genome.fa.s223.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  69  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11417408--11417460	26	2.0	26	88	0	79	30	20	20	28	1.98
11417641--11417666	4	6.5	4	100	0	52	0	26	73	0	0.84
11418968--11419020	26	2.0	26	92	0	88	28	20	22	28	1.99
11420517--11420569	26	2.0	26	96	0	97	26	18	26	28	1.98
11420702--11420754	26	2.0	26	100	0	106	26	16	26	30	1.97
11420497--11420837	185	1.8	185	88	2	524	21	26	30	21	1.99
11420992--11421042	26	2.0	26	92	0	84	25	19	25	29	1.99
11421177--11421229	26	2.0	26	96	0	97	26	18	26	28	1.98
11420448--11421609	475	2.4	480	86	3	1527	23	28	27	20	1.99
11422368--11422420	26	2.0	26	96	0	97	26	18	26	28	1.98
11422865--11422917	26	2.0	26	92	0	88	26	18	24	30	1.98
11422451--11426777	872	4.9	882	83	7	4826	25	24	24	25	2.00
11427225--11427277	26	2.0	26	92	0	88	26	20	24	28	1.99
11425942--11429416	844	4.0	842	76	11	2531	25	24	25	24	2.00
11428124--11428176	26	2.0	26	92	0	88	30	20	22	26	1.98
11429020--11429072	26	2.0	26	92	0	88	26	20	26	26	1.99
11426775--11434420	894	8.5	897	88	3	10194	25	24	24	25	2.00
11433012--11433062	26	2.0	26	88	0	75	25	9	9	54	1.63
11433486--11433538	26	2.0	26	82	7	63	28	18	22	30	1.98
11433906--11433956	26	2.0	26	88	0	75	25	9	9	54	1.63
11434439--11434494	26	2.2	26	96	0	103	26	19	23	30	1.98
11434502--11434554	26	2.0	26	92	0	88	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11435395--11435447	26	2.0	26	92	0	88	32	22	16	28	1.96
11436063--11436261	107	1.9	107	82	6	251	17	30	26	26	1.97
11436718--11436768	26	2.0	26	92	0	84	29	25	19	25	1.99
11438437--11438489	26	2.0	26	96	0	97	28	26	18	26	1.98
11439340--11439392	26	2.0	26	96	0	97	26	24	20	28	1.99
11437135--11440671	903	3.9	900	88	2	5106	25	25	24	25	2.00
11440238--11440290	26	2.0	26	92	0	88	26	24	20	28	1.99
11441743--11441795	26	2.0	26	100	0	106	26	26	20	26	1.99
11441195--11445294	898	4.7	865	85	5	5240	25	25	24	24	2.00
11443497--11443547	26	2.0	26	96	0	93	25	25	19	29	1.99
11445268--11445339	26	2.8	26	93	0	126	25	26	20	27	1.99
11446532--11446584	26	2.0	26	92	0	88	26	24	20	28	1.99
11447438--11447512	26	2.9	26	97	0	141	25	26	20	28	1.99
11447828--11447880	26	2.0	26	89	7	81	30	28	16	24	1.97
11448717--11448795	26	3.0	26	90	0	122	27	25	21	25	1.99
11449649--11449699	26	2.0	26	92	0	84	27	23	21	27	1.99
11447722--11453281	874	6.2	894	84	5	6908	25	24	24	25	2.00
11453204--11453254	24	2.0	26	88	7	79	27	23	19	29	1.98
11453520--11453571	26	2.0	26	84	0	68	28	21	17	32	1.96
11454346--11454398	26	2.0	26	88	0	79	32	26	15	26	1.95
11455249--11455301	26	2.0	26	92	0	88	28	24	20	26	1.99
11456788--11456840	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11457681--11457733	26	2.0	26	96	0	97	28	24	20	26	1.99
11455915--11462612	891	7.5	893	85	4	8480	25	24	24	25	2.00
11460343--11460394	26	2.0	26	100	0	104	26	26	19	26	1.99
11461255--11461307	26	2.0	26	92	0	88	28	24	20	26	1.99
11459468--11462612	917	3.5	900	87	3	4415	25	24	23	25	2.00
11462982--11463032	26	2.0	26	92	0	84	23	27	19	29	1.98
11463860--11463912	26	2.0	26	96	0	97	30	24	16	28	1.97
11464718--11464771	26	2.1	26	89	0	81	29	22	18	29	1.97
11463442--11465138	854	2.0	836	85	6	2296	25	24	24	26	2.00
11465258--11465366	50	2.2	50	100	0	218	41	16	21	21	1.90
11466154--11466203	26	1.9	26	95	0	91	26	24	20	30	1.98
11467051--11467103	26	2.0	26	96	0	97	26	28	18	26	1.98
11468845--11468897	26	2.0	26	96	0	97	24	22	20	32	1.98
11471508--11471560	26	2.0	26	88	0	79	26	24	18	30	1.98
11470630--11472438	901	2.0	908	87	1	2641	25	25	23	24	2.00
11473446--11473499	26	2.0	27	96	3	101	27	20	25	25	1.99
11474341--11474393	26	2.0	26	96	0	97	28	20	24	26	1.99
11476786--11476843	26	2.2	27	88	11	86	27	25	20	25	1.99
11477700--11477750	26	2.0	26	92	0	84	27	25	21	25	1.99
11479333--11479382	26	1.9	26	95	0	91	28	26	18	28	1.98
11477966--11479785	890	2.0	889	89	1	2815	25	24	24	25	2.00
11480152--11480202	26	2.0	26	92	0	84	23	27	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11480611--11482316	865	2.0	836	85	5	2305	25	24	24	26	2.00
11482442--11482539	48	2.0	48	96	0	178	38	17	21	22	1.93
11483309--11483361	26	2.0	26	89	7	81	24	22	22	30	1.99
11484210--11484262	26	2.0	26	100	0	106	26	26	20	26	1.99
11486011--11486061	26	2.0	26	92	0	84	21	25	21	31	1.98
11483124--11489748	902	7.4	901	86	3	8381	25	24	24	25	2.00
11483117--11489748	901	7.4	902	86	3	8461	25	24	24	25	2.00
11488671--11488723	26	2.0	26	88	0	79	26	24	18	30	1.98
11490603--11490655	26	2.0	26	100	0	106	26	20	26	26	1.99
11489746--11493630	894	4.3	895	86	2	5259	25	24	24	25	2.00
11491497--11491549	26	2.0	26	96	0	97	28	20	24	26	1.99
11493297--11493349	26	2.0	26	88	0	79	28	16	24	30	1.97
11494350--11494403	26	2.1	26	100	0	108	27	18	25	27	1.98
11494968--11495025	26	2.2	27	93	3	100	25	15	25	32	1.95
11495201--11497139	718	2.7	712	90	1	3004	26	22	23	28	1.99
11498260--11498312	26	2.0	26	96	0	97	28	26	18	26	1.98
11498286--11499767	819	1.8	821	90	1	2402	26	24	23	25	2.00
11499965--11500017	26	2.0	26	96	0	97	28	26	18	26	1.98
11499809--11500294	243	2.0	243	98	0	936	21	29	27	21	1.99
11500208--11500260	26	2.0	26	96	0	97	28	26	18	26	1.98
11501108--11501160	26	2.0	26	96	0	97	26	24	20	28	1.99
11501836--11501888	26	2.0	26	92	0	88	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11503616--11503668	26	2.0	26	96	0	97	32	24	15	28	1.95
11502742--11509747	895	7.8	900	83	4	8129	25	24	24	25	2.00
11502742--11509747	900	7.8	900	83	4	8120	25	24	24	25	2.00
11507167--11507219	26	2.0	26	100	0	106	26	26	20	26	1.99
11508065--11508114	26	1.9	26	91	0	82	28	22	20	30	1.98
11508962--11509013	26	2.0	26	92	3	88	26	23	21	28	1.99
11508803--11509170	182	2.0	185	85	1	499	19	27	30	22	1.98
11510596--11510648	26	2.0	26	92	0	88	30	24	18	26	1.98
11509883--11512257	890	2.7	876	84	4	3046	27	24	22	25	2.00
11512731--11512781	25	2.0	25	96	0	93	27	25	17	29	1.98
11514669--11514740	26	2.8	26	86	0	117	30	18	23	27	1.97
11516363--11516412	26	1.9	26	91	0	82	22	22	28	28	1.99
11517997--11518048	26	2.0	26	88	0	77	32	19	23	25	1.97
11518886--11518938	26	2.0	26	92	0	88	28	18	26	26	1.98
11517285--11521025	905	4.2	895	85	3	4877	25	23	25	25	2.00
11521417--11521468	26	2.0	25	92	3	86	25	19	25	30	1.98
11520284--11521753	728	2.0	731	86	3	2044	25	25	26	22	2.00
11521022--11524100	897	3.5	885	85	7	4073	25	25	24	24	2.00
11525129--11525180	26	2.0	26	96	3	97	25	21	26	26	1.99
11526028--11526080	26	2.0	26	88	0	79	30	18	22	28	1.98
11524211--11527866	897	4.1	893	85	4	4690	25	23	24	25	2.00
11527790--11527842	26	2.0	26	85	0	70	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11529420--11529472	26	2.0	26	92	0	88	26	20	24	28	1.99
11530159--11530211	26	2.0	26	96	0	97	26	18	26	28	1.98
11528724--11530235	735	2.1	734	90	1	2346	27	23	22	26	2.00
11531062--11531114	26	2.0	26	96	0	97	28	20	24	26	1.99
11529446--11538125	903	9.7	901	85	3	10690	25	23	24	25	2.00
11533719--11533771	26	2.0	26	92	0	88	28	22	24	24	2.00
11534605--11534657	26	2.0	26	92	0	88	26	20	26	26	1.99
11536406--11536457	26	2.0	26	96	0	95	28	19	25	26	1.98
11537276--11537328	26	2.0	26	88	0	79	26	20	24	28	1.99
11538924--11538976	26	2.0	26	92	0	88	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190