genome.fa.s223.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  68  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11291645--11295104	887	3.9	892	86	4	4501	24	24	25	25	2.00
11294903--11295301	201	2.0	196	84	3	512	26	20	28	24	1.99
11295823--11295873	23	2.1	26	85	10	72	27	17	25	29	1.98
11296593--11296645	26	2.0	26	96	0	97	26	18	26	28	1.98
11297495--11297547	26	2.0	26	96	0	97	26	18	26	28	1.98
11295983--11297887	903	2.1	900	87	3	2688	25	23	24	26	2.00
11298272--11298322	26	2.0	26	92	0	84	31	25	13	29	1.94
11300020--11300072	26	2.0	26	92	0	88	28	24	18	28	1.98
11302626--11302676	26	2.0	25	84	3	66	27	25	17	29	1.98
11303528--11303578	26	2.0	26	88	3	77	25	29	19	25	1.99
11304423--11304473	26	2.0	26	88	0	75	29	23	19	27	1.98
11301774--11306289	902	5.1	897	86	3	5939	25	24	23	26	2.00
11306491--11306543	26	2.0	26	96	0	97	26	28	20	24	1.99
11306007--11306599	296	2.0	298	85	2	807	19	27	29	23	1.98
11308287--11308338	26	2.0	26	92	0	86	28	23	19	28	1.98
11308583--11308635	26	2.0	26	96	0	97	26	24	20	28	1.99
11308113--11308695	296	2.0	297	87	1	839	19	27	29	23	1.98
11309452--11309504	26	2.0	26	96	0	97	26	28	20	24	1.99
11310346--11310394	26	1.9	26	95	4	91	22	28	20	28	1.98
11311246--11311297	25	2.0	26	88	3	79	26	25	21	26	1.99
11312136--11312188	26	2.0	26	92	0	88	30	24	18	26	1.98
11308818--11315322	897	7.3	897	83	6	7493	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11313916--11313968	26	2.0	26	88	0	79	30	22	18	28	1.98
11315411--11315462	26	2.0	26	92	7	88	30	26	15	26	1.96
11317201--11317253	26	2.0	26	96	0	97	26	28	20	24	1.99
11315346--11324048	901	9.7	901	86	3	10983	25	24	23	25	2.00
11318969--11319021	26	2.0	26	92	0	88	28	24	18	28	1.98
11321665--11321717	26	2.0	26	88	0	79	30	20	16	32	1.95
11322561--11322613	26	2.0	26	96	0	97	28	26	18	26	1.98
11323462--11323514	26	2.0	26	96	0	97	28	26	18	26	1.98
11327157--11327209	26	2.0	26	96	0	97	26	28	20	24	1.99
11328052--11328103	25	2.0	26	88	3	79	28	23	19	28	1.98
11328343--11328395	26	2.0	26	96	0	97	26	24	20	28	1.99
11329210--11329262	26	2.0	26	92	0	88	28	28	18	24	1.98
11330104--11330153	26	1.9	26	100	0	100	24	28	20	28	1.99
11331910--11331962	26	2.0	26	92	0	88	30	24	18	26	1.98
11328576--11335108	901	7.3	901	85	4	7743	26	24	23	25	2.00
11333690--11333742	26	2.0	26	88	0	79	30	22	18	28	1.98
11335197--11335248	26	2.0	26	92	7	88	30	26	15	26	1.96
11336974--11337026	26	2.0	26	92	0	88	26	26	20	26	1.99
11338752--11338804	26	2.0	26	92	0	88	28	24	18	28	1.98
11341446--11341498	26	2.0	26	88	0	79	30	20	16	32	1.95
11342333--11342384	25	2.0	26	88	3	79	26	25	21	26	1.99
11343232--11343284	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11337876--11346572	889	9.8	901	87	4	11194	25	24	23	25	2.00
11344133--11344185	26	2.0	26	96	0	97	28	26	18	26	1.98
11347387--11347439	26	2.0	26	92	7	90	28	28	16	26	1.97
11349173--11349225	26	2.0	26	96	0	97	26	24	20	28	1.99
11348292--11352729	893	5.0	874	83	7	4813	26	24	23	25	2.00
11351823--11351875	26	2.0	26	92	0	88	30	26	18	24	1.98
11353253--11353305	26	2.0	26	92	0	88	30	20	24	24	1.99
11352879--11355873	901	3.3	887	86	4	3952	25	23	24	25	2.00
11355064--11355116	26	2.0	26	92	0	88	28	18	24	28	1.98
11352879--11355873	885	3.3	888	85	5	3886	25	23	24	25	2.00
11357577--11357629	26	2.0	26	88	0	79	26	22	24	26	2.00
11357286--11359572	876	2.6	878	83	5	2812	25	24	25	24	2.00
11359348--11359400	26	2.0	26	96	0	97	30	20	20	28	1.98
11360200--11360249	25	2.0	26	88	4	75	30	18	24	28	1.97
11360749--11360799	26	2.0	26	92	0	84	29	13	23	33	1.93
11361650--11361705	26	2.2	26	96	0	103	26	17	25	30	1.97
11360690--11375524	905	16.6	899	79	8	13721	25	24	24	25	2.00
11365172--11365224	26	2.0	26	88	0	79	28	16	26	28	1.97
11367112--11367157	18	2.6	18	93	3	76	67	8	2	21	1.29
11367928--11367980	26	2.0	26	96	0	97	28	20	24	26	1.99
11368814--11368866	26	2.0	26	92	0	88	30	20	20	28	1.98
11369706--11369756	26	2.0	26	100	0	102	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11370615--11370667	26	2.0	26	96	0	97	28	20	24	26	1.99
11367200--11375524	909	9.4	901	85	4	10363	25	24	24	25	2.00
11373253--11373304	26	2.0	26	92	0	86	30	19	25	25	1.98
11374154--11374206	26	2.0	26	100	0	106	26	16	26	30	1.97
11373126--11375526	895	2.7	888	84	5	3047	25	24	24	25	2.00
11376728--11376778	26	2.0	26	92	7	86	29	19	21	29	1.98
11377618--11377671	26	2.1	26	96	0	99	27	22	24	25	2.00
11378524--11378576	26	2.0	26	96	0	97	28	22	24	24	2.00
11375853--11388842	905	14.3	904	78	8	11781	25	24	24	25	2.00
11379425--11379477	26	2.0	26	92	0	88	26	20	24	28	1.99
11381237--11381605	158	2.3	160	83	2	449	23	26	27	21	1.99
11383574--11383620	25	1.9	25	86	4	69	25	10	8	55	1.62
11381397--11388842	888	8.3	892	85	5	9120	25	24	25	25	2.00
11384043--11384095	26	2.0	26	96	0	97	26	18	26	28	1.98
11384937--11384989	26	2.0	26	92	0	88	26	16	26	30	1.97
11381397--11388842	902	8.3	889	85	5	8764	25	24	25	25	2.00
11385835--11385885	26	2.0	26	92	0	84	29	17	25	27	1.98
11386738--11386787	26	1.9	26	95	0	91	28	22	24	26	1.99
11386906--11386930	11	2.3	11	100	0	50	28	24	20	28	1.99
11387605--11387657	26	2.0	26	96	0	97	26	18	26	28	1.98
11388407--11388439	11	3.0	11	100	0	66	18	36	27	18	1.94
11390063--11390115	26	2.0	26	88	0	79	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11390248--11390300	26	2.0	26	92	0	88	28	18	24	28	1.98
11390036--11390385	185	1.9	185	91	2	569	23	27	27	21	1.99
11390550--11390600	26	2.0	26	92	0	84	29	23	19	27	1.98
11390736--11390787	26	2.0	26	96	0	95	26	17	26	28	1.97
11391040--11391089	26	1.9	26	87	0	73	28	18	26	28	1.98
11389904--11391249	487	2.8	488	84	2	1713	23	30	25	19	1.98
11392425--11392477	26	2.0	26	96	0	97	28	16	24	30	1.97
11391517--11393003	492	3.0	493	92	3	2324	27	25	23	24	2.00
11392920--11392972	26	2.0	26	92	0	88	26	13	26	33	1.93
11393776--11393828	26	2.0	26	88	0	79	26	18	26	28	1.98
11394645--11394697	26	2.0	26	85	0	70	30	18	22	28	1.98
11397223--11397301	26	3.0	26	98	0	149	29	20	24	26	1.99
11398147--11398199	26	2.0	26	96	0	97	28	20	24	26	1.99
11396774--11400963	896	4.6	899	87	4	5603	25	24	24	25	2.00
11400872--11401070	107	1.9	107	86	6	287	25	27	31	15	1.96
11401687--11401739	26	2.0	26	82	7	63	28	18	22	30	1.98
11402107--11402157	26	2.0	26	84	0	66	25	11	9	52	1.68
11402580--11402632	26	2.0	26	96	0	97	26	20	24	28	1.99
11403562--11403612	26	2.0	26	96	0	93	27	27	19	25	1.99
11403166--11404765	815	2.0	814	87	4	2341	23	26	25	24	2.00
11406503--11406556	26	2.1	26	96	0	99	27	22	24	25	2.00
11407409--11407461	26	2.0	26	92	0	88	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11406255--11417742	904	12.6	905	75	10	8401	25	24	24	25	2.00
11409213--11409265	26	2.0	26	92	0	88	28	20	22	28	1.99
11410121--11410174	29	2.0	26	89	10	81	29	16	27	25	1.97
11411049--11411402	158	2.2	159	80	4	403	22	28	27	21	1.99
11412944--11412996	26	2.0	26	88	0	79	24	20	28	26	1.99
11413842--11413894	26	2.0	26	100	0	106	26	20	26	26	1.99
11414710--11414760	26	2.0	26	92	0	84	29	17	23	29	1.97
11415610--11415662	26	2.0	26	88	0	79	26	18	24	30	1.98
11415807--11415831	11	2.3	11	100	0	50	28	16	20	36	1.93
11416504--11416556	26	2.0	26	88	0	79	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190