genome.fa.s223.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  58  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9569570--9569634	29	2.3	27	79	10	69	83	7	7	1	0.88
9569660--9569695	19	1.9	18	88	5	54	80	0	8	11	0.90
9569856--9570045	37	5.2	37	76	9	149	36	21	7	34	1.82
9574004--9574557	144	3.8	144	80	5	541	41	13	13	31	1.83
9575132--9575208	35	2.2	36	90	2	129	51	10	16	20	1.73
9575238--9575320	36	2.3	35	81	6	96	53	15	15	15	1.74
9575080--9575424	109	3.2	108	80	5	340	53	15	14	16	1.74
9575470--9575581	22	5.2	22	74	8	104	18	21	25	34	1.96
9575847--9575892	21	2.2	21	92	0	74	39	13	21	26	1.90
9575986--9576072	41	2.1	41	80	0	93	37	14	13	33	1.86
9576140--9576348	34	6.3	33	72	8	147	26	15	22	36	1.93
9576264--9576351	33	2.8	31	77	6	95	28	18	22	30	1.97
9577203--9577255	21	2.5	20	74	14	54	7	16	0	75	1.02
9578527--9578588	28	2.2	28	83	10	83	8	4	6	80	1.01
9580211--9580246	16	2.2	16	90	0	54	55	0	22	22	1.44
9582655--9582689	16	2.2	16	94	0	61	54	11	2	31	1.51
9584699--9585079	126	3.0	126	94	0	654	37	18	14	28	1.91
9594473--9594503	2	15.5	2	93	0	53	51	3	0	45	1.17
9602255--9602289	18	1.9	18	88	11	54	71	14	11	2	1.25
9602962--9603020	29	2.1	28	81	9	66	32	0	5	62	1.17
9605554--9605593	14	2.9	14	92	0	62	42	0	22	35	1.54
9630485--9630509	11	2.3	11	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9632341--9632390	18	2.8	17	84	6	55	54	2	0	44	1.11
9636599--9636641	17	2.5	17	88	0	59	34	0	4	60	1.17
9636783--9636831	25	1.9	26	88	12	75	44	0	4	51	1.20
9641508--9641615	11	9.2	11	68	25	53	73	1	6	18	1.14
9641522--9641615	19	5.2	18	74	22	72	73	2	6	18	1.15
9641528--9641615	24	3.6	25	76	15	69	73	2	5	18	1.13
9641570--9641614	23	1.9	24	86	13	67	73	0	6	20	1.05
9641547--9641626	30	2.6	31	81	13	87	76	1	6	16	1.05
9641940--9641980	19	2.1	19	86	4	55	53	26	0	19	1.45
9642447--9642544	3	33.3	3	77	8	103	62	2	3	32	1.22
9642451--9642544	38	2.5	39	82	5	120	61	2	3	32	1.23
9642448--9642634	6	34.0	5	71	19	83	56	4	3	35	1.39
9642560--9642656	21	4.3	21	73	15	61	47	9	4	39	1.55
9654897--9654928	15	2.0	17	88	11	50	71	0	6	21	1.07
9655787--9655830	12	3.7	11	85	11	52	75	0	0	25	0.81
9655802--9655975	3	58.3	3	68	16	67	55	2	6	35	1.39
9655846--9655976	5	24.2	5	69	21	61	54	3	5	37	1.39
9663276--9663318	21	1.9	23	86	13	63	48	2	0	48	1.14
9664359--9664389	6	5.0	6	96	4	53	64	0	0	35	0.94
9664355--9664389	12	2.8	13	91	8	63	62	0	0	37	0.95
9664507--9664606	29	3.5	29	78	8	107	30	8	7	55	1.56
9664708--9664766	26	2.3	25	82	8	66	37	1	1	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9665914--9665956	15	2.8	16	92	3	70	37	6	9	46	1.63
9668952--9669000	25	2.0	25	91	0	80	44	20	10	24	1.82
9679475--9679499	13	1.9	13	100	0	50	28	0	8	64	1.22
9685443--9685516	24	3.2	24	68	14	66	35	10	12	41	1.77
9685443--9685541	45	2.2	45	87	3	137	34	10	11	44	1.74
9686292--9686325	15	2.3	15	90	5	52	35	5	23	35	1.79
9686381--9686500	62	1.9	62	88	3	179	34	14	20	30	1.92
9686616--9686871	49	5.2	49	76	10	245	28	10	15	45	1.79
9686615--9686887	146	1.9	146	80	6	329	28	10	15	45	1.80
9704556--9704597	22	1.9	22	85	9	59	14	0	23	61	1.32
9707807--9708618	429	1.9	437	84	3	1111	38	10	13	37	1.79
9711256--9711286	14	2.2	14	100	0	62	25	0	0	74	0.82
9712407--9712435	14	2.1	14	93	6	51	65	0	0	34	0.93
9724640--9724805	29	5.5	28	74	12	116	18	3	32	45	1.65
9724640--9724736	29	3.4	28	85	2	122	17	3	31	47	1.63
9724726--9724794	36	1.9	36	88	2	104	15	2	31	49	1.60
9724924--9724974	3	16.3	3	88	8	75	35	0	1	62	1.06
9725192--9725299	36	3.0	36	81	0	126	48	23	17	11	1.79
9725442--9725610	38	4.5	38	85	3	119	49	18	20	11	1.78
9725442--9725738	75	4.0	76	76	7	232	48	18	19	12	1.80
9725468--9725756	37	7.7	37	75	8	230	48	17	20	13	1.80
9725788--9725835	22	2.2	22	84	0	60	31	10	25	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9725833--9726365	127	4.2	126	85	1	663	36	15	15	32	1.89
9726241--9726576	105	3.2	103	82	6	383	36	16	13	33	1.88
9726914--9727216	33	9.4	33	76	7	120	33	15	21	29	1.94
9726998--9727284	131	2.2	131	84	5	357	32	15	21	30	1.94
9726998--9727284	66	4.4	66	79	5	278	32	15	21	30	1.94
9727100--9727282	99	1.9	98	83	5	244	33	14	21	30	1.93
9727038--9727281	33	7.5	32	77	8	174	31	14	22	31	1.93
9727456--9727550	3	32.3	3	86	6	61	22	0	10	67	1.21
9728497--9728679	49	3.8	48	80	3	188	31	10	18	39	1.85
9730881--9731277	145	2.7	144	81	6	469	43	13	14	28	1.83
9731857--9732084	36	6.4	35	71	13	135	55	11	14	18	1.69
9732029--9732203	72	2.5	72	76	4	158	53	13	16	17	1.73
9732054--9732374	107	3.0	107	81	4	299	53	15	15	15	1.73
9732143--9732404	107	2.5	107	83	1	285	54	16	15	14	1.72
9732391--9732542	36	4.3	35	78	5	139	51	15	17	15	1.77
9732420--9732542	34	3.5	35	78	6	124	50	16	18	14	1.78
9733539--9733667	41	3.2	41	79	7	149	17	15	12	55	1.70
9742528--9743156	58	10.7	59	83	5	769	37	12	6	44	1.67
9742528--9743157	119	5.3	118	87	3	828	37	12	6	44	1.67
9742526--9743157	177	3.6	175	83	6	783	37	12	6	44	1.67
9744493--9744652	80	2.0	79	87	1	230	33	16	23	26	1.96
9745333--9745371	16	2.4	16	86	0	51	41	25	2	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9745341--9745372	16	2.0	16	93	0	55	43	21	0	34	1.53
9748512--9748592	28	2.9	29	78	9	96	34	17	9	38	1.83
9750376--9750577	104	1.9	105	93	1	352	33	16	12	37	1.87
9750555--9750584	8	3.8	8	90	0	51	3	0	6	90	0.56
9750555--9750590	16	2.2	16	95	0	63	8	0	5	86	0.72
9750602--9751089	41	11.7	41	83	6	545	38	20	15	25	1.92
9750750--9750882	48	2.9	48	80	13	165	36	19	15	28	1.93
9751431--9751514	43	2.0	43	81	6	100	38	21	11	28	1.89
9751646--9751704	22	2.7	21	81	5	64	33	18	8	38	1.81
9752875--9752924	15	3.3	15	78	18	50	6	18	0	76	0.99
9753368--9753889	270	1.9	270	94	0	929	37	15	13	32	1.88
9757134--9757402	117	2.3	116	85	5	371	37	13	6	42	1.70
9757366--9757443	41	1.9	41	91	0	129	39	14	8	37	1.77
9762971--9763005	17	2.0	18	88	5	54	62	20	2	14	1.43
9764455--9764503	20	2.5	19	83	3	62	28	12	10	48	1.73
9765485--9765511	4	6.8	4	100	0	54	22	0	0	77	0.76
9767640--9767682	23	1.9	22	85	4	59	76	2	4	16	1.05
9767848--9768255	69	5.8	70	74	7	301	30	14	15	39	1.87
9768206--9768354	64	2.3	65	78	5	142	32	15	17	34	1.91
9768707--9768779	35	2.1	35	90	5	114	26	19	17	36	1.94
9773527--9773594	35	2.0	34	91	5	111	54	1	7	36	1.37
9775429--9775470	22	1.9	22	85	0	57	14	11	9	64	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9775826--9775857	16	2.0	16	93	0	55	18	0	3	78	0.89
9775814--9775872	23	2.5	24	81	13	70	20	3	3	72	1.13
9776096--9776134	18	2.2	18	90	0	60	41	7	38	12	1.72
9777883--9778456	59	9.6	57	80	10	607	45	5	12	36	1.66
9777887--9778457	120	4.8	120	90	3	800	45	6	12	36	1.66
9782345--9782384	17	2.4	16	92	8	71	85	0	15	0	0.61
9783628--9783798	41	4.1	41	89	1	252	23	16	24	35	1.95
9783628--9783798	83	2.1	82	88	1	252	23	16	24	35	1.95
9783806--9783836	8	3.9	8	95	0	53	90	6	0	3	0.55
9783915--9783957	15	2.6	17	89	10	63	86	6	6	0	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190