genome.fa.s223.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  179  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30149254--30149283	15	2.0	15	93	0	51	63	3	0	33	1.11
30151174--30151216	19	2.3	19	88	8	61	58	0	0	41	0.98
30154690--30154739	18	2.8	17	76	8	55	28	2	18	52	1.56
30156794--30156872	36	2.2	35	82	6	88	56	2	2	37	1.26
30159493--30159561	15	4.7	14	72	13	59	23	0	1	75	0.89
30159493--30159566	14	5.1	14	75	16	71	22	0	1	75	0.88
30159496--30159547	16	3.2	16	74	15	52	21	0	1	76	0.87
30159492--30159561	30	2.4	29	82	2	86	22	0	1	75	0.88
30159496--30159565	16	4.6	16	68	20	51	22	0	1	75	0.88
30159493--30159581	45	2.0	45	82	12	112	23	0	3	73	0.99
30159683--30159731	19	2.5	19	83	3	62	26	4	2	67	1.19
30159682--30159756	9	8.0	9	74	12	62	24	4	2	69	1.19
30160564--30160601	4	9.5	4	100	0	76	47	0	0	52	1.00
30160640--30160732	5	18.6	5	73	19	61	12	4	2	80	0.95
30160644--30160702	25	2.4	25	88	8	86	10	3	1	84	0.80
30160646--30160702	8	7.0	8	84	11	80	10	1	1	85	0.73
30160661--30160737	38	2.1	38	83	11	99	14	5	1	79	0.97
30160746--30161309	58	9.7	58	80	10	550	42	5	13	37	1.69
30160755--30161309	232	2.4	228	86	6	742	41	5	13	38	1.69
30162170--30162204	12	2.9	12	100	0	70	34	0	31	34	1.58
30163325--30163356	17	1.9	16	93	6	55	81	0	0	18	0.70
30166080--30166131	20	2.6	20	81	0	59	48	1	3	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30169714--30169765	24	2.2	24	82	0	59	51	3	1	42	1.31
30170937--30170996	23	2.5	24	75	24	63	53	0	1	45	1.10
30171819--30171862	22	2.0	22	86	8	63	75	0	6	18	1.02
30172171--30172236	33	2.0	33	90	0	105	33	27	16	22	1.96
30175445--30175494	24	2.1	24	84	0	64	52	4	2	42	1.31
30188150--30188188	13	2.9	13	81	7	51	20	0	2	76	0.90
30189162--30189199	3	12.3	3	94	5	67	31	0	0	68	0.90
30189152--30189199	19	2.6	19	90	3	71	27	0	4	68	1.07
30189939--30189988	25	2.0	25	96	3	93	26	8	8	58	1.54
30192189--30192225	2	18.5	2	100	0	74	51	0	48	0	1.00
30193850--30193915	34	1.9	34	87	0	96	30	19	10	39	1.86
30194888--30194927	12	3.2	12	82	6	53	2	15	2	80	0.93
30197188--30197238	20	2.6	21	76	20	56	47	3	3	45	1.40
30197365--30197393	14	2.0	15	93	6	51	62	3	0	34	1.12
30200078--30200145	34	2.0	34	97	0	127	30	35	16	17	1.92
30206939--30206996	9	6.8	8	84	9	55	25	1	1	70	1.06
30206930--30206983	3	17.7	3	88	7	74	27	0	0	72	0.85
30207620--30207668	20	2.3	23	86	10	68	26	4	0	69	1.06
30207938--30207989	12	4.2	12	80	11	61	76	5	0	17	0.97
30207945--30207990	22	2.0	24	87	8	69	76	6	0	17	1.00
30207944--30207990	23	2.0	25	87	8	71	76	6	0	17	0.98
30224684--30224713	4	7.5	4	92	0	51	23	3	0	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30225381--30225420	11	3.5	11	86	10	53	27	2	0	70	1.01
30225705--30225753	19	2.5	20	81	15	57	77	6	0	16	0.96
30226222--30226263	21	1.9	23	85	9	61	21	0	4	73	1.01
30227722--30227803	2	40.5	2	90	2	119	54	0	43	1	1.07
30230690--30231616	310	3.0	309	92	1	1542	37	17	13	31	1.89
30238047--30238081	17	2.1	17	100	0	70	22	11	14	51	1.74
30242823--30243135	61	5.1	59	77	8	272	38	9	5	46	1.60
30242823--30243136	122	2.6	118	80	6	342	38	9	5	46	1.60
30244531--30244559	14	2.0	15	93	6	51	62	3	0	34	1.12
30247785--30247861	24	2.9	28	79	14	74	48	0	1	50	1.09
30249827--30249875	23	2.1	23	85	7	64	48	2	0	48	1.12
30250012--30250060	22	2.2	22	85	7	64	73	2	4	20	1.10
30250368--30250431	33	1.9	33	90	0	101	31	28	17	23	1.97
30254110--30254151	3	14.3	3	95	5	77	30	0	0	69	0.89
30255106--30255149	12	3.6	12	82	11	54	79	4	0	15	0.89
30257158--30257186	8	3.6	8	100	0	58	0	10	0	89	0.48
30271020--30271057	3	12.3	3	94	5	67	31	0	0	68	0.90
30271019--30271057	19	2.1	19	100	0	78	30	0	0	69	0.89
30271023--30271055	16	2.1	16	100	0	66	30	0	0	69	0.88
30273590--30273619	6	5.0	6	91	0	51	30	33	20	16	1.94
30278305--30278333	14	2.0	15	93	6	51	62	3	0	34	1.12
30288086--30288136	15	3.6	15	74	15	54	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30292726--30292750	9	2.8	9	100	0	50	20	0	0	80	0.72
30292759--30292802	19	2.2	20	96	4	81	9	9	9	72	1.28
30292743--30292803	20	2.9	21	85	11	81	13	8	8	70	1.33
30294986--30295021	20	1.9	20	88	11	58	0	16	2	80	0.83
30306827--30307431	64	9.3	63	73	10	263	38	13	11	37	1.80
30307009--30307145	67	2.0	67	83	2	168	43	10	10	35	1.72
30308703--30308731	14	2.0	15	93	6	51	62	3	0	34	1.12
30309103--30309179	34	2.4	31	77	12	82	32	12	15	38	1.86
30309114--30309207	35	2.7	35	83	1	118	38	12	12	36	1.82
30314380--30314419	21	1.9	21	90	10	64	42	25	5	27	1.75
30317024--30317327	124	2.5	122	73	7	267	35	10	13	39	1.80
30317163--30318336	186	6.2	184	83	5	1253	35	12	10	41	1.78
30317190--30318329	373	3.0	372	85	3	1419	35	12	10	41	1.77
30317170--30318242	559	1.9	559	84	3	1437	35	12	10	41	1.77
30317170--30318386	559	2.2	550	81	8	1280	35	12	10	41	1.77
30318886--30318953	12	5.5	12	80	13	84	17	7	32	42	1.77
30318888--30318963	25	3.0	25	94	0	125	14	7	34	43	1.74
30318917--30318973	25	2.3	25	87	0	78	15	10	33	40	1.82
30324325--30324354	2	15.0	2	92	0	51	46	3	0	50	1.18
30324764--30324822	28	2.0	30	80	6	68	38	1	3	55	1.26
30325250--30325291	19	2.3	19	88	12	61	59	0	0	40	0.97
30326176--30326208	10	3.3	10	100	0	66	9	57	0	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30326549--30326616	24	2.6	25	79	15	66	45	0	2	51	1.16
30333047--30333623	60	9.5	60	81	10	417	35	11	7	45	1.69
30333155--30333623	60	7.8	58	84	7	521	35	11	8	44	1.70
30333546--30333635	30	3.0	30	68	10	85	38	8	3	48	1.51
30333559--30333591	14	2.3	15	89	5	50	45	0	3	51	1.16
30334930--30335358	86	4.9	86	73	10	296	42	13	19	24	1.87
30335327--30335508	79	2.3	79	86	0	247	46	14	18	20	1.84
30336351--30336426	7	10.9	7	82	10	57	3	6	6	82	0.92
30336353--30336413	14	4.4	14	85	6	63	3	6	6	83	0.89
30336375--30336426	14	3.7	14	87	10	79	5	0	7	86	0.70
30336367--30336426	21	2.9	21	84	0	75	5	1	8	85	0.81
30336408--30336529	57	2.1	57	92	1	199	18	14	9	56	1.66
30336845--30336882	20	1.9	20	84	10	51	34	26	2	36	1.71
30341480--30341514	18	2.0	17	88	5	52	8	17	0	74	1.06
30343861--30343897	15	2.5	15	86	0	56	54	5	21	18	1.64
30347152--30347308	59	2.7	60	88	5	223	33	12	7	46	1.69
30347240--30347376	71	1.9	71	85	7	190	35	13	5	45	1.67
30347321--30348000	181	3.7	181	88	5	933	39	9	5	45	1.61
30347313--30348000	121	5.7	120	82	8	702	38	10	5	45	1.61
30347310--30348000	60	11.4	58	81	10	721	39	10	5	45	1.62
30348552--30348577	11	2.4	11	100	0	52	61	7	0	30	1.24
30351073--30351117	23	2.0	22	91	4	72	31	11	6	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30354890--30354953	6	10.3	6	80	11	51	78	1	1	18	0.92
30356138--30356179	21	2.0	21	86	9	59	47	7	4	40	1.52
30357052--30357100	17	2.9	17	82	14	50	36	0	2	61	1.08
30357057--30357100	16	2.6	17	89	7	63	34	0	2	63	1.07
30360085--30360109	12	2.1	12	100	0	50	52	8	32	8	1.60
30374200--30374255	29	2.0	28	89	3	85	51	3	1	42	1.29
30375498--30375534	17	2.2	17	90	0	56	37	2	5	54	1.38
30375507--30375546	16	2.4	17	91	4	64	37	0	5	57	1.21
30394640--30394681	2	21.0	2	100	0	84	50	0	0	50	1.00
30400401--30400527	66	1.9	66	100	0	254	37	7	14	41	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190