genome.fa.s223.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  189  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32963834--32963879	10	4.3	11	83	10	51	41	0	0	58	0.98
32963834--32963886	21	2.4	22	81	15	65	43	0	0	56	0.99
32965308--32965336	10	3.0	10	95	5	51	10	6	0	82	0.83
32965363--32965408	16	2.8	16	83	3	65	82	6	0	10	0.83
32966231--32966271	13	3.1	13	86	6	55	21	2	0	75	0.92
32966484--32966734	40	6.1	40	74	6	153	47	15	9	27	1.77
32966581--32966698	43	2.7	43	84	2	139	47	12	10	29	1.74
32966812--32966921	56	2.0	56	92	0	184	44	14	13	27	1.83
32971848--32971908	23	2.8	21	76	13	70	37	4	0	57	1.20
32975843--32975903	24	2.6	24	77	12	72	42	0	1	55	1.09
32976554--32976701	79	2.0	73	81	10	174	54	6	14	25	1.64
32976922--32976997	34	2.2	34	95	0	134	52	18	7	21	1.70
32979060--32979105	10	4.3	11	83	10	51	41	0	0	58	0.98
32979060--32979112	21	2.4	22	81	15	65	43	0	0	56	0.99
32980186--32980238	27	2.0	27	89	10	83	39	9	3	47	1.54
32980469--32980498	11	2.7	11	94	0	51	13	0	0	86	0.57
32980527--32980576	23	2.3	21	86	13	66	82	6	0	12	0.85
32980527--32980575	11	4.4	11	79	5	62	83	6	0	10	0.80
32980733--32981047	40	7.6	40	77	5	227	45	16	10	27	1.79
32980820--32981017	43	4.7	43	80	9	162	46	16	10	26	1.78
32980815--32981047	126	1.9	123	83	2	304	45	16	9	28	1.79
32988239--32988264	3	8.7	3	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32988402--32988457	23	2.6	21	78	13	69	35	5	0	58	1.21
32990305--32990365	24	2.6	22	78	12	68	55	1	0	42	1.09
32991251--32991380	66	2.0	66	98	0	251	27	33	6	32	1.82
32991391--32991416	13	2.0	13	100	0	52	46	7	7	38	1.61
32991746--32991784	20	2.0	20	85	10	53	56	5	2	35	1.35
32992722--32992784	20	3.0	20	69	13	56	57	0	4	38	1.20
32995968--32996584	340	1.8	340	84	5	852	33	14	17	34	1.91
32997709--32997753	23	2.0	23	82	8	56	60	2	6	31	1.35
32999312--32999365	21	2.6	20	74	8	54	51	0	7	40	1.30
33005537--33005899	152	2.4	152	99	0	708	31	16	15	36	1.90
33007643--33007743	27	3.7	27	71	5	85	26	16	10	45	1.81
33007654--33007763	56	2.0	56	92	0	184	28	12	13	45	1.80
33007841--33008008	40	4.1	40	73	10	142	27	9	13	48	1.74
33008226--33008265	16	2.3	16	87	12	53	77	0	2	20	0.88
33008225--33008272	21	2.2	22	85	10	64	79	0	2	18	0.84
33008224--33008268	17	2.5	20	75	20	53	75	0	2	22	0.91
33009086--33009137	16	3.2	15	76	15	50	13	0	7	78	0.94
33009413--33009466	26	2.1	26	86	6	74	40	7	9	42	1.65
33009654--33009693	20	2.1	19	85	4	53	72	0	0	27	0.85
33010544--33010589	10	4.3	11	83	10	51	58	0	0	41	0.98
33010537--33010589	21	2.4	22	81	15	65	56	0	0	43	0.99
33013786--33013846	24	2.6	22	78	12	68	55	1	0	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33015155--33015193	20	2.0	20	85	10	53	56	5	2	35	1.35
33015263--33015324	31	2.0	30	81	9	72	43	4	1	50	1.33
33016934--33016965	2	16.0	2	93	0	55	50	3	0	46	1.17
33017787--33017816	2	15.0	2	100	0	60	50	0	50	0	1.00
33018573--33018651	22	3.5	21	77	10	68	34	5	2	58	1.34
33020011--33020047	2	18.5	2	100	0	74	51	0	48	0	1.00
33020972--33021018	22	2.1	22	84	4	58	42	0	0	57	0.98
33025562--33025779	33	6.5	33	71	18	116	53	1	1	43	1.20
33025562--33025789	23	10.4	22	70	18	131	54	1	1	42	1.19
33025562--33025788	67	3.5	66	77	15	215	54	1	1	42	1.19
33025797--33025830	16	2.2	16	89	5	52	32	0	11	55	1.36
33025848--33025912	26	2.6	25	87	4	94	50	1	0	47	1.10
33028092--33028213	63	2.0	61	81	10	142	39	5	35	19	1.76
33029904--33029975	35	2.1	35	89	0	108	20	13	18	47	1.82
33032574--33032636	26	2.4	26	78	5	65	19	23	22	34	1.96
33032773--33032822	3	16.7	3	100	0	100	32	0	0	68	0.90
33044566--33044663	32	3.1	32	72	8	101	22	19	11	46	1.81
33044524--33044663	63	2.2	63	87	2	201	21	20	11	46	1.82
33044587--33045109	88	5.9	89	81	4	540	20	22	14	43	1.87
33044587--33045087	177	2.8	176	83	4	600	19	22	14	43	1.86
33044586--33045340	265	2.9	252	81	6	853	19	21	14	43	1.87
33045110--33045567	89	5.0	89	76	8	317	19	20	15	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33044861--33045340	250	1.9	249	85	3	653	19	21	15	44	1.87
33045340--33045390	26	2.0	26	88	0	75	19	19	21	39	1.93
33045206--33045579	191	2.0	191	86	0	532	21	21	14	43	1.88
33045527--33045591	26	2.5	26	82	5	87	18	20	18	43	1.89
33046970--33046994	13	1.9	13	100	0	50	20	0	16	64	1.30
33047384--33047415	13	2.6	12	95	5	55	90	0	9	0	0.45
33049668--33050296	331	1.9	332	89	5	978	40	18	13	27	1.89
33052017--33052050	16	2.3	15	90	10	52	17	17	29	35	1.93
33052747--33052776	11	2.7	11	94	0	51	70	0	0	30	0.88
33053346--33053376	14	2.2	14	94	0	53	48	12	0	38	1.42
33053527--33053564	20	1.9	20	94	0	67	39	7	18	34	1.80
33053642--33053702	29	2.2	27	85	5	77	52	3	0	44	1.17
33054044--33054068	7	3.6	7	100	0	50	16	0	0	84	0.63
33054442--33054502	11	5.5	11	75	17	56	37	0	0	62	0.96
33054462--33054502	21	2.0	21	90	0	64	36	0	0	63	0.95
33054434--33054500	32	2.1	32	81	15	77	37	0	0	62	0.95
33054510--33054551	19	2.2	19	100	0	84	26	30	14	28	1.95
33055173--33055239	23	3.1	23	78	16	63	67	0	1	31	1.00
33056855--33056908	22	2.5	20	82	11	54	62	9	5	22	1.45
33058197--33058863	341	1.9	344	87	4	965	37	19	13	28	1.90
33062132--33062176	21	2.3	19	84	7	54	53	0	2	44	1.13
33062557--33062595	20	2.0	20	85	10	53	28	2	0	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33063687--33063749	25	2.5	26	82	10	76	42	4	1	50	1.32
33063703--33063755	26	2.1	24	82	6	61	45	3	1	49	1.31
33071828--33071865	2	19.0	2	100	0	76	50	0	50	0	1.00
33072612--33072687	22	3.4	21	78	10	62	34	3	3	57	1.35
33074986--33075034	23	2.0	25	88	7	75	48	0	0	51	1.00
33075695--33075842	79	2.0	73	81	10	174	54	6	14	25	1.64
33076063--33076138	34	2.2	34	90	0	125	52	17	7	22	1.70
33079651--33079707	26	2.2	26	81	6	62	47	10	0	42	1.38
33088686--33088718	15	2.2	15	89	10	50	33	12	30	24	1.91
33088770--33088891	63	2.0	61	81	10	142	39	5	35	19	1.76
33090796--33090830	17	1.9	19	88	11	56	40	5	17	37	1.73
33091579--33091607	6	4.8	6	100	0	58	0	68	0	31	0.89
33092892--33092962	3	23.0	3	87	11	99	29	2	1	66	1.15
33093061--33093107	19	2.5	19	96	0	85	40	14	6	38	1.72
33093093--33093291	58	3.4	57	77	8	195	46	6	8	39	1.58
33093107--33093291	59	3.2	58	78	4	201	48	5	8	37	1.57
33093375--33093414	15	2.6	15	80	4	53	10	5	0	85	0.75
33095327--33095362	18	2.0	18	88	0	54	41	8	36	13	1.75
33097484--33097961	60	8.0	59	82	6	498	44	7	12	35	1.70
33097484--33097961	121	4.0	118	81	7	536	44	7	12	35	1.70
33097996--33098020	13	1.9	13	100	0	50	16	0	12	72	1.13
33101153--33101217	8	7.9	8	79	5	58	81	0	15	3	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33101151--33101185	13	2.8	13	91	4	54	91	0	8	0	0.42
33101152--33101189	9	4.3	9	90	6	60	89	0	10	0	0.49
33102425--33102842	42	10.1	41	91	4	655	22	16	22	37	1.93
33102425--33102842	125	3.4	123	91	5	655	22	16	22	37	1.93
33102847--33102909	1	63.0	1	77	0	54	87	9	0	3	0.65
33102848--33102909	6	10.7	6	81	14	60	87	9	0	3	0.66
33102848--33102909	23	2.6	23	84	5	79	87	9	0	3	0.66
33102855--33102908	23	2.3	23	93	0	90	87	11	0	1	0.63
33103428--33103463	18	2.0	18	88	0	54	41	8	36	13	1.75
33105594--33105882	61	4.9	58	84	5	364	45	7	13	33	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190