genome.fa.s223.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  104  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16333637--16333689	26	2.0	26	89	7	81	35	24	13	26	1.92
16334539--16334586	25	1.9	25	95	0	87	27	29	18	25	1.98
16333620--16339848	896	7.0	896	84	6	7712	25	24	24	25	2.00
16338946--16338998	26	2.0	26	92	0	88	26	22	22	28	1.99
16338080--16339848	894	2.0	895	88	1	2670	25	24	24	25	2.00
16342091--16342144	26	2.1	26	100	0	108	24	25	22	27	2.00
16341234--16345999	874	5.4	874	83	6	5508	25	24	24	25	2.00
16347702--16347754	26	2.0	26	92	0	88	30	20	22	26	1.98
16346399--16349566	892	3.6	886	85	4	3973	25	23	24	26	2.00
16349491--16349543	26	2.0	26	92	0	88	26	18	24	30	1.98
16350323--16350375	26	2.0	26	92	0	88	28	18	24	28	1.98
16351885--16351937	26	2.0	26	96	0	97	26	18	26	28	1.98
16352786--16352838	26	2.0	26	92	0	88	26	18	24	30	1.98
16354359--16354411	26	2.0	26	96	0	97	26	20	24	28	1.99
16355990--16356042	26	2.0	26	96	0	97	26	18	26	28	1.98
16355417--16356791	685	2.0	685	86	3	1900	26	23	22	27	2.00
16356570--16356602	11	3.0	11	95	0	57	18	39	27	15	1.90
16357582--16357634	26	2.0	26	96	0	97	26	22	26	24	2.00
16358494--16358546	26	2.0	26	88	0	79	28	20	26	24	1.99
16360232--16360283	26	2.0	26	96	3	97	26	21	25	26	1.99
16361147--16361199	26	2.0	26	96	0	97	26	18	26	28	1.98
16359370--16363371	895	4.4	889	84	5	4739	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16363735--16363787	26	2.0	26	88	0	79	28	20	22	28	1.99
16362577--16364163	793	2.0	791	83	7	1993	26	25	24	23	2.00
16364632--16364684	26	2.0	26	100	0	106	26	20	26	26	1.99
16365426--16365478	26	2.0	26	88	0	79	28	20	22	28	1.99
16364273--16366647	795	3.0	782	85	4	3097	25	24	25	23	2.00
16366219--16366271	26	2.0	26	96	0	97	24	20	28	26	1.99
16365862--16369475	897	4.0	896	84	4	4473	25	23	24	26	2.00
16369630--16369682	26	2.0	26	92	0	88	30	20	22	26	1.98
16370532--16370584	26	2.0	26	88	0	79	26	16	26	30	1.97
16370558--16370932	159	2.4	159	84	0	473	24	27	28	19	1.99
16372299--16372380	26	3.2	26	94	3	139	26	17	23	32	1.96
16373214--16373266	26	2.0	26	96	0	97	26	18	26	28	1.98
16374119--16374171	26	2.0	26	92	0	88	30	20	22	26	1.98
16371561--16375792	892	4.7	896	86	3	5600	25	23	24	26	2.00
16375011--16375063	26	2.0	26	100	0	106	26	20	26	26	1.99
16375633--16375958	163	2.0	163	91	2	530	25	30	26	18	1.98
16378858--16378910	26	2.0	26	96	0	97	32	20	20	26	1.98
16379294--16379351	26	2.3	26	81	3	64	22	5	18	53	1.64
16379750--16379801	25	2.0	26	92	3	88	26	19	25	28	1.98
16377989--16379977	892	2.2	881	86	4	2780	25	23	25	25	2.00
16380163--16380215	26	2.0	26	92	0	88	30	20	22	26	1.98
16379610--16380601	414	2.4	410	89	2	1479	22	30	26	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16380907--16380958	26	2.0	26	92	0	86	25	19	26	28	1.98
16380728--16382617	903	2.1	902	84	2	2489	24	25	24	25	2.00
16383283--16383333	26	2.0	26	92	0	84	29	13	23	33	1.93
16383734--16383878	76	1.9	76	91	0	236	20	12	23	43	1.86
16386869--16386921	26	2.0	26	92	0	88	28	18	24	28	1.98
16383796--16387799	887	4.5	883	83	6	4942	25	24	24	25	2.00
16390142--16390194	26	2.0	26	85	0	70	26	16	26	30	1.97
16391043--16391094	26	2.0	26	96	0	95	28	19	25	26	1.98
16388900--16392072	901	3.6	897	86	4	4299	25	24	25	25	2.00
16391945--16391997	26	2.0	26	96	0	97	26	18	26	28	1.98
16393448--16393500	26	2.0	26	92	0	88	30	18	24	26	1.98
16392557--16393878	660	2.0	661	92	0	2173	25	23	24	26	2.00
16394185--16394234	26	1.9	26	91	0	82	28	20	30	22	1.98
16394209--16394582	157	2.4	160	84	4	474	23	27	29	19	1.98
16395224--16395279	26	2.2	26	93	0	94	28	17	23	30	1.97
16396810--16396862	26	2.0	26	92	0	88	28	18	24	28	1.98
16397713--16397765	26	2.0	26	92	0	88	30	18	24	26	1.98
16398638--16398690	26	2.0	26	96	0	97	26	20	24	28	1.99
16399520--16399571	26	2.0	26	92	3	88	26	15	25	32	1.95
16400422--16400474	26	2.0	26	96	0	97	26	20	24	28	1.99
16396067--16406645	902	11.8	902	85	4	13321	25	24	24	25	2.00
16401322--16401374	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16402631--16402687	26	2.2	26	84	3	71	22	7	19	50	1.71
16404878--16404927	26	1.9	26	91	0	82	30	18	26	26	1.98
16405763--16405815	26	2.0	26	96	0	97	26	18	26	28	1.98
16407192--16407243	26	2.0	26	96	0	95	26	17	26	28	1.97
16406645--16408937	904	2.5	897	89	2	3389	25	23	24	25	2.00
16410174--16410226	26	2.0	26	85	0	70	30	16	24	28	1.97
16411085--16411137	26	2.0	26	88	0	79	28	20	24	26	1.99
16409470--16412866	864	3.8	893	85	6	4413	25	23	24	26	2.00
16413178--16413228	26	2.0	26	96	0	93	27	17	27	27	1.98
16412966--16417578	873	5.2	883	87	4	6256	24	24	25	25	2.00
16414948--16415000	26	2.0	26	100	0	106	26	20	26	26	1.99
16414075--16417578	890	3.9	892	87	4	4918	25	23	25	25	2.00
16416718--16416770	26	2.0	26	92	0	88	28	20	22	28	1.99
16418154--16418206	26	2.0	26	100	0	106	26	26	20	26	1.99
16418893--16418944	26	2.0	26	92	3	88	26	26	19	26	1.99
16419783--16419835	26	2.0	26	92	0	88	28	22	20	28	1.99
16420683--16420735	26	2.0	26	92	0	88	28	24	20	26	1.99
16418870--16421453	899	2.9	896	88	2	3750	25	24	24	25	2.00
16422316--16422368	26	2.0	26	85	7	72	28	16	20	33	1.95
16423218--16423270	26	2.0	26	96	0	97	28	26	18	26	1.98
16423474--16424236	380	2.0	380	89	2	1176	36	19	17	27	1.93
16424487--16424538	25	2.0	26	96	3	97	26	25	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16425382--16425437	26	2.1	27	87	6	80	28	28	17	25	1.98
16423854--16427194	883	3.8	875	82	7	4085	26	25	23	24	2.00
16427165--16427217	26	2.0	26	88	0	79	28	22	18	30	1.98
16427008--16427424	185	2.3	183	86	2	586	22	28	26	22	1.99
16427350--16427402	26	2.0	26	96	0	97	24	26	22	26	2.00
16427483--16430058	902	2.9	861	83	7	3260	25	24	24	25	2.00
16429104--16429156	26	2.0	26	100	0	106	30	26	16	26	1.97
16427198--16430022	902	3.2	897	82	7	3134	25	24	24	25	2.00
16429826--16430191	159	2.3	159	84	2	468	20	27	28	23	1.99
16430165--16430217	26	2.0	26	96	0	97	28	26	18	26	1.98
16429976--16432898	904	3.3	891	81	7	3380	25	24	24	25	2.00
16432689--16433087	189	2.1	184	88	2	591	20	29	27	22	1.99
16433035--16433086	26	2.0	26	100	0	104	23	26	23	26	2.00
16435711--16435763	26	2.0	26	96	0	97	26	24	20	28	1.99
16434845--16436981	877	2.4	883	84	5	2597	26	24	24	25	2.00
16433059--16436981	879	4.4	868	83	6	4656	25	24	24	25	2.00
16437250--16437302	26	2.0	26	92	0	88	28	24	20	26	1.99
16438148--16438200	26	2.0	26	92	0	88	24	24	20	30	1.99
16439038--16439090	26	2.0	26	100	0	106	26	26	20	26	1.99
16440815--16440865	26	2.0	26	88	0	75	25	25	17	31	1.97
16441717--16441769	26	2.0	26	92	0	88	26	26	18	28	1.98
16442135--16442187	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16442413--16451869	863	10.7	873	80	9	9494	25	24	24	25	2.00
16444694--16444746	26	2.0	26	96	0	97	26	24	20	28	1.99
16446413--16446465	26	2.0	26	92	0	88	26	26	20	26	1.99
16447317--16447369	26	2.0	26	96	0	97	26	24	20	28	1.99
16448210--16448288	26	3.0	26	88	0	122	31	26	16	25	1.96
16454263--16454315	26	2.0	26	92	0	88	30	24	18	26	1.98
16455173--16455222	26	1.9	26	91	0	82	26	30	14	30	1.94
16456058--16456110	26	2.0	26	96	0	97	26	24	20	28	1.99
16457921--16457973	26	2.0	26	88	0	79	32	26	16	24	1.97
16458823--16458870	25	1.9	25	87	8	71	25	29	16	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190