	78	76	4	6	12	1.12
10081681--10081705	3	8.3	3	100	0	50	32	0	32	36	1.58
10081704--10081814	3	37.0	3	92	0	150	61	4	2	31	1.30
10085085--10085157	37	2.0	37	83	0	92	28	13	24	32	1.94
10085160--10085289	38	3.4	38	80	5	138	30	10	22	37	1.87
10087303--10087433	27	5.0	27	74	17	96	22	0	30	46	1.57
10087308--10087433	7	19.2	6	70	18	74	22	0	31	45	1.58
10087322--10087427	20	5.4	19	76	11	88	23	0	30	46	1.53
10087330--10087433	13	7.8	13	73	16	79	24	0	29	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10088399--10088457	22	2.7	22	94	0	100	54	3	18	23	1.59
10088399--10088457	11	5.4	11	76	15	68	54	3	18	23	1.59
10088400--10088466	22	3.0	21	79	16	73	53	4	17	23	1.62
10091448--10091481	17	2.0	17	88	0	50	17	17	8	55	1.66
10095629--10095669	21	2.0	21	85	0	55	29	29	12	29	1.93
10100960--10101045	45	2.0	43	81	9	102	18	0	23	58	1.40
10103618--10103647	4	7.2	4	92	7	51	23	0	0	76	0.78
10104683--10104724	22	2.0	21	85	4	57	38	7	21	33	1.81
10108016--10108052	17	2.2	17	95	0	65	24	18	8	48	1.75
10110570--10110625	29	2.0	29	92	3	96	28	12	7	51	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190