genome.fa.s223.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  123  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19448976--19449026	17	3.3	15	76	15	59	68	7	0	23	1.15
19448968--19449027	31	1.9	31	90	6	95	68	6	0	25	1.14
19450073--19450200	64	2.0	64	89	0	193	16	14	21	46	1.83
19450710--19450738	3	9.7	3	100	0	58	34	0	31	34	1.58
19450753--19450832	3	26.7	3	97	0	151	66	0	1	32	1.00
19451208--19451273	13	5.2	13	73	8	55	53	18	4	24	1.63
19451200--19451286	27	3.4	26	87	6	124	52	20	3	22	1.61
19451513--19451552	15	2.6	16	84	4	55	75	2	0	22	0.93
19455694--19455768	39	1.9	39	83	0	96	22	29	12	36	1.90
19456646--19456699	27	2.0	28	82	10	67	40	38	1	18	1.61
19462429--19462469	17	2.4	17	100	0	82	51	9	24	14	1.72
19462636--19462690	24	2.2	25	96	3	103	72	9	3	14	1.23
19462636--19462702	24	2.8	24	90	6	91	74	7	5	11	1.20
19463566--19463664	51	1.9	51	81	0	117	22	16	11	50	1.76
19463624--19463895	35	7.7	35	73	9	128	17	16	15	50	1.79
19463615--19463895	70	4.0	70	75	6	237	17	16	15	50	1.79
19464046--19464126	36	2.2	36	84	0	99	12	11	13	62	1.54
19464132--19464164	4	8.8	4	87	12	52	75	24	0	0	0.80
19464127--19464166	14	2.9	14	85	7	55	77	22	0	0	0.77
19464127--19464164	18	2.1	18	95	0	67	76	23	0	0	0.79
19464426--19464599	3	58.3	3	67	22	59	65	2	1	31	1.12
19464426--19464571	41	3.6	41	71	17	110	66	1	0	31	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19464506--19464610	10	9.1	11	69	25	58	66	2	0	29	1.12
19464426--19464610	7	26.6	7	76	14	68	65	2	1	30	1.11
19465356--19465486	65	2.0	66	85	4	176	17	10	16	54	1.69
19465748--19465803	28	2.0	29	93	6	98	57	0	0	42	0.99
19466214--19466274	14	4.4	14	77	4	70	55	18	1	24	1.51
19466217--19466273	27	2.1	27	83	0	69	56	17	1	24	1.51
19469976--19470149	19	9.1	19	74	3	143	18	2	39	40	1.63
19469979--19470149	57	3.0	56	75	7	164	18	2	39	40	1.63
19472541--19473002	49	9.5	47	76	12	375	45	12	12	30	1.79
19472541--19473002	99	4.8	96	79	6	459	45	12	12	30	1.79
19473144--19473191	23	2.1	23	100	0	96	33	16	4	45	1.67
19480257--19480295	10	3.9	10	80	12	53	25	0	2	71	0.98
19480254--19480295	20	2.0	20	90	4	66	26	0	2	71	0.98
19480466--19480508	19	2.3	19	95	0	77	18	11	27	41	1.85
19481174--19481199	3	8.7	3	100	0	52	30	0	0	69	0.89
19481254--19481279	2	13.0	2	100	0	52	50	0	0	50	1.00
19481725--19481755	1	31.0	1	100	0	62	100	0	0	0	0.00
19482684--19482747	2	32.5	2	80	3	76	45	0	0	54	0.99
19482835--19482949	7	15.0	7	76	16	79	22	0	0	75	0.91
19482894--19482954	8	7.6	8	87	9	81	16	0	1	81	0.76
19482839--19482949	6	18.7	6	75	11	61	22	0	0	75	0.91
19482835--19482949	30	3.8	31	73	15	98	22	0	0	75	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19483289--19483336	8	5.9	8	80	4	60	0	2	14	83	0.74
19483281--19483335	16	3.4	16	82	5	65	3	1	12	81	0.89
19483280--19483336	17	3.4	17	80	4	62	3	1	12	82	0.87
19483280--19483336	25	2.3	25	84	0	69	3	1	12	82	0.87
19483354--19483443	36	2.5	36	77	0	99	44	14	22	18	1.86
19483605--19483739	35	3.9	35	74	8	123	51	20	15	12	1.75
19483937--19484931	33	30.2	32	69	16	335	31	17	16	33	1.93
19483937--19484931	67	15.1	66	72	15	421	31	17	16	33	1.93
19483960--19484930	35	29.4	34	70	14	484	32	18	16	33	1.93
19484286--19484559	98	2.8	97	84	6	324	32	18	17	31	1.94
19484589--19484700	32	3.4	33	73	13	115	32	19	11	36	1.88
19484706--19484829	32	3.8	32	73	12	99	35	16	15	33	1.90
19485777--19485826	24	2.1	25	85	7	68	8	22	0	70	1.13
19492645--19492692	13	3.8	13	83	5	55	16	14	25	43	1.86
19494840--19494937	15	6.9	14	67	25	55	71	2	1	25	1.03
19494847--19494911	21	3.1	21	88	0	94	70	1	0	27	0.96
19494847--19494931	6	15.3	6	74	16	53	70	1	1	27	1.02
19494853--19494937	27	3.1	28	78	11	97	71	1	1	25	1.00
19495813--19495879	33	2.0	33	100	0	134	37	5	11	44	1.66
19498681--19498745	21	3.1	22	89	8	84	23	16	0	60	1.36
19498692--19498746	21	2.6	21	94	2	92	21	14	0	63	1.30
19498852--19499059	93	2.2	92	77	7	204	25	21	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19499023--19499155	61	2.2	62	83	6	164	21	24	16	37	1.93
19499076--19499407	62	5.4	62	74	11	225	25	19	18	36	1.94
19498958--19499413	31	14.7	31	72	9	198	24	20	18	36	1.95
19499622--19499679	27	2.2	26	84	6	71	3	15	3	77	1.04
19499640--19499669	14	2.1	15	93	6	53	3	13	0	83	0.77
19499640--19499679	12	3.4	12	79	6	55	5	12	0	82	0.82
19499640--19499690	23	2.2	23	86	6	68	5	15	0	78	0.93
19510358--19510753	203	2.0	202	82	7	480	41	11	11	35	1.77
19512948--19512980	15	2.2	15	100	0	66	45	12	6	36	1.66
19524646--19524683	3	12.7	3	100	0	76	31	0	0	68	0.90
19527042--19527072	2	15.5	2	100	0	62	48	0	51	0	1.00
19529941--19530000	23	2.6	23	89	0	84	40	11	5	43	1.63
19532581--19532619	20	2.0	20	84	0	51	43	2	0	53	1.14
19534260--19534305	5	8.6	5	92	2	56	2	19	6	71	1.18
19534278--19534309	6	5.5	6	96	3	57	0	18	12	68	1.20
19538239--19538280	2	21.0	2	100	0	84	50	0	50	0	1.00
19540038--19540068	15	2.1	15	100	0	62	35	25	19	19	1.95
19541797--19541848	12	4.2	12	75	4	50	28	0	3	67	1.08
19541855--19541893	19	2.1	19	100	0	78	43	0	0	56	0.99
19543763--19543800	17	2.2	18	85	4	51	36	2	0	60	1.11
19543796--19543850	23	2.2	26	84	15	73	30	5	3	60	1.37
19543811--19543856	23	2.0	23	83	8	58	39	4	4	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19543956--19544039	36	2.4	36	82	11	102	29	1	1	67	1.05
19543956--19544029	16	4.2	16	72	21	51	28	1	1	68	1.05
19544253--19544323	19	3.7	19	78	12	83	61	2	2	32	1.24
19544483--19544542	14	4.3	14	75	12	52	46	0	5	48	1.24
19544523--19544566	22	2.0	23	86	4	63	52	0	0	47	1.00
19544522--19544572	22	2.2	23	79	6	59	54	0	1	43	1.11
19544723--19544769	21	2.2	22	77	11	53	44	2	6	46	1.40
19549006--19549033	14	2.0	14	100	0	56	50	0	14	35	1.43
19549039--19549425	162	2.4	162	79	2	368	42	17	5	34	1.73
19549384--19549522	75	1.9	75	87	3	208	40	17	9	32	1.82
19553160--19553216	26	2.2	26	87	0	78	50	0	1	47	1.11
19553417--19553457	18	2.1	20	82	13	50	51	0	0	48	1.00
19554363--19554388	2	13.0	2	100	0	52	50	0	0	50	1.00
19554980--19555224	59	3.9	63	77	13	208	36	8	5	48	1.58
19555010--19555047	16	2.3	17	86	4	51	31	2	2	63	1.22
19554981--19555155	58	3.0	59	77	12	191	37	9	5	46	1.61
19555284--19555339	4	13.8	4	78	14	53	67	0	3	28	1.07
19556355--19556534	43	4.3	42	87	3	256	43	22	11	22	1.85
19556358--19556534	84	2.1	85	88	3	250	42	22	11	22	1.86
19571985--19572032	12	3.8	12	78	8	51	20	10	22	45	1.81
19572126--19572171	18	2.6	18	89	0	74	19	13	28	39	1.89
19572167--19572207	21	2.0	21	85	9	57	26	4	12	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19572469--19572508	3	13.3	3	100	0	80	32	0	0	67	0.91
19576194--19576300	35	3.1	35	79	5	110	47	14	17	19	1.82
19576444--19576623	65	2.7	64	78	10	175	28	15	17	38	1.90
19576669--19576742	33	2.2	33	90	0	112	28	10	17	43	1.83
19576744--19576981	100	2.3	101	84	2	307	28	15	20	36	1.93
19576699--19577313	35	18.4	34	69	11	229	28	14	20	37	1.92
19576444--19577313	34	26.3	34	68	14	253	28	14	19	37	1.91
19579641--19579686	8	5.4	9	82	10	53	6	19	0	73	1.04
19579641--19579686	17	2.7	17	82	0	56	6	19	0	73	1.04
19586617--19586645	15	1.9	15	100	0	58	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190