genome.fa.s223.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  64  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10654065--10655507	695	2.1	699	89	2	2249	26	23	23	27	2.00
10656465--10656498	14	2.4	14	100	0	68	20	26	44	8	1.81
10657245--10657300	26	2.2	26	90	0	85	28	16	23	32	1.96
10658992--10659044	26	2.0	27	92	3	90	26	20	26	26	1.99
10660755--10660807	26	2.0	26	96	0	97	28	20	24	26	1.99
10661655--10661705	26	2.0	26	100	0	102	27	19	27	25	1.99
10662540--10662592	26	2.0	26	92	0	88	28	18	26	26	1.98
10663443--10663495	26	2.0	26	89	7	81	28	16	24	30	1.97
10658119--10670286	898	13.7	897	84	5	14604	25	24	24	25	2.00
10664408--10664441	14	2.4	14	100	0	68	20	26	44	8	1.81
10665188--10665240	26	2.0	26	88	0	79	28	16	24	30	1.97
10666984--10667036	26	2.0	26	92	0	88	28	22	24	24	2.00
10669664--10671581	641	3.0	636	85	6	2174	25	22	24	27	2.00
10671811--10671863	26	2.0	26	92	0	88	26	13	28	32	1.93
10675036--10675088	26	2.0	26	96	0	97	26	24	20	28	1.99
10675935--10675987	26	2.0	26	96	0	97	26	24	20	28	1.99
10676838--10676889	26	2.0	26	96	0	95	32	25	15	26	1.95
10674250--10685541	903	12.8	901	83	6	12689	26	24	23	25	2.00
10678735--10678767	11	3.0	11	90	0	57	21	27	33	18	1.96
10683857--10683909	26	2.0	26	92	0	88	28	28	18	24	1.98
10684754--10684806	26	2.0	26	92	7	90	28	22	20	28	1.99
10684969--10686113	572	2.0	572	91	0	1876	29	23	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10686219--10686302	26	3.0	26	82	15	114	28	26	17	27	1.98
10686227--10686289	31	2.0	31	93	0	108	30	25	15	28	1.96
10687136--10687188	26	2.0	26	100	0	106	26	26	20	26	1.99
10687162--10688630	699	2.1	712	88	2	2221	27	24	22	25	2.00
10688734--10688785	26	2.0	26	84	0	68	28	21	19	30	1.97
10690318--10690367	26	1.9	26	100	0	100	24	28	20	28	1.99
10692085--10692137	26	2.1	25	89	3	79	26	22	20	30	1.98
10693404--10693448	21	2.1	21	88	8	65	22	13	20	44	1.85
10701632--10702250	321	1.9	321	89	1	956	40	13	18	27	1.88
10704154--10704195	21	2.0	21	95	0	75	38	35	0	26	1.57
10705141--10705229	46	1.9	46	88	4	135	35	8	11	43	1.72
10705241--10705279	17	2.3	17	86	0	51	33	15	17	33	1.92
10706881--10706916	3	12.7	3	88	11	58	72	0	0	27	0.85
10707035--10707141	36	2.9	37	83	4	128	44	14	11	29	1.79
10708907--10708959	18	2.8	19	72	16	56	58	15	5	20	1.57
10709040--10709079	21	1.9	21	84	0	53	52	12	12	22	1.72
10709146--10709221	36	2.1	36	85	4	100	40	14	13	31	1.84
10709398--10709471	23	3.3	22	67	14	60	40	16	9	33	1.80
10709234--10709736	46	11.1	44	73	9	307	41	13	9	34	1.78
10709552--10709662	22	5.0	22	66	12	66	43	14	9	33	1.77
10709256--10709762	90	5.6	89	76	7	353	41	13	9	35	1.77
10709678--10709804	65	2.0	65	83	0	164	43	12	7	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10709234--10709762	136	3.9	136	74	7	369	41	13	10	34	1.78
10709744--10709829	44	1.9	45	83	2	111	46	10	6	36	1.65
10709699--10709827	65	2.0	65	85	0	177	44	10	6	37	1.67
10709803--10709874	26	2.8	26	89	2	101	44	12	8	34	1.72
10714000--10714043	20	2.2	21	80	15	58	70	0	18	11	1.16
10715545--10715587	19	2.3	19	95	0	77	46	4	18	30	1.69
10716472--10716781	164	1.9	164	87	5	457	35	14	16	32	1.89
10716804--10717026	83	2.7	83	80	3	225	34	12	13	39	1.82
10716755--10717043	84	3.5	84	76	6	241	35	13	12	38	1.83
10717274--10717381	46	2.3	47	81	10	125	41	10	13	34	1.79
10717366--10717517	46	3.3	46	83	3	200	32	7	11	48	1.68
10717444--10717515	22	3.2	22	71	21	67	33	8	9	48	1.66
10722152--10722318	58	2.8	59	86	1	237	24	8	26	40	1.85
10722356--10722394	1	39.0	1	84	0	51	0	0	7	92	0.39
10724714--10724798	43	2.0	43	88	0	125	37	11	7	43	1.69
10725046--10725125	38	2.1	38	83	6	99	30	12	12	45	1.79
10725962--10726011	25	2.0	25	88	0	73	34	24	8	34	1.84
10726793--10726842	23	2.2	23	96	0	91	50	10	22	18	1.76
10730179--10730237	28	2.1	28	84	6	75	71	5	1	22	1.15
10731140--10731188	3	16.3	3	100	0	98	67	0	0	32	0.91
10731426--10731486	12	4.8	12	80	11	68	34	0	13	52	1.40
10731431--10731475	14	3.3	14	81	3	56	26	0	13	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10731886--10731925	5	8.0	5	83	10	55	17	2	2	77	0.99
10731886--10731938	25	2.3	22	90	9	79	16	1	3	77	1.01
10731886--10731942	30	1.9	30	82	13	73	17	3	3	75	1.09
10731971--10732004	18	1.9	17	88	5	50	76	0	2	20	0.92
10736612--10736879	9	29.7	9	73	20	145	72	0	13	13	1.18
10736650--10736815	50	3.4	47	75	21	153	75	0	10	13	1.05
10736604--10736878	108	2.5	110	79	16	263	71	0	13	14	1.19
10736614--10736892	17	16.2	17	68	21	95	72	0	13	13	1.18
10738317--10738870	43	12.8	43	79	6	465	27	10	15	46	1.79
10739141--10739174	4	8.5	4	87	12	52	23	0	0	76	0.79
10739133--10739174	12	3.6	11	87	9	57	21	0	2	76	0.90
10739195--10739253	26	2.4	25	76	17	61	16	5	11	66	1.41
10739287--10739335	3	16.3	3	100	0	98	67	0	0	32	0.91
10739752--10739791	20	2.0	21	90	5	64	65	0	32	2	1.06
10740063--10740100	5	7.6	5	88	11	60	15	0	2	81	0.80
10740064--10740113	20	2.4	22	90	9	79	14	2	4	80	0.95
10740773--10740807	8	4.5	8	96	3	63	77	0	0	22	0.78
10742763--10742813	17	3.2	16	84	10	54	66	0	1	31	1.03
10743527--10743561	18	1.9	18	94	0	61	51	25	0	22	1.48
10746355--10746397	17	2.4	19	80	7	54	44	0	0	55	0.99
10746388--10746436	13	4.2	12	75	19	50	57	2	0	40	1.10
10746535--10746564	6	5.0	6	95	0	51	13	0	3	83	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10759029--10759148	32	3.8	30	76	14	109	41	3	7	47	1.48
10764322--10764385	33	1.9	33	93	0	110	35	21	6	35	1.79
10766471--10766526	27	2.1	27	100	0	112	53	3	14	28	1.57
10775043--10775104	20	3.2	20	76	21	60	77	0	17	4	0.94
10775554--10775603	19	2.5	20	79	17	52	78	2	12	8	1.05
10775550--10775651	46	2.3	43	82	11	118	77	2	10	8	1.09
10777730--10778146	40	10.4	40	74	7	213	34	13	11	39	1.81
10777685--10777959	120	2.3	121	78	6	281	35	14	10	38	1.82
10777688--10778146	121	3.8	120	77	7	391	34	14	11	38	1.83
10777685--10778130	80	5.6	79	73	6	292	34	14	12	38	1.84
10778229--10778457	62	3.7	60	75	6	197	27	19	16	37	1.92
10778229--10778463	124	1.9	125	83	2	303	27	18	15	38	1.91
10781896--10781967	22	3.8	20	72	22	64	40	2	1	55	1.23
10781931--10781963	15	2.1	17	88	11	52	30	0	3	66	1.06
10784504--10784581	42	2.0	42	82	12	103	35	1	5	57	1.29
10784717--10784762	23	2.0	23	83	8	58	34	2	2	60	1.21
10785157--10785218	21	3.0	22	75	17	60	33	4	4	56	1.42
10785277--10785403	68	1.9	68	84	0	173	30	17	3	48	1.65
10787409--10787537	3	41.0	3	71	20	86	59	2	6	31	1.36
10787487--10787546	18	3.4	18	71	19	63	58	0	11	30	1.34
10787679--10787721	22	2.0	22	90	0	68	65	0	0	34	0.93
10788738--10788867	14	9.6	14	69	10	74	48	19	6	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10788738--10788843	27	4.0	26	71	6	86	50	19	4	24	1.66
10796176--10796248	35	2.1	35	89	5	112	23	17	12	46	1.82
10801526--10801575	24	2.1	24	88	7	75	54	8	16	22	1.68
10801718--10801761	23	1.9	23	95	0	79	45	9	13	31	1.75
10805745--10805788	22	2.0	22	95	0	79	40	11	13	34	1.81
10807232--10807445	109	2.0	109	99	0	419	32	19	14	33	1.92
10814930--10815146	117	1.9	116	83	6	278	39	8	6	45	1.61
10815135--10815186	28	1.9	26	85	14	70	13	1	3	80	0.93
10815363--10815404	23	1.9	21	90	9	66	76	9	0	14	1.02
10817546--10817644	43	2.3	42	81	6	119	41	19	12	27	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190