genome.fa.s223.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  9  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1193577--1193604	2	14.0	2	100	0	56	50	0	0	50	1.00
1194341--1194375	17	2.1	17	94	0	61	31	17	14	37	1.89
1198184--1198210	12	2.2	12	100	0	54	0	7	0	92	0.38
1198545--1198589	19	2.4	19	82	17	58	66	0	0	33	0.92
1198595--1198634	12	3.0	13	85	14	55	30	0	0	70	0.88
1199079--1199123	12	3.8	12	86	11	58	80	17	2	0	0.82
1199085--1199123	6	6.3	6	88	5	60	79	17	2	0	0.84
1199348--1199382	3	11.7	3	100	0	70	34	0	0	65	0.93
1205669--1205718	24	2.1	24	84	0	64	38	0	6	56	1.24
1207756--1207802	16	2.9	15	84	12	58	48	0	0	51	1.00
1207780--1207833	5	11.2	5	82	9	60	57	0	0	42	0.98
1210056--1210094	20	2.0	20	90	5	62	33	0	0	66	0.92
1210211--1211809	608	2.6	600	82	7	1859	34	13	17	34	1.89
1212885--1212936	14	3.6	14	80	10	59	69	0	1	28	0.99
1212866--1212934	19	3.8	19	70	21	58	69	0	1	28	0.97
1212867--1212936	33	2.2	33	82	12	94	70	0	1	28	0.96
1215697--1215744	26	1.9	24	87	8	69	31	0	4	64	1.12
1215735--1215786	20	2.7	20	77	14	63	50	0	0	50	1.00
1215738--1215783	20	2.2	20	88	3	65	47	0	0	52	1.00
1226595--1226620	2	13.0	2	100	0	52	50	0	50	0	1.00
1228899--1228937	2	19.5	2	94	0	69	53	0	0	46	1.00
1231994--1232038	16	2.6	18	86	13	67	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1232018--1232056	13	3.0	13	80	0	51	41	0	0	58	0.98
1235188--1235220	2	16.5	2	100	0	66	51	0	0	48	1.00
1236077--1236105	2	15.0	2	92	7	51	48	0	0	51	1.00
1238476--1238525	25	2.0	25	92	0	82	48	16	20	16	1.82
1248637--1248674	20	1.9	20	88	0	58	47	0	2	50	1.15
1248668--1248701	14	2.3	15	90	5	52	50	0	0	50	1.00
1251382--1251424	14	3.1	14	87	9	54	48	6	2	41	1.43
1261784--1261838	12	4.5	13	73	13	53	30	0	0	69	0.89
1261783--1261856	36	2.0	38	84	5	98	35	0	0	64	0.94
1261761--1261841	10	7.3	11	69	13	58	30	0	0	69	0.89
1261775--1261834	24	2.6	22	75	17	59	30	0	0	70	0.88
1263591--1263661	32	2.3	31	82	2	88	45	2	2	49	1.31
1264680--1264746	22	2.8	24	71	26	61	56	0	4	38	1.19
1264683--1264753	25	3.0	23	75	20	74	57	1	4	36	1.27
1265457--1265515	24	2.5	24	80	5	66	62	1	3	32	1.21
1265456--1265515	13	4.9	12	73	15	52	63	1	3	31	1.20
1265481--1265524	14	3.1	14	81	15	54	63	0	4	31	1.14
1266619--1266646	2	14.0	2	100	0	56	50	0	0	50	1.00
1266911--1266935	2	12.5	2	100	0	50	52	0	0	48	1.00
1269286--1269327	2	23.0	2	81	18	56	47	0	0	52	1.00
1269286--1269325	14	2.8	14	92	3	62	47	0	0	52	1.00
1269899--1270102	58	3.5	59	87	6	272	40	9	4	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270075--1270121	19	2.5	19	96	0	85	44	8	8	38	1.65
1270175--1270210	17	2.1	18	94	5	65	80	0	2	16	0.83
1270236--1270294	3	19.7	3	84	6	75	66	0	5	28	1.13
1271015--1271046	17	1.9	17	93	6	57	75	0	3	21	0.95
1271026--1271150	27	4.8	26	78	12	116	64	1	4	29	1.24
1271026--1271117	27	3.4	28	83	4	125	60	2	6	30	1.34
1271131--1271166	15	2.4	15	95	0	63	75	2	0	22	0.94
1271113--1271168	21	2.6	21	80	11	60	75	1	0	23	0.90
1271118--1271169	27	2.0	26	85	11	70	73	1	0	25	0.94
1271351--1271587	44	5.4	43	88	1	294	44	16	13	25	1.84
1282994--1283088	49	2.0	48	81	6	111	31	13	7	47	1.71
1283041--1283398	115	3.1	110	82	9	414	38	11	5	44	1.64
1283042--1283383	58	5.9	57	84	6	408	38	12	5	43	1.66
1283264--1283358	30	3.2	30	65	19	81	40	11	6	42	1.67
1283042--1283383	59	5.9	58	85	5	421	38	12	5	43	1.66
1283410--1283445	17	2.1	18	94	5	65	80	0	2	16	0.83
1284213--1284245	17	1.9	17	100	0	66	72	0	3	24	0.98
1284225--1284330	27	3.9	27	80	11	112	65	1	4	28	1.23
1284284--1284333	19	2.7	18	82	11	57	72	2	0	26	0.96
1284252--1284344	6	14.3	7	72	17	51	68	2	3	25	1.15
1284212--1284324	17	6.4	17	70	16	61	65	1	4	28	1.22
1284290--1284345	20	2.6	21	80	8	60	75	1	0	23	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1291695--1291757	27	2.3	27	100	0	126	50	0	3	46	1.17
1294542--1294606	33	2.0	33	90	0	103	46	10	10	32	1.73
1297217--1297257	21	2.0	21	100	0	82	43	4	12	39	1.63
1298104--1298168	34	1.9	34	81	6	78	33	13	15	36	1.87
1300224--1300276	22	2.5	22	84	3	63	50	5	0	43	1.25
1301922--1302003	41	2.0	41	92	0	137	37	4	21	35	1.75
1308519--1308584	30	2.2	31	86	8	91	54	0	0	45	0.99
1309464--1309495	15	2.1	15	94	0	55	28	0	0	71	0.86
1315796--1315864	31	2.2	31	89	0	102	40	24	8	26	1.84
1329929--1329965	13	2.7	14	84	15	51	51	2	2	43	1.30
1333281--1333308	11	2.5	11	100	0	56	57	7	0	35	1.26
1335445--1335494	23	2.1	24	82	10	59	48	16	4	32	1.64
1335800--1335836	19	1.9	19	89	10	58	59	16	0	24	1.37
1336131--1336168	20	1.9	20	100	0	76	60	0	5	34	1.19
1337329--1337373	21	2.1	22	80	12	58	42	0	0	57	0.98
1339506--1339549	24	2.0	24	82	13	58	27	27	4	40	1.75
1347161--1347205	23	2.0	23	95	0	81	35	17	17	28	1.93
1349715--1349794	30	2.7	30	82	3	92	43	5	17	33	1.71
1349741--1349805	30	2.2	30	83	5	78	40	4	13	41	1.66
1359675--1359728	15	3.6	15	80	12	58	37	0	0	62	0.95
1359717--1359766	20	2.7	18	76	11	57	50	0	0	50	1.00
1359720--1359763	20	2.3	19	88	4	61	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1363973--1364041	29	2.4	30	80	4	79	42	0	0	57	0.98
1364007--1364092	24	3.5	24	77	13	86	46	0	1	52	1.08
1365112--1365145	18	1.9	18	94	5	61	17	0	5	76	0.98
1366100--1366454	174	2.0	175	95	0	640	30	19	10	39	1.85
1367053--1367107	18	2.8	19	73	15	51	49	3	0	47	1.19
1367115--1367156	20	2.0	21	86	4	59	42	4	0	52	1.22
1368436--1369118	340	2.0	338	99	0	1339	25	17	16	41	1.89
1377959--1377983	13	1.9	13	100	0	50	88	0	12	0	0.53
1378806--1378842	15	2.5	15	86	0	56	5	16	56	21	1.59
1384933--1384975	18	2.5	17	76	3	50	34	4	11	48	1.60
1387014--1387086	29	2.5	30	82	13	89	50	0	0	49	1.00
1387634--1387942	159	1.9	160	87	3	426	27	9	13	49	1.72
1395614--1395648	17	2.0	17	88	5	52	51	8	37	2	1.47
1404063--1404116	23	2.4	23	84	9	67	53	0	3	42	1.18
1409516--1409564	24	2.0	25	84	11	66	42	18	0	38	1.50
1411179--1411232	22	2.5	22	81	0	63	7	7	3	81	0.97
1411312--1411875	35	15.9	35	71	12	310	43	9	23	22	1.83
1411312--1411968	105	6.2	103	70	11	340	43	9	24	23	1.82
1411312--1411805	147	3.5	139	74	11	326	44	9	23	22	1.81
1411860--1411955	35	2.7	35	82	6	97	42	7	26	23	1.80
1411887--1411968	35	2.3	35	85	4	94	39	7	26	26	1.82
1422721--1422745	4	6.2	4	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1424462--1424591	15	8.7	15	72	15	81	19	0	34	46	1.50
1424478--1424548	22	3.2	23	71	13	67	19	0	26	53	1.45
1424471--1424575	15	7.1	16	74	10	82	20	0	31	47	1.51
1424462--1424587	30	4.2	30	74	14	98	19	0	33	47	1.49
1424531--1424596	16	4.2	16	81	9	66	19	0	37	42	1.52
1424881--1424921	3	13.7	3	100	0	82	31	0	0	68	0.90
1425914--1425962	17	2.8	17	78	3	62	6	0	14	79	0.91
1427211--1427324	57	2.0	56	89	5	176	50	9	28	11	1.70
1431098--1431130	3	11.0	3	100	0	66	66	0	0	33	0.92
1434514--1434579	29	2.3	27	82	10	69	30	4	6	59	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190