genome.fa.s223.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  118  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18512297--18512378	41	2.1	39	88	4	119	58	0	0	41	0.98
18512405--18512461	17	3.5	16	76	19	55	47	0	1	50	1.11
18512362--18512477	16	7.1	16	68	18	62	49	0	0	49	1.13
18513950--18514025	36	2.1	37	80	7	84	60	3	2	32	1.29
18515681--18515941	132	2.0	131	87	0	378	55	8	13	22	1.66
18515908--18516489	234	2.5	234	79	7	582	50	6	10	32	1.63
18517046--18517092	21	2.2	22	88	3	69	21	29	21	27	1.98
18525706--18525764	21	2.8	21	75	10	66	28	28	23	18	1.98
18530271--18531599	236	5.6	238	74	8	830	51	4	11	32	1.59
18530204--18531576	472	2.9	466	78	6	1360	52	4	11	31	1.58
18531424--18531819	214	1.9	214	83	7	518	52	3	11	32	1.54
18530968--18532284	683	1.9	683	78	8	1415	51	5	10	32	1.58
18531617--18532200	232	2.5	232	80	5	651	51	5	9	33	1.59
18533033--18533074	14	3.1	14	80	13	52	66	9	0	23	1.21
18533246--18533335	14	6.5	14	75	12	62	14	3	2	80	0.95
18533256--18533324	25	2.6	25	78	13	68	15	1	2	79	0.92
18533253--18533337	12	7.0	12	75	12	68	15	2	2	80	0.93
18534268--18534306	4	9.8	4	88	0	60	23	5	0	71	1.05
18534336--18534418	30	2.5	34	77	18	95	13	7	2	77	1.08
18534404--18534428	13	1.9	13	100	0	50	12	0	8	80	0.92
18534323--18534418	5	18.2	5	71	18	61	15	6	2	76	1.09
18534577--18534639	31	2.0	31	96	0	117	46	9	6	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18534517--18534694	88	2.0	90	82	5	218	46	8	11	33	1.71
18534608--18534804	60	3.3	61	86	8	262	47	7	11	34	1.67
18539026--18539127	46	2.2	46	84	3	125	44	6	3	45	1.49
18539383--18539427	21	2.1	21	84	8	56	48	2	15	33	1.57
18539533--18539574	19	2.2	20	91	4	68	11	0	38	50	1.40
18539520--18539611	6	14.3	6	72	17	53	17	1	35	45	1.56
18539541--18539676	7	20.4	7	71	12	72	16	2	33	47	1.58
18539566--18539638	33	2.2	33	83	9	87	19	4	32	43	1.70
18541685--18541732	21	2.3	21	92	3	80	20	29	25	25	1.99
18543960--18544003	23	1.9	23	100	0	88	43	4	6	45	1.51
18544629--18544673	22	1.9	23	86	13	65	22	2	6	68	1.24
18545109--18545189	29	2.9	28	84	12	89	53	1	0	45	1.08
18545109--18545288	14	11.9	15	71	18	117	52	1	0	46	1.07
18545110--18545260	31	5.0	31	71	21	108	54	0	0	45	1.04
18545120--18545236	18	5.8	21	74	20	90	57	0	0	41	1.05
18545113--18545222	5	21.8	5	68	17	50	55	0	0	43	1.06
18545266--18545322	17	3.5	16	76	19	55	47	0	1	50	1.11
18545267--18545338	16	4.5	15	75	17	56	50	0	1	48	1.09
18547455--18547489	16	2.2	16	100	0	70	37	0	0	62	0.95
18547552--18547614	31	2.0	32	82	14	78	23	4	3	68	1.24
18548559--18548820	132	2.0	132	87	0	380	55	8	13	22	1.65
18549900--18549941	21	2.0	21	86	4	59	21	30	19	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18550109--18550160	21	2.5	21	93	0	95	25	30	25	19	1.98
18555998--18556174	73	2.4	73	82	4	198	28	21	24	25	1.99
18557808--18557841	15	2.3	15	89	0	50	5	11	35	47	1.65
18557953--18557990	18	2.1	18	95	0	67	36	2	23	36	1.69
18558601--18558659	21	2.8	20	76	14	66	28	30	23	16	1.97
18559513--18559542	13	2.3	13	94	0	51	30	23	10	36	1.87
18562270--18562404	47	2.9	47	75	6	114	34	16	22	27	1.95
18563107--18564473	236	5.8	234	74	8	894	51	5	11	31	1.59
18563109--18564473	472	2.9	467	78	7	1353	51	5	11	31	1.59
18564516--18565099	232	2.5	232	80	5	642	51	5	9	33	1.59
18565919--18565960	14	3.1	14	80	13	52	66	9	0	23	1.21
18566165--18566219	21	2.5	23	80	11	71	16	1	1	80	0.90
18566170--18566216	17	2.8	17	77	9	51	14	2	2	80	0.89
18566165--18566222	14	4.2	13	79	14	53	15	3	1	79	0.95
18566341--18566380	9	4.8	8	87	6	53	20	0	7	72	1.08
18567134--18567172	4	9.8	4	88	0	60	23	5	0	71	1.05
18567155--18567243	32	2.7	32	81	10	92	19	5	5	69	1.29
18567188--18567272	5	16.2	5	71	21	50	14	7	3	75	1.15
18567428--18567490	31	2.0	31	96	0	117	46	9	6	38	1.62
18567369--18567545	88	2.0	90	82	4	216	45	9	11	33	1.71
18567459--18567655	60	3.3	61	86	8	262	47	7	11	34	1.67
18578061--18578123	8	7.9	8	87	0	72	80	0	9	9	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18578062--18578128	16	4.1	16	88	1	98	77	0	11	10	0.99
18578062--18578122	24	2.6	24	89	2	88	80	0	9	9	0.91
18579134--18579432	42	7.1	41	90	3	348	24	17	21	36	1.94
18579615--18579684	6	11.2	6	78	6	59	18	2	1	77	0.97
18579776--18579824	20	2.3	20	79	6	53	22	4	8	65	1.37
18579808--18579840	9	3.8	9	88	4	50	21	3	9	66	1.33
18580456--18580718	130	2.0	130	96	0	481	22	31	22	23	1.98
18580837--18580928	5	17.8	5	70	22	57	14	6	2	77	1.06
18580836--18580923	31	2.7	31	76	16	81	13	7	2	76	1.11
18580943--18582050	60	18.7	58	81	7	1167	42	7	13	35	1.74
18580943--18582050	59	18.7	58	81	8	1171	42	7	13	35	1.74
18580943--18582050	119	9.4	116	83	7	1229	42	7	13	35	1.74
18583531--18583563	2	16.5	2	100	0	66	51	0	0	48	1.00
18587531--18588360	242	3.5	234	82	4	964	31	9	12	46	1.73
18590764--18590803	14	2.9	14	100	0	80	47	0	0	52	1.00
18590806--18590854	16	2.9	16	80	16	55	59	0	4	36	1.17
18592759--18592787	13	2.2	13	100	0	58	31	13	6	48	1.69
18600737--18600775	20	2.0	20	84	0	51	53	30	0	15	1.42
18600744--18600795	7	7.7	7	87	8	54	50	38	0	11	1.39
18600751--18600795	13	3.4	13	84	3	54	51	40	0	8	1.33
18601089--18601138	26	1.9	26	91	0	82	46	38	0	16	1.47
18603238--18603275	20	2.0	18	90	10	58	34	7	10	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18603287--18603348	23	2.8	22	76	13	65	30	3	12	53	1.55
18603300--18603396	24	4.1	24	78	2	106	34	3	9	53	1.48
18603375--18603416	20	2.1	20	86	0	57	30	4	9	54	1.53
18603446--18603497	20	2.4	23	78	15	58	30	5	9	53	1.57
18603413--18603595	55	3.5	55	85	5	220	28	6	9	55	1.56
18603674--18603726	24	2.3	23	80	9	63	33	3	13	49	1.60
18606834--18606880	20	2.3	21	78	10	53	51	6	27	14	1.67
18609787--18609824	21	1.9	20	89	10	60	81	13	5	0	0.85
18610981--18611033	22	2.4	21	78	9	61	24	22	11	41	1.86
18611307--18611520	42	5.1	42	84	3	270	26	12	21	39	1.89
18611307--18611520	84	2.5	85	86	3	299	26	12	21	39	1.89
18612470--18612585	24	5.0	24	74	9	107	32	3	10	53	1.52
18612472--18612782	20	15.6	20	64	27	96	30	3	10	54	1.52
18612470--18612606	44	3.0	45	68	11	109	32	2	9	54	1.47
18612564--18612649	32	2.7	32	98	0	163	31	3	9	55	1.48
18612627--18612773	55	2.8	54	87	9	207	28	4	11	55	1.56
18615568--18615597	12	2.4	12	94	5	51	23	0	3	73	0.98
18615640--18615682	4	11.0	4	80	14	54	74	4	0	20	1.00
18615640--18615692	28	1.9	27	88	11	81	73	7	0	18	1.06
18615640--18615691	20	2.6	21	85	14	74	73	7	0	19	1.07
18619796--18619848	22	2.4	22	90	3	79	30	5	26	37	1.79
18620017--18620075	22	2.6	22	78	7	57	28	3	1	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18620098--18620169	25	2.9	25	75	20	80	75	6	0	18	1.02
18626404--18627174	390	2.0	389	92	0	1272	32	16	12	38	1.86
18630155--18630213	19	3.1	19	80	7	66	76	10	0	13	1.02
18630148--18630215	28	2.4	27	83	11	84	76	8	0	14	1.01
18631247--18631291	23	2.0	23	86	8	65	68	6	6	17	1.33
18637622--18637652	16	1.9	16	93	0	53	61	3	9	25	1.42
18642066--18642100	16	2.2	16	89	0	52	28	8	14	48	1.73
18642487--18642517	2	15.5	2	100	0	62	0	0	48	51	1.00
18644050--18644115	33	2.0	33	88	5	98	24	6	39	30	1.79
18650979--18651713	367	2.0	367	97	0	1389	28	11	13	47	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190