genome.fa.s223.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  96  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15180370--15180422	26	2.0	26	88	0	79	28	26	16	28	1.97
15181108--15181458	160	2.2	159	82	1	425	19	27	28	24	1.98
15181439--15181536	26	3.8	26	94	0	160	30	27	16	25	1.96
15181281--15181721	237	1.9	237	83	1	571	22	26	25	25	2.00
15181669--15181721	26	2.0	26	88	0	79	26	24	18	30	1.98
15182570--15182622	26	2.0	26	100	0	106	30	26	16	26	1.97
15181650--15183729	904	2.3	902	88	1	3062	24	24	24	25	2.00
15183474--15183526	26	2.0	26	88	0	79	30	24	16	28	1.97
15185116--15185168	26	2.0	26	96	0	97	28	28	16	26	1.97
15186019--15186071	26	2.0	26	88	0	79	30	24	18	26	1.98
15183738--15186919	903	3.5	897	86	2	4329	26	25	23	24	2.00
15186495--15186551	26	2.2	25	78	6	60	57	12	7	22	1.58
15188622--15188674	26	2.0	26	88	0	79	28	16	24	30	1.97
15186924--15193029	878	7.0	866	81	8	6303	25	24	24	25	2.00
15190163--15190194	12	2.7	12	95	0	55	34	18	34	12	1.89
15193686--15193738	26	2.0	26	92	0	88	28	18	24	28	1.98
15194570--15194622	26	2.0	26	92	0	88	28	20	22	28	1.99
15195461--15195513	26	2.0	26	88	0	79	28	20	24	26	1.99
15192942--15197609	891	5.3	884	85	5	5805	25	24	24	25	2.00
15196365--15196417	26	2.0	26	92	0	88	30	20	22	26	1.98
15197821--15197871	26	2.0	26	100	0	102	29	19	27	23	1.98
15198004--15198056	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15198902--15198954	26	2.0	26	96	0	97	28	20	22	28	1.99
15198936--15200389	731	2.0	738	89	1	2240	26	22	24	26	2.00
15200519--15200571	26	2.0	26	92	0	88	28	18	24	28	1.98
15199734--15202977	897	3.7	865	85	6	4199	25	24	24	26	2.00
15202262--15202314	26	2.0	26	100	0	106	26	20	26	26	1.99
15208306--15208358	26	2.0	26	89	7	81	26	16	24	32	1.97
15209207--15209259	26	2.0	26	92	0	88	28	18	26	26	1.98
15210487--15210539	26	2.0	26	92	7	90	30	26	16	26	1.97
15209920--15213060	894	3.5	888	90	1	4727	26	24	24	24	2.00
15212270--15212322	26	2.0	26	92	0	88	30	26	18	24	1.98
15212296--15213757	716	2.0	710	89	2	2241	26	24	24	25	2.00
15213884--15218198	905	4.8	898	86	3	5865	25	24	24	25	2.00
15215665--15215717	26	2.0	26	96	0	97	26	26	18	28	1.98
15219860--15220784	466	2.0	465	96	0	1699	26	21	24	28	1.99
15220608--15220958	174	2.0	175	88	2	519	40	16	15	27	1.88
15222030--15222082	26	2.0	26	96	0	97	28	26	18	26	1.98
15223760--15223811	25	2.0	26	88	3	79	28	23	19	28	1.98
15222202--15227721	891	6.2	894	84	6	6474	25	24	24	25	2.00
15226405--15226457	26	2.0	26	92	0	88	28	24	18	28	1.98
15227388--15227419	11	2.9	11	95	0	55	18	34	34	12	1.89
15227721--15235075	897	8.2	891	85	4	9278	25	25	23	25	2.00
15233429--15233481	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15232722--15235076	892	2.6	890	87	3	3248	26	24	22	26	2.00
15236695--15236747	26	2.0	26	100	0	106	30	26	16	26	1.97
15235816--15244829	903	10.1	901	85	3	11669	25	25	23	25	2.00
15238488--15238540	26	2.0	26	100	0	106	26	26	20	26	1.99
15239392--15239444	26	2.0	26	89	7	81	28	24	20	26	1.99
15240250--15240299	26	1.9	26	91	0	82	22	26	20	32	1.98
15241154--15241206	26	2.0	26	96	0	97	28	24	20	26	1.99
15242057--15242109	26	2.0	26	96	0	97	28	26	18	26	1.98
15243843--15243895	26	2.0	26	88	0	79	26	24	18	30	1.98
15244595--15245013	185	2.3	184	82	3	493	23	29	25	21	1.99
15247435--15247485	26	2.0	26	92	0	84	33	25	13	27	1.94
15248452--15248505	26	2.1	26	96	0	99	24	24	24	27	2.00
15249196--15249246	26	2.0	26	96	0	93	27	27	17	27	1.98
15248431--15249857	751	1.9	740	87	2	2054	27	23	23	25	2.00
15250085--15250137	26	2.0	26	100	0	106	26	26	20	26	1.99
15253154--15253206	26	2.0	26	96	0	97	26	24	20	28	1.99
15252279--15256023	874	4.2	875	81	7	3795	25	24	24	25	2.00
15254028--15254080	26	2.0	26	85	7	72	33	22	15	28	1.94
15253390--15256030	873	3.0	890	81	6	3159	26	24	23	25	2.00
15255804--15255856	26	2.0	26	92	0	88	28	24	20	26	1.99
15257552--15257604	26	2.0	26	88	0	79	28	22	20	28	1.99
15257048--15259356	880	2.6	877	83	5	2575	26	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15259262--15259584	173	1.9	173	87	1	477	21	29	26	22	1.99
15259508--15259561	26	2.1	26	89	0	81	29	25	16	27	1.97
15260406--15260458	26	2.0	26	100	0	106	26	26	20	26	1.99
15260592--15260642	26	2.0	26	88	0	75	27	27	17	27	1.98
15260247--15260662	185	2.3	186	85	3	547	21	27	28	23	1.99
15261488--15261546	26	2.3	26	91	5	95	30	27	16	25	1.97
15262381--15262433	26	2.0	26	88	0	79	26	18	22	32	1.97
15262617--15262648	12	2.7	12	95	0	55	12	34	18	34	1.89
15260518--15277599	901	19.1	889	83	5	19544	25	24	24	25	2.00
15266851--15266903	26	2.0	26	92	0	88	26	26	18	28	1.98
15264162--15277599	902	15.0	902	86	3	17097	25	24	24	25	2.00
15271338--15271390	26	2.0	26	92	0	88	26	26	18	28	1.98
15273830--15273865	17	2.1	17	94	0	63	8	47	19	25	1.77
15274904--15274956	26	2.0	26	88	0	79	28	28	18	24	1.98
15275802--15275854	26	2.0	26	92	0	88	26	26	20	26	1.99
15272242--15277599	899	6.0	898	84	4	6638	25	24	24	25	2.00
15277399--15277917	159	3.2	159	81	4	510	21	28	27	22	1.99
15277482--15277917	159	2.7	157	83	3	516	21	30	27	21	1.98
15277891--15277943	26	2.0	26	88	0	79	30	28	16	24	1.97
15278545--15278576	12	2.7	12	95	0	55	25	21	40	12	1.88
15278668--15278720	26	2.0	26	96	0	97	28	26	18	26	1.98
15280254--15280658	159	2.6	159	81	5	446	19	28	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15282187--15282239	26	2.0	26	96	0	97	28	26	18	26	1.98
15283092--15283144	26	2.0	26	96	0	97	30	26	15	28	1.96
15281306--15290159	906	9.7	903	79	8	8961	25	25	23	25	2.00
15284881--15284932	26	2.0	26	92	7	88	28	23	19	28	1.98
15285719--15285771	26	2.0	26	88	0	79	28	22	18	30	1.98
15286616--15286668	26	2.0	26	96	0	97	26	24	20	28	1.99
15286678--15286966	156	1.9	156	86	1	418	16	24	36	22	1.94
15287676--15287728	26	2.0	26	88	0	79	28	22	18	30	1.98
15288582--15288634	26	2.0	26	88	0	79	30	24	16	28	1.97
15289057--15289114	26	2.2	26	81	9	64	62	8	6	22	1.48
15291084--15291135	25	2.0	26	85	3	70	30	23	19	26	1.98
15291983--15292054	26	2.8	26	93	0	126	27	29	18	25	1.98
15292912--15292964	26	2.0	26	92	0	88	30	26	18	24	1.98
15293804--15293856	26	2.0	26	96	0	97	26	24	20	28	1.99
15296485--15296537	26	2.0	26	88	0	79	26	24	20	28	1.99
15297350--15297402	26	2.0	26	92	0	88	28	24	16	30	1.97
15298171--15298223	26	2.0	26	96	0	97	26	24	20	28	1.99
15299279--15299308	13	2.3	13	100	0	60	20	13	33	33	1.91
15300876--15300928	26	2.0	26	96	0	97	26	28	20	24	1.99
15301765--15301817	26	2.0	26	85	0	70	30	20	20	28	1.98
15298027--15310499	904	13.9	891	84	5	14983	25	25	23	25	2.00
15302665--15302717	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15303539--15303591	26	2.0	26	96	0	97	26	24	20	28	1.99
15303742--15303773	13	2.5	13	89	0	55	18	18	34	28	1.95
15307141--15307190	26	1.9	26	95	0	91	26	24	20	30	1.98
15304451--15310499	903	6.7	903	85	4	7488	26	24	23	25	2.00
15308033--15308085	26	2.0	26	88	0	79	28	24	18	28	1.98
15308937--15308989	26	2.0	26	88	0	79	26	28	20	24	1.99
15309840--15309892	26	2.0	26	96	0	97	24	26	20	28	1.99
15311545--15311602	26	2.2	26	90	3	89	29	24	18	27	1.98
15312443--15312495	26	2.0	26	88	0	79	30	24	16	28	1.97
15314218--15314270	26	2.0	26	88	0	79	30	24	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190