genome.fa.s223.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  119  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18656011--18656053	20	2.1	21	91	4	70	51	37	0	11	1.39
18656038--18656072	13	2.7	13	86	0	52	48	37	2	11	1.54
18656024--18656110	19	4.6	18	73	13	59	47	35	1	16	1.54
18656243--18656297	27	2.0	26	83	13	67	25	16	7	50	1.70
18657067--18657230	7	24.7	7	71	17	57	43	37	0	18	1.51
18657085--18657218	20	6.8	20	73	14	107	43	39	0	17	1.49
18657094--18657225	13	10.5	13	71	18	75	43	39	0	17	1.49
18657086--18657221	40	3.4	40	78	10	129	44	38	0	17	1.49
18657120--18657230	46	2.4	47	86	5	147	43	37	0	18	1.51
18657108--18657230	47	2.5	50	75	18	123	43	37	0	19	1.51
18657687--18657737	15	3.2	16	72	8	50	29	0	7	62	1.23
18658263--18658310	9	5.3	9	82	7	62	72	0	16	10	1.10
18658263--18658317	26	2.1	26	93	0	92	70	0	18	10	1.15
18658262--18658302	17	2.4	17	87	0	64	73	0	17	9	1.09
18658346--18658470	25	5.0	25	82	1	151	31	11	8	49	1.67
18667293--18667351	30	1.9	31	86	3	84	44	13	15	27	1.84
18667283--18667615	31	10.9	30	73	8	188	39	15	19	26	1.91
18667325--18667548	122	1.8	123	83	4	301	37	12	20	28	1.90
18667285--18667573	153	1.9	154	80	7	347	38	14	20	26	1.90
18667434--18667617	93	2.0	91	84	2	242	38	17	20	23	1.93
18667594--18667757	80	2.0	80	95	0	292	32	11	12	42	1.79
18667701--18668138	46	9.3	46	77	10	302	29	12	13	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18667701--18668081	46	8.2	46	80	6	324	29	12	13	44	1.80
18668621--18669007	144	2.7	140	78	8	331	32	13	14	39	1.85
18671373--18671411	18	2.3	18	87	12	57	82	0	15	2	0.79
18672390--18672463	33	2.2	33	90	4	114	37	13	17	31	1.89
18680417--18680675	135	1.9	135	83	1	331	37	18	11	32	1.87
18681197--18681230	18	1.9	18	88	5	52	76	0	14	8	1.01
18681192--18681232	18	2.3	19	79	12	50	78	0	12	9	0.98
18681710--18681795	27	3.2	26	75	20	88	77	1	17	3	0.96
18681691--18681796	10	10.7	10	69	5	63	77	0	18	2	0.95
18681708--18681796	30	2.9	30	77	11	90	77	1	17	3	0.97
18681691--18681796	20	5.3	20	70	7	74	77	0	18	2	0.95
18681717--18681784	24	2.8	23	79	20	59	77	1	17	2	0.96
18683587--18683704	35	3.3	35	73	13	107	33	16	9	39	1.81
18684500--18684657	48	3.2	49	82	6	160	31	13	12	42	1.81
18686995--18687054	29	2.1	28	90	9	95	46	26	3	23	1.68
18691311--18691340	15	2.0	15	93	0	51	53	6	10	30	1.60
18691637--18691728	48	1.9	47	84	6	123	21	11	18	47	1.80
18693190--18693315	57	2.2	57	84	2	173	47	10	3	38	1.56
18698253--18698305	25	2.1	26	80	16	67	60	0	7	32	1.25
18698270--18698393	28	4.6	27	74	19	84	73	2	4	19	1.13
18698325--18698401	24	3.2	24	78	12	77	79	2	6	11	1.02
18699484--18699814	84	3.9	84	78	7	276	35	18	14	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18699552--18699888	84	4.1	81	77	13	215	36	17	15	30	1.91
18711901--18711958	23	2.5	24	83	10	68	39	5	3	51	1.41
18712033--18712085	16	3.5	15	76	14	56	77	0	13	9	0.99
18712042--18712105	30	2.2	29	86	8	85	75	0	15	9	1.05
18712191--18712264	18	4.1	17	74	10	60	50	2	4	43	1.35
18712237--18712274	18	2.0	20	85	10	53	50	5	5	39	1.48
18712295--18712349	20	2.8	20	79	15	62	74	1	23	0	0.91
18715857--18715950	13	7.1	13	70	24	54	31	3	1	63	1.17
18715911--18715991	43	1.9	44	82	12	107	29	4	1	64	1.22
18715969--18716029	26	2.3	26	79	20	74	34	4	4	55	1.43
18716043--18716090	14	3.3	15	82	11	55	25	0	2	72	0.95
18716062--18716092	16	1.9	16	100	0	62	19	0	3	77	0.90
18716960--18717032	21	3.3	21	80	16	85	15	10	0	73	1.08
18716946--18717027	39	2.2	37	84	8	103	15	8	0	75	1.03
18716946--18716996	6	8.0	6	79	12	57	15	5	0	78	0.93
18717054--18717322	119	2.3	119	93	1	459	40	7	15	36	1.75
18717046--18717322	59	4.7	57	82	11	319	42	7	14	35	1.74
18727490--18727536	8	5.9	8	92	7	78	78	0	12	8	0.95
18727490--18727537	25	2.0	24	95	4	87	79	0	12	8	0.94
18727487--18727539	8	6.6	8	82	8	63	79	0	13	7	0.93
18727491--18727529	17	2.3	17	100	0	78	79	0	10	10	0.94
18728535--18728874	41	8.3	41	88	4	451	23	15	22	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18728986--18729182	45	4.4	44	79	8	202	24	16	20	38	1.92
18729430--18729476	20	2.2	20	85	7	58	21	6	2	70	1.20
18729506--18729566	26	2.3	26	76	20	65	36	4	3	55	1.38
18729604--18729647	10	4.8	9	83	10	54	13	2	0	84	0.73
18729602--18729646	8	5.1	8	82	17	54	15	2	0	82	0.77
18729586--18729649	27	2.3	29	86	10	89	20	1	0	78	0.84
18730522--18730562	12	3.7	12	78	15	52	14	7	0	78	0.96
18730617--18730771	58	2.7	59	89	4	244	43	7	14	34	1.74
18733433--18733542	3	34.7	3	71	17	55	30	4	0	64	1.19
18733452--18733520	17	4.1	17	75	0	66	27	4	1	66	1.19
18733433--18733521	23	4.0	23	73	22	66	29	3	1	66	1.15
18733410--18733529	61	2.0	61	83	9	156	28	3	1	66	1.17
18733547--18733607	26	2.3	26	76	20	65	36	4	3	55	1.38
18733635--18733691	27	2.1	29	83	9	75	19	1	1	77	0.95
18734563--18734632	6	11.7	6	79	11	72	17	5	0	77	0.96
18734560--18734633	29	2.5	30	86	10	107	17	6	0	75	1.01
18734652--18734866	58	3.7	57	78	12	247	42	6	14	36	1.73
18737590--18737627	18	2.1	19	85	5	51	21	2	7	68	1.28
18738376--18738414	12	3.2	12	92	0	60	69	2	0	28	1.02
18741090--18741179	6	14.2	6	74	14	74	78	1	18	1	0.87
18741081--18741159	32	2.5	32	83	8	99	77	1	18	2	0.96
18741089--18741180	44	2.0	46	83	10	118	77	1	20	1	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18741116--18741179	25	2.8	21	79	11	65	81	0	17	1	0.77
18744348--18744392	11	3.9	12	88	8	67	75	0	24	0	0.80
18744349--18744386	17	2.2	17	90	0	58	73	0	26	0	0.83
18745552--18745609	26	2.3	24	80	11	62	72	1	18	6	1.16
18745562--18745663	20	5.2	19	71	17	66	74	1	19	3	1.07
18745556--18745639	36	2.4	36	78	11	86	75	2	17	4	1.09
18745590--18745662	27	2.7	28	76	18	75	76	1	19	2	0.98
18746415--18746454	20	2.0	20	85	5	53	32	10	22	35	1.87
18746417--18746646	113	2.0	114	94	0	399	35	18	14	31	1.91
18747822--18747867	14	3.4	13	85	8	56	80	0	17	2	0.81
18748078--18748736	33	20.4	31	71	11	209	33	16	18	30	1.94
18748120--18748300	100	1.8	100	81	2	229	33	16	17	32	1.93
18748072--18748512	64	6.8	64	75	9	286	33	16	18	31	1.93
18748533--18748604	32	2.2	33	87	2	101	36	20	16	26	1.94
18748745--18749301	46	12.5	46	74	12	337	32	11	12	43	1.79
18748923--18748991	30	2.3	30	92	0	111	27	7	15	49	1.71
18748832--18749083	122	2.1	122	83	2	308	30	10	13	44	1.78
18748877--18749037	76	2.1	76	96	0	295	29	9	14	46	1.76
18748787--18749123	168	2.0	167	82	4	410	31	11	13	43	1.80
18748953--18749301	137	2.5	135	83	5	425	31	11	13	44	1.79
18748957--18749301	91	3.8	91	81	5	349	31	11	12	44	1.78
18751975--18752018	22	2.0	23	86	4	63	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18756191--18756228	10	3.8	10	96	0	67	31	0	21	47	1.51
18759953--18759990	14	2.7	14	95	0	67	34	5	21	39	1.76
18763375--18763428	13	4.3	12	77	9	54	24	7	20	48	1.75
18763384--18763452	25	2.8	24	79	14	70	23	7	21	47	1.75
18763997--18764023	3	9.0	3	100	0	54	66	0	0	33	0.92
18766770--18766929	79	2.0	79	97	0	302	31	9	10	48	1.70
18769693--18769741	23	2.0	23	84	7	62	6	14	2	77	1.05
18770112--18770150	9	4.4	9	83	6	53	35	2	2	58	1.25
18771883--18771922	17	2.3	18	91	4	64	12	17	2	67	1.33
18777869--18777917	17	2.9	18	85	8	59	81	4	8	6	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190