genome.fa.s223.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  161  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26201464--26201504	20	2.0	21	85	4	57	53	2	29	14	1.54
26203532--26203607	36	2.1	36	85	0	98	25	2	9	63	1.37
26203586--26203629	12	3.6	11	85	11	52	18	9	2	70	1.24
26203592--26203627	12	2.8	13	87	8	56	19	11	0	69	1.18
26204547--26204580	15	2.2	16	89	5	52	5	11	0	82	0.83
26204547--26204642	12	7.9	12	73	12	54	11	6	5	77	1.12
26204773--26204830	26	2.1	28	84	9	75	31	6	13	48	1.69
26204904--26204966	16	3.6	17	87	10	83	25	7	15	50	1.71
26205709--26205912	3	69.0	3	77	12	64	36	7	0	54	1.33
26205911--26205941	3	10.3	3	92	0	53	32	35	0	32	1.58
26212477--26212592	55	2.1	55	98	0	223	34	15	13	36	1.87
26217871--26218013	64	2.2	65	82	1	162	23	18	11	46	1.82
26218412--26218467	26	2.1	28	86	6	80	76	5	7	10	1.14
26219325--26219350	3	8.7	3	100	0	52	65	0	0	34	0.93
26219349--26219375	3	9.0	3	100	0	54	33	0	0	66	0.92
26219576--26219663	37	2.3	38	78	3	97	42	15	7	34	1.77
26222286--26222401	46	2.5	47	84	8	130	31	17	7	43	1.77
26222223--26222678	47	9.4	49	75	10	248	28	16	9	45	1.78
26222426--26222677	99	2.6	97	79	6	249	29	16	6	47	1.72
26222351--26222667	50	6.5	49	76	9	220	28	17	7	46	1.75
26222642--26222708	21	3.3	21	72	8	66	23	14	11	49	1.77
26222703--26222737	18	2.0	17	88	5	52	34	17	8	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26222903--26223014	21	5.3	20	70	23	79	31	16	17	34	1.92
26222888--26223028	42	3.3	42	81	7	151	31	16	16	35	1.91
26222970--26223031	21	3.0	20	80	7	70	29	16	16	38	1.90
26223098--26223155	23	2.6	22	81	7	64	29	8	8	53	1.61
26223118--26223235	21	5.4	22	76	6	80	33	10	11	45	1.73
26223082--26223193	44	2.5	44	83	8	122	32	9	10	47	1.71
26223135--26223248	21	5.2	21	72	8	86	34	11	12	42	1.78
26223277--26223378	21	4.6	21	73	15	73	36	5	14	43	1.70
26223277--26223578	44	7.1	44	73	14	215	34	8	13	43	1.74
26223400--26223560	37	4.2	37	71	16	119	33	9	14	42	1.77
26223277--26223514	89	2.8	89	79	11	228	34	8	13	43	1.74
26223365--26223578	81	2.6	82	83	4	283	34	9	12	43	1.76
26223449--26223578	37	3.1	44	73	19	114	35	10	12	41	1.78
26223490--26223563	37	2.0	37	91	0	121	31	8	13	47	1.72
26224127--26224244	25	4.7	26	75	8	84	38	19	17	23	1.93
26224114--26224382	50	5.6	50	71	15	208	37	18	19	24	1.94
26224290--26224359	25	2.8	24	80	6	86	41	20	15	22	1.90
26224277--26224371	25	3.9	23	75	14	75	37	18	17	25	1.93
26224116--26224395	140	2.0	140	97	0	524	38	18	18	24	1.93
26224518--26224576	28	2.1	28	90	0	91	33	20	20	25	1.97
26224518--26224596	28	2.8	28	86	3	88	34	20	20	25	1.96
26224623--26224916	45	6.5	46	78	8	266	29	14	17	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26229622--26229664	12	3.4	13	81	12	54	55	0	0	44	0.99
26229687--26229724	19	2.1	18	90	5	58	68	0	0	31	0.90
26229880--26229916	12	3.2	12	88	3	58	27	0	5	67	1.12
26232314--26232365	19	2.7	19	78	3	59	11	5	21	61	1.50
26234079--26234224	51	2.8	52	88	6	217	41	7	22	28	1.81
26235088--26235244	52	3.0	52	84	3	192	44	7	21	26	1.78
26236107--26236252	52	2.8	52	74	2	159	49	5	16	28	1.68
26236171--26239226	971	3.1	968	84	4	3588	33	8	24	33	1.86
26238112--26238256	52	2.8	52	82	6	170	41	6	23	28	1.78
26239123--26239278	52	3.0	51	83	7	197	44	7	19	27	1.78
26240118--26240273	52	3.0	52	83	8	194	41	8	22	28	1.82
26244059--26244084	3	8.7	3	100	0	52	69	0	0	30	0.89
26256159--26256208	18	2.8	18	72	22	50	50	0	2	48	1.12
26263639--26263692	3	18.0	3	100	0	108	33	0	0	66	0.92
26264622--26264650	15	1.9	15	100	0	58	20	13	17	48	1.81
26264961--26264997	3	12.3	3	100	0	74	35	0	0	64	0.94
26266374--26266408	17	2.1	17	88	0	52	0	17	0	82	0.66
26267427--26267564	8	16.9	8	71	15	86	3	2	17	76	1.02
26267427--26267565	17	8.4	16	66	19	54	3	2	17	76	1.02
26267467--26267525	4	14.5	4	80	16	52	0	1	20	77	0.85
26267471--26267520	27	1.9	27	88	8	77	0	2	20	78	0.86
26267471--26267552	30	2.8	30	77	18	84	2	1	19	76	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26267471--26267563	23	4.0	23	80	18	95	2	1	19	77	0.93
26267760--26267995	49	4.7	48	77	10	197	37	17	13	31	1.88
26267825--26267997	49	3.5	49	82	6	201	38	16	12	32	1.86
26268915--26268985	30	2.3	31	83	7	83	7	11	2	78	1.04
26268912--26268985	14	5.0	14	74	11	67	6	13	2	77	1.08
26275434--26276209	389	2.0	388	92	2	1290	33	17	15	33	1.91
26279938--26279994	3	19.0	3	77	0	51	29	5	5	59	1.41
26281011--26281095	42	2.0	42	90	4	136	35	15	9	40	1.79
26281804--26281945	53	2.5	57	83	6	184	35	12	6	45	1.68
26281913--26281981	36	1.9	36	93	0	120	31	17	7	43	1.76
26281860--26282041	96	2.0	89	82	9	222	34	14	4	46	1.65
26281949--26282216	119	2.3	119	88	1	394	35	13	5	45	1.66
26281949--26282257	59	5.2	59	83	3	363	35	12	5	45	1.66
26282687--26282711	2	12.5	2	100	0	50	0	48	0	52	1.00
26284901--26284939	3	13.3	3	83	5	53	35	2	0	61	1.10
26288771--26288805	17	2.1	17	100	0	70	34	11	25	28	1.91
26289561--26289585	12	2.1	12	100	0	50	68	16	0	16	1.22
26289866--26289895	13	2.3	13	94	0	51	80	0	10	10	0.92
26289976--26290022	17	2.8	17	86	0	58	65	2	0	31	1.04
26289956--26290034	19	4.3	18	76	9	70	59	2	2	35	1.24
26290072--26290150	29	2.7	28	81	11	79	62	2	3	31	1.27
26290138--26290201	33	2.0	32	84	3	83	62	1	4	31	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26290343--26290395	18	2.8	19	80	11	56	28	0	5	66	1.15
26290463--26290510	19	2.5	19	80	10	53	41	0	8	50	1.33
26290534--26290596	9	6.4	9	75	13	54	31	0	7	60	1.26
26290553--26290622	11	6.4	11	75	18	74	25	0	8	65	1.21
26290503--26290588	19	4.3	19	73	15	75	30	2	8	59	1.39
26290534--26290595	19	3.2	19	77	11	63	32	0	8	59	1.26
26290534--26290623	10	8.5	10	72	19	67	31	0	7	61	1.24
26290503--26290621	21	5.7	20	75	13	91	29	1	8	60	1.36
26290833--26290887	27	2.0	28	85	7	76	27	12	10	49	1.74
26292883--26292937	25	2.2	24	83	3	65	40	14	16	29	1.88
26296361--26296390	14	2.1	14	93	6	51	80	0	0	20	0.72
26297306--26297333	12	2.3	12	100	0	56	60	0	0	39	0.97
26297302--26297335	18	1.9	17	88	5	50	58	0	0	41	0.98
26298814--26298856	22	1.9	23	86	13	63	16	18	6	58	1.60
26302529--26302579	25	2.0	25	88	0	75	35	11	23	29	1.90
26307236--26307276	21	2.0	21	95	0	73	75	2	0	21	0.92
26310710--26310765	16	3.7	16	72	20	57	37	0	0	62	0.95
26314535--26314616	42	2.0	42	100	0	164	35	12	14	37	1.84
26315594--26315653	26	2.3	27	80	11	70	26	1	3	68	1.15
26316217--26316275	5	11.4	5	78	12	57	81	15	1	1	0.86
26316337--26316378	21	2.0	21	86	9	59	30	54	7	7	1.54
26317742--26317852	16	6.8	16	72	11	75	48	30	3	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26317743--26317853	32	3.4	32	75	10	100	48	30	3	17	1.64
26318123--26318161	15	2.6	15	83	0	51	30	12	15	41	1.85
26318894--26318941	10	4.7	10	80	14	53	22	0	4	72	1.01
26325914--26325990	41	1.9	41	84	7	104	38	16	12	31	1.87
26325880--26325994	40	2.9	40	77	10	119	36	14	13	35	1.85
26326119--26326280	21	7.5	21	76	11	148	24	22	24	29	1.99
26326119--26326311	43	4.4	42	86	5	226	23	21	25	29	1.99
26326400--26326577	22	8.0	23	77	9	172	23	21	22	32	1.98
26326373--26326556	22	8.4	22	74	14	130	25	22	21	30	1.98
26326373--26326583	44	4.8	44	79	5	210	25	22	21	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190