genome.fa.s223.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  61  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10110575--10110636	29	2.2	28	85	8	81	32	11	8	48	1.68
10111373--10111416	22	2.0	22	91	8	72	31	9	13	45	1.75
10111564--10111623	25	2.5	25	89	5	88	13	25	18	43	1.86
10115269--10115312	22	2.0	22	95	0	79	31	11	13	43	1.80
10122261--10122342	39	2.1	39	86	0	110	25	10	14	48	1.76
10123254--10123299	21	2.2	21	88	7	67	54	19	0	26	1.44
10123836--10124425	259	2.3	259	83	0	723	40	20	7	31	1.80
10125959--10126019	27	2.1	28	82	11	70	24	31	3	40	1.71
10129138--10129221	42	2.0	42	92	0	141	25	14	14	46	1.82
10133285--10133333	21	2.3	22	86	10	66	16	0	12	71	1.14
10133350--10133388	15	2.5	17	80	20	57	23	0	2	74	0.94
10133586--10133645	9	6.4	9	72	14	50	71	0	3	25	1.01
10133599--10133638	20	2.0	20	90	9	64	75	0	2	22	0.93
10133587--10133645	30	2.0	29	83	9	75	72	0	3	23	0.99
10134882--10134933	23	2.2	24	81	18	65	25	1	11	61	1.40
10139903--10139957	27	2.0	27	82	6	67	76	0	1	21	0.88
10140161--10140195	16	2.2	16	89	0	52	51	0	0	48	1.00
10140291--10140330	13	2.9	13	88	7	53	72	5	0	22	1.04
10141169--10141221	22	2.4	22	81	6	63	30	20	28	20	1.98
10143449--10143492	22	2.0	22	86	8	63	59	6	4	29	1.44
10143454--10143507	28	1.9	28	88	7	83	59	5	3	31	1.38
10143711--10143761	17	2.8	18	88	8	77	27	1	3	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10143712--10143790	18	4.5	17	72	22	65	25	1	3	69	1.12
10143893--10143928	16	2.2	17	90	5	56	41	0	2	55	1.14
10144018--10144312	9	30.8	9	66	17	69	37	2	5	54	1.37
10144119--10144399	10	28.6	10	66	15	72	37	1	5	55	1.32
10144201--10144255	19	2.9	19	84	7	60	27	0	9	63	1.24
10144210--10144285	19	4.0	18	80	8	71	32	0	7	59	1.26
10144252--10144312	29	2.1	29	87	6	88	37	1	6	54	1.37
10144195--10144399	20	10.4	18	70	16	90	35	0	6	56	1.32
10144264--10144334	29	2.5	30	82	11	78	43	1	2	52	1.24
10144330--10144373	19	2.2	20	88	4	63	25	0	9	65	1.21
10144359--10144405	20	2.2	22	81	7	53	31	4	4	59	1.36
10146516--10146540	13	1.9	13	100	0	50	80	0	0	20	0.72
10146717--10146778	11	5.6	10	73	19	52	72	1	22	3	1.08
10150902--10150966	19	3.5	19	78	4	69	41	40	4	13	1.66
10154480--10154529	21	2.3	22	83	10	59	30	0	26	44	1.55
10154480--10154531	22	2.4	21	84	9	61	28	0	26	44	1.55
10155200--10155239	20	2.0	21	90	5	64	35	17	17	30	1.93
10159612--10160061	128	3.5	127	78	9	413	42	8	5	43	1.57
10160209--10160243	12	2.8	13	86	8	54	71	0	0	28	0.86
10160322--10160352	10	3.0	10	90	9	53	58	0	0	41	0.98
10160345--10160374	11	2.7	11	89	0	51	76	0	0	23	0.78
10168305--10168341	11	3.4	11	96	0	65	8	0	21	70	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10168802--10168989	53	3.5	52	79	9	218	48	10	14	26	1.75
10168783--10168989	108	1.9	110	89	7	325	51	9	13	25	1.70
10172612--10172650	21	1.9	20	85	15	53	71	10	17	0	1.12
10173003--10173102	20	5.2	19	78	10	98	79	1	15	5	0.96
10173002--10173122	39	3.2	36	75	19	113	76	0	17	4	1.00
10173002--10173127	19	6.7	19	75	13	84	77	0	16	4	0.98
10173062--10173127	27	2.4	26	90	9	105	78	0	18	3	0.87
10174481--10174637	25	6.6	24	73	13	110	37	7	14	40	1.75
10174511--10174752	21	10.7	21	78	11	108	37	9	16	37	1.81
10174529--10174729	71	2.9	71	85	3	275	36	8	16	38	1.80
10174474--10174753	46	6.2	46	85	5	226	36	8	16	38	1.80
10174481--10174707	117	1.9	117	88	0	337	36	8	15	39	1.78
10174556--10174753	21	8.8	22	82	9	206	36	9	17	36	1.82
10175227--10175411	41	4.6	40	74	2	147	22	13	21	42	1.87
10175298--10175382	39	2.2	39	86	0	116	23	9	21	45	1.80
10175648--10175692	3	15.3	3	95	4	83	31	0	0	68	0.89
10176526--10176579	17	2.8	20	72	16	51	64	0	9	25	1.23
10176938--10177034	51	1.9	51	80	4	115	51	10	13	24	1.72
10178175--10178213	20	2.0	20	84	0	51	23	10	5	61	1.48
10179003--10179243	124	1.9	124	83	1	313	36	15	10	37	1.82
10179055--10179255	62	3.2	62	76	8	219	36	16	10	35	1.84
10179894--10179923	14	2.1	14	93	0	51	43	0	3	53	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10183399--10183425	14	1.9	14	100	0	54	0	14	3	81	0.82
10184654--10184714	22	2.7	22	80	9	70	6	14	0	78	0.94
10189857--10189934	41	1.9	42	86	5	115	26	2	2	67	1.16
10189907--10189950	12	3.8	12	80	14	56	25	0	0	75	0.81
10192074--10192146	12	6.5	11	83	14	64	31	1	1	65	1.09
10192104--10192146	6	7.3	6	85	15	63	32	2	0	65	1.06
10195891--10196256	145	2.5	141	79	6	358	36	17	12	33	1.87
10197745--10197835	19	4.8	19	75	15	89	41	37	0	20	1.53
10197841--10197969	62	2.1	61	85	4	170	40	32	3	23	1.73
10198019--10198077	19	3.2	19	95	2	102	44	38	5	11	1.63
10197975--10198182	98	2.1	99	86	5	296	43	38	4	13	1.64
10198117--10198171	18	3.0	18	84	7	58	45	36	0	18	1.49
10198134--10198183	19	2.6	19	77	0	55	44	36	2	18	1.61
10198210--10198264	18	2.9	19	81	5	76	45	34	0	20	1.51
10198210--10198303	19	5.1	18	70	14	75	44	31	1	22	1.60
10198416--10198471	27	2.1	26	83	3	67	46	35	1	16	1.57
10198433--10198527	19	4.9	19	74	13	70	43	33	3	20	1.67
10198551--10198608	26	2.3	26	87	3	82	43	41	3	12	1.59
10198540--10198656	56	2.1	57	81	1	137	41	39	5	12	1.68
10198717--10198754	16	2.4	16	86	8	51	55	36	0	7	1.29
10198796--10198838	20	2.2	20	86	0	59	37	41	0	20	1.53
10201711--10201775	19	3.6	18	70	21	55	41	33	3	21	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10201876--10201938	18	3.7	18	75	18	71	46	39	1	12	1.52
10201835--10201963	32	4.2	31	88	4	165	44	37	1	16	1.57
10201996--10202035	11	3.4	12	87	12	57	50	40	0	10	1.36
10202129--10202174	21	2.2	21	88	7	67	50	32	4	13	1.61
10204151--10204272	51	2.3	53	87	2	176	45	4	1	48	1.34
10207996--10208364	186	2.0	186	95	0	657	37	8	15	38	1.77
10211256--10211307	22	2.4	22	86	0	68	7	25	9	57	1.57
10212305--10212340	13	2.8	13	91	0	54	27	0	33	38	1.57
10212348--10212458	47	2.4	47	96	0	204	28	7	27	36	1.83
10212505--10212671	75	2.2	73	81	8	185	27	14	22	34	1.94
10212641--10212743	52	2.0	52	88	5	156	29	8	28	33	1.87
10217028--10217380	104	3.4	104	84	1	429	27	15	17	39	1.89
10217028--10217380	52	6.8	52	77	6	327	27	15	17	39	1.89
10217467--10217566	52	1.9	52	86	8	141	27	18	17	38	1.92
10219667--10219709	13	3.2	13	83	6	50	0	4	16	79	0.90
10219930--10219963	15	2.2	16	89	5	52	82	0	11	5	0.83
10220211--10220435	98	2.3	97	89	1	342	41	18	12	27	1.86
10220211--10220435	49	4.6	49	83	5	285	41	18	12	27	1.86
10230915--10230945	5	6.2	5	96	0	53	0	0	16	83	0.64
10230898--10230945	15	3.0	15	87	9	60	6	0	14	79	0.92
10232528--10232570	18	2.4	18	80	7	52	16	2	9	72	1.21
10233866--10233890	13	1.9	13	100	0	50	16	8	36	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10235544--10235750	61	3.3	60	78	6	182	36	11	16	34	1.85
10235504--10235766	64	4.2	62	75	8	203	37	13	15	33	1.86
10241048--10241770	203	3.6	200	80	6	735	40	11	13	35	1.80
10243080--10243261	94	2.0	92	95	2	328	37	13	19	29	1.90
10246031--10247039	237	4.3	236	78	5	991	46	11	9	32	1.72
10246032--10247039	474	2.1	469	81	4	1134	46	11	9	32	1.72
10248198--10248249	3	17.3	3	87	0	77	36	0	32	30	1.58
10249109--10249150	19	2.1	21	86	8	61	50	2	7	40	1.43
10250949--10250978	4	7.2	4	96	3	51	0	3	23	73	0.98
10250976--10251013	18	2.1	18	90	0	58	18	2	7	71	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190