genome.fa.s223.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  87  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13925787--13933946	901	9.2	898	86	4	10812	25	24	25	25	2.00
13931862--13931914	26	2.0	26	100	0	106	26	20	26	26	1.99
13932744--13932796	26	2.0	26	96	0	97	24	20	26	28	1.99
13933646--13933696	26	2.0	26	92	0	84	31	15	27	25	1.96
13934466--13934518	26	2.0	26	96	0	97	26	18	26	28	1.98
13935376--13935428	26	2.0	26	92	0	88	24	18	26	30	1.98
13933946--13937369	880	3.8	887	87	2	4689	25	24	24	25	2.00
13937343--13937395	26	2.0	26	85	0	70	28	18	24	28	1.98
13937137--13937554	185	2.3	185	85	1	570	23	27	27	22	1.99
13938251--13938303	26	2.0	26	100	0	106	26	20	26	26	1.99
13939144--13939194	26	2.0	26	92	0	84	25	23	23	27	2.00
13937341--13942252	902	5.6	888	78	9	4551	24	23	25	25	2.00
13937341--13939890	892	2.8	898	86	3	3594	25	23	25	25	2.00
13939980--13940032	26	2.0	26	89	7	81	28	16	24	30	1.97
13942377--13942429	26	2.0	26	96	0	97	26	18	26	28	1.98
13945732--13945785	26	2.1	26	85	0	72	24	18	22	35	1.96
13944359--13950677	902	7.1	903	87	2	8230	26	24	23	25	2.00
13946640--13946692	26	2.0	26	92	0	88	28	24	18	28	1.98
13947518--13947568	26	2.0	26	88	0	75	27	27	17	27	1.98
13948420--13948470	26	2.0	26	88	0	75	27	27	17	27	1.98
13949322--13949374	26	2.0	26	96	0	97	28	26	18	26	1.98
13950675--13950738	26	2.5	26	100	0	128	26	28	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13950210--13951152	479	2.0	475	87	2	1354	24	23	24	27	2.00
13951591--13951668	26	3.0	26	90	0	129	32	24	16	26	1.96
13951800--13951852	26	2.0	26	92	0	88	28	24	18	28	1.98
13951617--13952056	184	2.4	184	84	2	571	24	27	24	23	2.00
13951984--13952036	26	2.0	26	92	0	88	28	28	18	24	1.98
13953372--13953424	26	2.0	26	92	0	88	33	26	13	26	1.93
13955467--13955519	26	2.0	26	96	0	97	26	20	20	32	1.98
13956371--13956421	26	2.0	26	96	0	93	25	33	13	27	1.94
13955308--13959838	864	5.1	900	84	5	5775	25	25	24	24	2.00
13958132--13958184	26	2.0	26	88	0	79	26	24	18	30	1.98
13959033--13959085	26	2.0	26	96	0	97	26	24	20	28	1.99
13957127--13959829	898	3.0	900	87	4	3848	25	24	25	25	2.00
13959783--13962654	886	3.2	890	84	4	3708	25	24	24	25	2.00
13965877--13965929	26	2.0	26	100	0	106	26	26	20	26	1.99
13965435--13970870	905	6.1	897	86	4	7188	26	25	23	25	2.00
13968584--13968633	26	1.9	26	100	0	100	26	26	20	28	1.99
13969479--13969531	26	2.0	26	92	0	88	28	24	18	28	1.98
13970362--13970412	26	2.0	26	92	0	84	23	31	19	25	1.98
13972538--13972590	26	2.0	26	96	0	97	28	26	20	24	1.99
13974848--13974900	26	2.0	26	82	7	63	26	26	20	26	1.99
13976610--13976662	26	2.0	26	88	0	79	28	26	18	26	1.98
13977510--13977562	26	2.0	26	89	7	81	32	26	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13975357--13978274	900	3.3	890	85	3	3956	25	25	23	25	2.00
13978249--13978299	25	2.0	25	92	0	84	27	27	21	23	1.99
13977477--13979019	740	2.1	739	88	2	2260	26	23	22	26	2.00
13979152--13979204	26	2.0	26	85	0	70	32	22	16	28	1.96
13979142--13979303	79	2.0	80	90	1	254	26	22	23	27	2.00
13980129--13980181	26	2.0	26	92	0	88	28	24	18	28	1.98
13981026--13981081	26	2.2	26	93	0	94	32	25	16	26	1.96
13979221--13982949	900	4.2	900	84	4	4703	25	25	24	25	2.00
13981907--13981959	26	2.0	26	100	0	106	26	26	20	26	1.99
13982791--13982843	26	2.0	26	96	0	97	28	28	16	26	1.97
13984391--13984443	26	2.0	26	96	0	97	26	24	20	28	1.99
13982958--13986922	888	4.5	891	86	3	5148	26	24	23	25	2.00
13987828--13987880	26	2.0	26	96	0	97	26	28	20	24	1.99
13987854--13989314	711	2.0	711	87	2	2124	27	23	22	26	2.00
13990320--13990371	26	2.0	26	84	0	68	26	26	19	26	1.99
13989440--13994995	901	6.2	887	84	4	6833	25	24	24	25	2.00
13991193--13991245	26	2.0	26	92	0	88	30	24	18	26	1.98
13992997--13993046	26	1.9	26	100	0	100	24	28	20	28	1.99
13995359--13995410	25	2.0	26	88	3	79	28	23	19	28	1.98
13996228--13996285	26	2.2	26	93	3	98	27	24	20	27	1.99
13995548--13998192	902	3.0	883	84	5	3556	25	25	23	25	2.00
13997106--13997158	26	2.0	26	82	7	63	24	22	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13998008--13998060	26	2.0	26	100	0	106	26	26	20	26	1.99
13999946--13999996	26	2.0	26	88	0	75	52	13	11	21	1.72
14000375--14000426	26	2.0	26	96	3	97	26	25	21	26	1.99
14005480--14005537	26	2.2	26	79	11	73	27	24	18	29	1.98
14006381--14006433	26	2.0	26	92	0	88	26	22	20	30	1.98
14007273--14007325	26	2.0	26	92	0	88	26	22	20	30	1.98
14004752--14011830	903	8.0	894	86	4	8794	25	24	24	25	2.00
14009008--14009060	26	2.0	26	96	0	97	26	24	20	28	1.99
14009911--14009963	26	2.0	26	88	0	79	30	24	16	28	1.97
14010812--14010864	26	2.0	26	92	0	88	28	24	20	26	1.99
14011708--14011760	26	2.0	26	92	0	88	26	26	20	26	1.99
14012527--14012579	26	2.0	26	100	0	106	26	26	20	26	1.99
14013401--14013453	26	2.0	26	85	0	70	28	28	18	24	1.98
14014304--14014356	26	2.0	26	96	0	97	28	26	18	26	1.98
14016017--14016069	26	2.0	26	92	0	88	30	26	16	26	1.97
14016924--14016975	26	2.0	25	92	3	86	26	28	17	26	1.97
14019602--14019651	26	1.9	26	100	0	100	24	26	20	30	1.98
14021553--14021602	26	1.9	26	91	0	82	28	26	18	28	1.98
14022446--14022498	26	2.0	26	96	0	97	26	24	20	28	1.99
14023350--14023402	26	2.0	26	100	0	106	26	26	20	26	1.99
14021381--14026226	904	5.4	900	88	3	6648	25	25	24	24	2.00
14024244--14024296	26	2.0	26	92	0	88	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14025147--14025198	26	2.0	26	100	0	104	26	26	19	26	1.99
14015144--14034889	903	21.4	904	70	13	10190	25	25	24	25	2.00
14026356--14026408	26	2.0	26	96	0	97	28	26	18	26	1.98
14025949--14026542	317	1.9	316	85	3	827	20	28	29	22	1.98
14029024--14029076	26	2.0	26	92	0	88	30	24	18	26	1.98
14026223--14034889	902	9.6	902	75	11	6852	25	25	24	25	2.00
14029722--14030073	159	2.2	159	81	4	397	20	28	30	21	1.98
14030047--14030099	26	2.0	26	96	0	97	26	26	22	24	2.00
14031806--14031859	26	2.0	27	92	3	92	29	25	16	27	1.97
14032715--14032767	26	2.0	26	85	0	70	26	22	18	32	1.97
14033615--14033667	26	2.0	26	89	7	81	28	24	16	30	1.97
14034520--14034569	26	1.9	26	91	0	82	32	26	12	30	1.92
14034889--14034939	26	2.0	26	92	7	86	27	21	21	29	1.99
14035780--14035832	26	2.0	26	92	0	88	30	24	18	26	1.98
14036651--14036703	26	2.0	26	96	0	97	28	24	20	26	1.99
14035891--14037934	902	2.3	894	86	3	2826	26	24	23	25	2.00
14039184--14039236	26	2.0	26	92	0	88	30	22	18	28	1.98
14037931--14041288	903	3.7	904	87	1	4662	25	24	24	25	2.00
14042051--14042106	26	2.2	26	93	0	94	28	17	25	28	1.98
14043660--14043712	26	2.0	26	88	0	79	30	22	20	26	1.98
14044558--14044610	26	2.0	26	92	0	88	26	22	22	28	1.99
14042913--14049414	901	7.3	904	84	5	8163	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14045452--14045502	26	2.0	26	88	0	75	33	11	23	31	1.91
14048085--14048135	26	2.0	26	92	0	84	29	19	23	27	1.98
14048869--14048915	25	1.9	25	82	4	60	12	36	34	17	1.87
14048984--14049036	26	2.0	26	96	0	97	26	22	24	26	2.00
14050711--14050763	26	2.0	26	96	0	97	28	20	24	26	1.99
14053374--14053423	26	1.9	26	100	0	100	28	22	28	22	1.99
14054394--14054428	15	2.3	15	95	0	61	11	40	20	28	1.87
14054480--14054532	26	2.0	26	96	0	97	28	26	18	26	1.98
14055376--14055428	26	2.0	26	92	0	88	28	28	18	24	1.98
14054060--14063256	894	10.3	892	83	6	10768	26	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190