genome.fa.s223.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  178  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29881743--29881775	12	2.5	13	90	9	50	39	6	36	18	1.75
29883796--29883859	33	2.0	32	84	3	83	45	1	1	51	1.20
29888939--29888979	3	13.7	3	100	0	82	65	0	0	34	0.93
29897826--29897943	59	2.0	59	94	0	209	38	20	21	20	1.94
29909870--29909959	34	2.6	34	82	6	110	47	11	3	37	1.56
29915038--29915092	23	2.4	23	87	3	76	38	1	12	47	1.52
29915136--29915192	16	3.7	15	70	11	53	45	0	0	54	0.99
29915161--29915212	22	2.5	21	90	6	79	48	0	0	51	1.00
29919311--29919360	26	1.9	26	100	0	100	48	12	22	18	1.80
29923703--29923727	4	6.2	4	100	0	50	72	0	0	28	0.86
29928688--29928747	27	2.2	27	85	5	77	60	0	1	38	1.07
29928681--29928877	43	4.5	43	69	18	104	59	1	1	38	1.14
29928738--29928798	19	3.2	19	74	19	56	62	3	0	34	1.12
29928738--29928798	9	6.4	9	78	12	52	62	3	0	34	1.12
29928780--29928889	45	2.5	44	81	11	109	64	2	0	31	1.14
29931934--29931996	29	2.1	30	97	2	119	39	3	0	57	1.15
29931934--29932009	29	2.7	29	89	6	93	38	3	1	56	1.26
29932029--29932155	53	2.5	51	81	11	145	51	0	3	44	1.22
29932029--29932146	24	4.6	24	70	15	67	52	0	3	43	1.23
29932019--29932153	23	5.5	23	68	19	76	52	0	2	43	1.21
29932019--29932116	24	4.0	23	71	17	79	53	1	2	43	1.19
29932384--29932427	19	2.4	19	84	3	54	29	0	2	68	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29938047--29938083	2	19.0	2	94	5	67	0	51	0	48	1.00
29938917--29938955	2	19.5	2	89	0	60	43	0	5	51	1.24
29938919--29938955	16	2.3	16	100	0	74	43	0	5	51	1.24
29939186--29939226	21	2.0	21	85	0	55	46	2	0	51	1.14
29940599--29940642	20	2.2	20	95	0	79	22	25	22	29	1.99
29940599--29940652	20	2.7	20	88	5	65	20	25	24	29	1.99
29952537--29952578	19	2.2	19	91	8	68	66	0	0	33	0.92
29957649--29957683	6	5.8	6	93	0	61	48	2	17	31	1.61
29966966--29967004	21	1.9	20	84	5	51	43	5	0	51	1.24
29970889--29970958	23	3.0	23	100	0	140	57	4	25	12	1.54
29981024--29981069	23	1.9	23	86	8	65	43	2	0	54	1.12
29981372--29981427	21	2.7	21	78	10	69	62	0	3	33	1.12
29982442--29982470	15	1.9	15	100	0	58	58	20	13	6	1.58
29982641--29982767	62	2.0	62	93	3	220	44	8	3	43	1.53
29987480--29987530	15	3.4	15	83	8	68	0	25	0	74	0.82
29987480--29987530	5	10.2	5	85	8	59	0	25	0	74	0.82
29988179--29988224	18	2.6	18	85	0	65	65	0	0	34	0.93
29992582--29992640	30	2.0	28	84	12	75	47	0	0	52	1.00
29994648--29994674	6	4.5	6	100	0	54	62	18	0	18	1.32
30008741--30008806	32	2.1	32	82	0	78	54	0	0	45	0.99
30009970--30010020	23	2.3	23	86	3	68	35	0	5	58	1.22
30009977--30010022	23	2.0	23	95	0	83	26	0	6	67	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30009977--30010038	23	2.7	23	85	5	63	29	0	4	66	1.12
30012196--30012227	15	2.1	15	94	0	55	0	0	9	90	0.45
30012196--30012227	16	2.1	15	94	5	55	0	0	9	90	0.45
30013988--30014056	27	2.6	27	80	15	72	55	5	0	39	1.24
30014006--30014057	28	1.9	28	88	7	81	55	5	0	38	1.24
30018268--30018306	19	2.1	19	100	0	78	41	15	15	28	1.87
30019369--30019431	31	2.2	31	83	11	80	31	0	4	63	1.15
30023647--30023711	30	2.2	29	86	10	89	60	3	0	36	1.13
30031862--30031899	4	9.5	4	100	0	76	26	0	23	50	1.50
30045460--30045493	17	2.0	16	88	11	50	76	11	2	8	1.12
30046495--30046540	14	3.4	13	79	8	56	34	0	4	60	1.16
30046496--30046553	28	2.1	28	83	6	73	34	0	5	60	1.19
30057057--30059974	333	8.8	333	87	2	3779	35	14	13	37	1.84
30082561--30082697	45	3.1	43	93	3	204	16	5	52	25	1.65
30082575--30082697	45	2.7	45	97	0	228	16	5	52	25	1.65
30082557--30082867	21	14.3	21	75	10	191	16	5	55	22	1.62
30082708--30082849	69	2.1	68	88	4	205	15	5	60	18	1.54
30085606--30085652	18	2.5	19	89	3	78	44	2	0	53	1.12
30092494--30092524	11	2.8	11	90	0	53	67	0	3	29	1.06
30092841--30092866	1	26.0	1	100	0	52	0	0	0	100	0.00
30099548--30099580	2	16.5	2	100	0	66	51	0	0	48	1.00
30104132--30104161	14	2.1	15	93	6	53	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30115125--30115250	62	2.0	61	89	1	189	35	7	5	50	1.55
30115275--30115333	3	20.3	3	75	16	54	71	0	3	25	1.02
30116019--30116163	4	36.2	4	68	15	86	66	0	2	30	1.05
30115989--30116083	24	3.6	24	79	19	100	65	0	4	30	1.12
30116046--30116162	36	3.4	36	80	9	122	67	0	2	29	1.04
30116024--30116154	60	2.2	60	100	0	262	65	0	3	31	1.08
30116094--30116159	24	2.8	24	90	0	105	66	0	3	30	1.06
30115975--30116160	84	2.1	88	83	13	242	66	0	4	29	1.10
30115975--30116144	91	1.9	90	82	11	213	65	0	4	29	1.12
30115989--30116172	24	7.1	24	70	19	86	65	0	3	30	1.10
30116426--30116661	44	5.4	44	80	3	251	45	19	12	22	1.83
30116426--30116693	44	6.1	42	79	8	234	45	19	13	22	1.84
30116426--30116693	87	3.1	87	76	5	283	45	19	13	22	1.84
30116426--30116693	131	2.0	131	86	0	365	45	19	13	22	1.84
30117146--30117184	20	2.0	20	89	0	60	30	20	12	35	1.90
30117210--30117296	25	3.7	24	74	13	90	40	12	6	40	1.70
30117205--30117317	46	2.4	47	85	7	160	38	15	7	38	1.75
30117717--30117760	23	1.9	23	81	9	54	27	25	4	43	1.74
30118513--30118577	19	3.4	18	78	14	67	7	7	0	84	0.77
30118513--30118577	20	3.3	19	80	6	76	7	7	0	84	0.77
30118485--30118558	7	9.9	8	72	21	54	9	13	0	77	1.00
30118477--30118591	28	4.0	29	74	18	82	7	14	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30118525--30118587	19	3.2	20	82	6	76	7	12	0	79	0.93
30118474--30118578	17	6.3	15	67	25	59	7	13	0	79	0.94
30121441--30121470	15	2.0	15	93	0	51	50	6	23	20	1.71
30124159--30124335	88	2.0	90	85	8	247	22	22	20	35	1.96
30124159--30124335	89	2.0	89	87	4	259	22	22	20	35	1.96
30124910--30124942	16	2.0	17	88	5	50	45	0	3	51	1.16
30124815--30125149	115	2.9	113	82	7	415	38	9	5	45	1.62
30124821--30125149	58	5.7	57	84	4	385	38	10	5	45	1.62
30125231--30125271	21	1.9	22	95	5	75	70	2	2	24	1.11
30126309--30126689	44	8.7	44	80	6	346	41	16	15	26	1.88
30126309--30126689	88	4.3	89	80	6	395	41	16	15	26	1.88
30126339--30126686	89	4.0	87	81	5	382	42	16	14	27	1.87
30127682--30127739	21	2.7	21	89	5	80	8	10	0	81	0.89
30134969--30135003	15	2.3	15	85	0	52	48	0	22	28	1.51
30138247--30138577	58	5.8	57	85	5	409	37	11	6	44	1.65
30138277--30138600	173	1.9	173	88	6	496	38	10	5	45	1.61
30138244--30138600	115	3.1	116	81	8	435	37	10	6	45	1.64
30138609--30138642	11	3.2	11	87	8	52	79	0	0	20	0.73
30138673--30138728	4	15.5	4	96	3	70	73	0	0	26	0.84
30139978--30140015	18	2.1	18	85	9	51	86	0	5	7	0.69
30139964--30140008	23	2.0	23	86	0	63	84	2	4	8	0.84
30139978--30140015	12	3.1	13	81	11	53	86	0	5	7	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30140350--30140389	3	12.7	3	86	5	53	65	0	5	30	1.14
30140401--30140426	6	4.3	6	100	0	52	69	0	0	30	0.89
30140353--30140441	20	4.7	20	71	20	50	67	1	5	25	1.19
30140735--30140766	17	1.9	17	93	6	57	0	28	0	71	0.86
30141178--30141310	4	33.8	4	73	8	94	63	0	3	33	1.09
30141184--30141307	31	4.2	31	85	11	163	63	0	2	33	1.07
30141447--30141512	33	2.0	33	100	0	132	36	24	15	24	1.93
30144024--30144151	62	2.1	62	98	0	247	32	6	21	39	1.78
30147639--30147693	22	2.5	20	75	16	56	14	1	9	74	1.14
30148152--30148289	52	2.7	51	72	4	127	54	5	7	32	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190