genome.fa.s223.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  143  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23245920--23245966	24	1.9	24	82	4	58	48	0	0	51	1.00
23245994--23246051	3	19.3	3	100	0	116	32	0	0	67	0.91
23248106--23248153	20	2.3	21	86	10	64	27	6	2	64	1.28
23248198--23248261	7	9.7	6	83	8	56	32	4	1	60	1.26
23248198--23248261	14	4.8	13	77	12	67	32	4	1	60	1.26
23248198--23248261	20	3.2	19	82	6	74	32	4	1	60	1.26
23254492--23254546	28	2.0	28	92	0	92	38	12	12	36	1.82
23254570--23254701	69	1.9	69	93	0	228	31	26	6	35	1.81
23255246--23255492	40	6.2	40	81	1	237	39	10	20	29	1.86
23255243--23255449	79	2.6	80	83	5	251	39	10	19	29	1.86
23256346--23256449	40	2.6	39	80	8	104	39	8	16	35	1.79
23257667--23257717	25	2.0	25	100	0	102	27	25	11	35	1.91
23279491--23279523	17	1.9	17	100	0	66	42	21	6	30	1.77
23279983--23280020	18	2.1	18	100	0	76	36	5	10	47	1.61
23280176--23280209	5	6.4	5	93	3	50	20	0	2	76	0.92
23280241--23280265	13	1.9	13	100	0	50	24	8	8	60	1.52
23280868--23280926	20	2.8	20	78	12	57	76	3	3	16	1.06
23280988--23281034	21	2.3	21	85	10	62	19	6	25	48	1.72
23281518--23281555	17	2.1	19	85	9	53	0	2	15	81	0.80
23282532--23282842	46	6.7	46	77	2	266	38	17	12	31	1.87
23282586--23282845	138	1.9	138	84	4	355	39	16	12	31	1.86
23285022--23285223	108	1.9	108	97	0	386	26	19	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23291378--23291418	14	2.8	15	79	13	50	26	4	0	68	1.10
23291391--23291443	23	2.3	24	78	15	58	24	1	1	71	1.06
23292482--23292516	18	1.9	18	94	0	61	71	5	2	20	1.19
23298243--23298415	87	2.0	87	94	0	301	34	13	10	41	1.79
23299999--23300118	62	1.9	62	81	6	145	30	13	13	42	1.82
23300040--23300267	126	1.8	125	83	8	302	32	13	13	41	1.82
23300100--23300300	62	3.2	63	70	17	159	34	12	13	38	1.84
23305163--23305566	143	2.8	143	82	4	438	41	12	13	32	1.83
23307022--23307055	18	1.9	17	88	5	50	44	2	0	52	1.16
23307014--23307075	31	2.1	31	84	6	83	46	1	0	51	1.10
23308614--23308670	25	2.3	25	96	0	105	35	33	12	19	1.89
23309450--23309476	3	9.0	3	100	0	54	33	0	0	66	0.92
23316162--23316205	16	2.7	16	89	3	70	86	2	6	4	0.77
23316155--23316204	22	2.3	22	82	6	57	82	4	8	6	0.96
23319527--23319564	19	2.0	20	89	5	60	36	18	13	31	1.89
23319906--23319937	12	2.6	13	85	14	50	28	0	0	71	0.86
23319910--23319948	16	2.4	17	86	4	53	30	0	0	69	0.89
23319906--23319947	20	2.1	20	86	0	57	30	0	0	69	0.89
23320058--23320768	60	11.9	57	80	8	586	48	6	10	34	1.63
23320064--23320768	117	5.9	118	81	5	636	48	6	10	33	1.64
23320663--23320874	106	2.0	105	90	2	338	48	5	10	34	1.62
23320719--23320813	46	2.1	44	90	3	145	50	5	10	33	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23320764--23320912	60	2.5	60	85	7	196	45	4	14	35	1.65
23320602--23320912	163	1.9	166	84	5	418	46	5	11	36	1.63
23332476--23333352	85	10.3	84	77	8	641	20	16	16	47	1.82
23332387--23333269	171	5.2	170	78	7	655	20	16	15	47	1.83
23332513--23333424	341	2.7	340	79	4	901	19	16	16	47	1.83
23332389--23333426	255	4.1	250	76	7	822	19	16	16	47	1.83
23334617--23334903	63	4.8	59	79	8	296	46	5	10	37	1.61
23334698--23334903	60	3.5	56	78	10	200	46	5	12	35	1.65
23334623--23334904	119	2.4	118	85	6	347	46	5	10	36	1.63
23334616--23334926	60	5.2	59	77	9	188	47	5	10	36	1.61
23334931--23335171	59	4.1	59	87	3	299	44	6	14	34	1.71
23335139--23335190	27	1.9	27	88	0	77	46	7	15	30	1.74
23335084--23335251	85	1.9	87	86	5	243	48	7	11	33	1.66
23335210--23335443	103	2.2	106	84	3	294	50	7	9	32	1.63
23335329--23335478	61	2.5	61	80	8	189	47	6	12	34	1.67
23343623--23343662	12	3.3	12	83	13	55	25	12	17	45	1.83
23354633--23354709	38	2.0	39	82	7	95	27	14	14	44	1.83
23354577--23354759	87	2.1	86	81	5	217	30	14	13	42	1.83
23354776--23354933	46	3.3	46	79	8	165	27	12	13	46	1.79
23354776--23354933	48	3.3	47	77	10	160	27	12	13	46	1.79
23355254--23355314	20	3.0	20	80	4	70	44	11	14	29	1.81
23355274--23355304	10	3.1	10	90	0	53	32	16	19	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23357402--23357444	14	3.0	14	89	3	59	48	11	6	32	1.66
23357432--23357469	19	2.1	18	90	9	60	52	5	5	36	1.47
23357490--23357534	3	15.0	3	90	0	72	62	2	0	35	1.08
23357483--23357600	6	19.5	6	91	0	74	50	15	0	34	1.44
23357527--23357585	3	19.7	3	92	0	100	35	28	0	35	1.58
23358507--23358553	14	3.3	14	81	3	58	53	14	2	29	1.53
23358509--23358553	15	3.1	15	80	6	56	53	13	2	31	1.52
23358507--23358559	14	3.6	14	76	16	54	52	13	1	32	1.51
23359445--23359480	14	2.5	15	90	4	56	13	2	25	58	1.49
23359615--23359657	17	2.6	16	85	7	50	9	16	0	74	1.06
23360823--23360862	13	3.0	13	85	3	53	50	30	2	17	1.59
23360852--23361015	7	24.7	7	69	11	69	45	34	0	18	1.55
23360849--23360916	34	2.0	34	88	0	100	47	35	2	14	1.60
23360857--23360973	20	5.9	20	73	12	98	47	35	0	17	1.54
23360919--23360994	20	3.8	21	82	6	88	46	30	0	23	1.53
23361417--23361445	14	2.1	14	93	6	51	41	0	3	55	1.17
23362123--23362404	58	4.9	56	77	12	270	36	10	4	48	1.59
23362123--23362404	56	4.9	56	79	9	293	36	10	4	48	1.59
23362123--23362409	114	2.5	115	78	13	322	36	10	4	48	1.58
23363877--23363919	3	14.3	3	100	0	86	67	0	0	32	0.91
23364318--23364747	84	5.1	82	75	9	307	36	17	16	30	1.91
23365055--23365119	23	2.9	22	79	4	85	41	21	13	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23371466--23371622	57	2.8	56	82	4	181	35	8	8	47	1.65
23371624--23371852	59	3.9	59	84	5	288	35	8	6	49	1.59
23371473--23371755	155	1.8	151	85	7	401	34	8	7	49	1.61
23371734--23371759	13	2.0	13	100	0	52	30	0	7	61	1.24
23371624--23371856	119	2.0	115	84	7	299	35	8	6	49	1.58
23371818--23371888	23	3.2	23	63	15	58	42	7	5	45	1.55
23371795--23371888	44	2.1	45	84	7	129	38	5	6	50	1.51
23373312--23373416	12	9.5	11	67	20	51	69	2	1	25	1.12
23373302--23373416	33	3.5	32	76	15	94	70	2	1	25	1.10
23374199--23374244	20	2.3	20	100	0	92	45	15	13	26	1.82
23381985--23382044	23	2.6	24	79	12	63	73	3	3	20	1.12
23382261--23382580	41	7.7	41	79	7	272	40	20	15	23	1.91
23382260--23382459	84	2.4	84	87	5	278	41	20	16	22	1.91
23382260--23382498	84	2.8	83	81	5	214	42	19	15	22	1.89
23383579--23383700	63	1.9	63	88	0	181	31	22	8	37	1.84
23384399--23384480	9	8.6	9	73	15	58	8	17	0	74	1.06
23384399--23384442	21	2.1	22	91	8	74	6	13	0	79	0.92
23384390--23384482	38	2.5	37	81	11	100	10	15	0	74	1.08
23384399--23384443	20	2.2	20	88	7	65	6	15	0	77	0.96
23384399--23384479	21	4.2	19	76	17	67	8	16	0	75	1.04
23388450--23388660	58	3.6	57	85	8	266	39	11	6	43	1.66
23388450--23388660	60	3.6	58	85	7	277	39	11	6	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23389661--23389723	33	1.9	33	96	0	117	34	20	15	28	1.94
23396612--23396657	18	2.5	19	79	10	51	6	0	17	76	1.00
23396693--23396866	46	3.8	45	74	4	143	44	13	9	32	1.77
23396925--23397038	49	2.3	49	86	4	160	36	15	11	35	1.84
23397531--23397570	11	3.6	11	87	9	55	7	12	0	80	0.91
23398075--23398271	108	1.8	108	86	1	288	17	15	12	55	1.69
23413676--23413710	17	2.1	17	88	0	52	0	5	5	88	0.63
23415173--23415217	2	22.5	2	100	0	90	0	48	0	51	1.00
23415376--23415418	17	2.5	17	80	0	59	27	4	6	60	1.43
23419347--23419393	10	4.7	10	78	7	51	2	19	0	78	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190