genome.fa.s223.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  107  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16720136--16720211	37	2.1	37	89	0	116	27	18	40	13	1.88
16720366--16720415	26	2.0	25	96	4	91	28	20	28	24	1.99
16720367--16720422	26	2.2	26	90	6	87	30	21	26	21	1.98
16723886--16723938	26	2.0	26	100	0	106	26	20	26	26	1.99
16724781--16724833	26	2.0	26	92	0	88	28	18	24	28	1.98
16725915--16725945	8	3.9	8	91	0	53	9	25	64	0	1.24
16727450--16727502	26	2.0	26	92	0	88	26	20	26	26	1.99
16727877--16727929	26	2.1	24	82	6	61	26	7	18	47	1.75
16728308--16728360	26	2.0	26	100	0	106	26	20	26	26	1.99
16730420--16730472	26	2.0	26	100	0	106	26	20	26	26	1.99
16731276--16731326	26	2.0	26	100	0	102	27	19	25	27	1.99
16732158--16732209	25	2.0	26	88	3	79	30	17	25	26	1.97
16733065--16733117	26	2.0	26	92	7	90	28	16	26	28	1.97
16729479--16739437	896	11.2	893	84	5	11938	25	23	24	25	2.00
16736642--16736694	26	2.0	26	96	0	97	26	18	26	28	1.98
16738406--16738459	26	2.1	26	100	0	108	25	20	27	25	1.99
16739308--16739360	26	2.0	26	85	0	70	30	20	22	26	1.98
16738656--16740168	735	2.1	731	87	2	2162	25	23	24	26	2.00
16740043--16740095	26	2.0	26	92	0	88	28	18	24	28	1.98
16740096--16740291	101	1.9	102	83	1	250	18	28	36	16	1.93
16741162--16741214	26	2.0	26	88	0	79	30	22	20	26	1.98
16742358--16742410	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16743230--16744741	717	2.1	721	88	3	2239	26	24	23	25	2.00
16745747--16745799	26	2.0	26	96	0	97	26	24	22	26	2.00
16746627--16746679	26	2.0	26	88	0	79	30	24	20	24	1.99
16743975--16748206	890	4.7	889	86	3	5554	26	24	23	25	2.00
16747530--16747581	26	2.0	26	88	0	77	28	23	19	28	1.98
16750637--16750692	26	2.2	26	96	0	103	26	17	25	30	1.97
16751539--16751591	26	2.0	26	92	0	88	28	18	24	28	1.98
16754172--16754224	26	2.0	26	88	0	79	28	22	20	28	1.99
16755073--16755123	26	2.0	26	100	0	102	27	19	27	25	1.99
16751712--16763930	903	13.7	900	82	7	12604	25	24	24	25	2.00
16756855--16756907	26	2.0	26	96	0	97	28	16	24	30	1.97
16757779--16757831	26	2.0	26	92	0	88	28	18	24	28	1.98
16760404--16760475	25	2.9	25	97	0	135	29	23	23	23	1.99
16761291--16761343	26	2.0	26	88	0	79	28	20	24	26	1.99
16763066--16763118	26	2.0	26	92	0	88	28	18	24	28	1.98
16764799--16764851	26	2.0	26	88	0	79	28	20	24	26	1.99
16765675--16765727	26	2.0	26	92	0	88	28	18	24	28	1.98
16766565--16766617	26	2.0	26	92	0	88	28	18	24	28	1.98
16770115--16770165	26	2.0	26	92	0	84	25	19	31	23	1.98
16771013--16771065	26	2.0	26	88	0	79	26	18	26	28	1.98
16773728--16773780	26	2.0	26	96	0	97	26	18	26	28	1.98
16763941--16775930	903	13.4	903	86	3	15252	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16776312--16776364	26	2.0	26	96	0	97	26	20	24	28	1.99
16778081--16778133	26	2.0	26	96	0	97	28	20	24	26	1.99
16777215--16779459	893	2.6	892	86	4	3014	25	23	24	26	2.00
16778946--16778998	26	2.0	26	92	0	88	28	20	22	28	1.99
16779052--16779866	407	2.0	404	85	3	1091	24	21	24	30	1.99
16780235--16780286	26	2.0	26	96	0	95	26	17	26	28	1.97
16781108--16781160	26	2.0	26	96	0	97	24	20	28	26	1.99
16779832--16781862	873	2.3	854	85	6	2570	26	23	23	25	2.00
16782757--16782809	26	2.0	26	100	0	106	26	16	30	26	1.97
16783667--16783719	26	2.0	26	89	7	81	30	20	22	26	1.98
16783650--16784063	185	2.2	184	81	5	478	21	28	28	22	1.99
16785758--16785810	26	2.0	26	88	0	79	28	13	24	33	1.93
16787145--16787197	26	2.0	26	85	0	70	26	18	24	30	1.98
16787329--16787381	26	2.0	26	96	0	97	28	16	24	30	1.97
16787122--16787564	184	2.4	185	85	1	568	24	25	26	23	2.00
16787514--16787592	26	3.0	26	92	3	133	26	16	25	31	1.96
16787329--16787750	211	2.0	211	85	1	578	23	24	28	24	2.00
16788428--16788480	26	2.0	26	88	0	79	28	16	24	30	1.97
16788314--16788658	185	1.9	183	82	1	438	23	25	29	22	1.99
16788613--16788691	26	3.0	25	89	7	113	29	17	26	26	1.98
16788428--16788810	211	1.8	211	85	3	538	22	25	30	21	1.99
16790240--16790292	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16792249--16792301	26	2.0	26	96	0	97	28	26	18	26	1.98
16792866--16794785	902	2.1	903	88	2	2874	25	25	24	24	2.00
16794648--16794700	26	2.0	26	96	0	97	30	24	16	28	1.97
16795443--16795493	26	2.0	26	92	0	84	31	23	19	25	1.98
16796344--16796396	26	2.0	26	88	0	79	32	26	16	24	1.97
16794873--16797231	901	2.6	899	87	2	3357	26	25	23	25	2.00
16797231--16830348	903	37.0	899	83	5	38354	25	24	24	25	2.00
16801645--16801700	26	2.2	26	90	0	85	26	23	19	30	1.98
16807013--16807065	26	2.0	26	100	0	106	26	26	20	26	1.99
16808796--16808848	26	2.0	26	92	0	88	26	22	20	30	1.98
16811302--16811680	158	2.4	158	88	0	562	18	30	28	22	1.98
16813394--16813446	26	2.0	26	92	7	90	30	26	16	26	1.97
16814737--16814788	26	2.0	26	88	0	77	51	15	11	21	1.74
16816519--16816570	26	2.0	26	88	0	77	51	15	11	21	1.74
16817855--16817907	26	2.0	26	92	7	90	26	26	18	28	1.98
16819626--16819678	26	2.0	26	92	0	88	28	24	18	28	1.98
16823176--16823226	26	2.0	26	88	0	75	31	23	13	31	1.93
16824068--16824118	26	2.0	26	92	0	84	29	21	19	29	1.98
16826684--16826733	26	1.9	26	87	0	73	28	22	18	32	1.97
16827575--16827627	26	2.0	26	100	0	106	26	26	20	26	1.99
16829344--16829394	26	2.0	26	100	0	102	23	27	19	29	1.98
16830252--16830304	26	2.0	26	88	0	79	30	22	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16833751--16833803	26	2.0	26	96	0	97	26	20	22	30	1.98
16833882--16833912	11	2.8	11	100	0	62	19	29	32	19	1.96
16834664--16834716	26	2.0	26	96	0	97	28	26	18	26	1.98
16836429--16836481	26	2.0	26	88	0	79	26	26	18	28	1.98
16837314--16837366	26	2.0	26	92	0	88	24	26	20	28	1.99
16839077--16839128	26	2.0	26	88	7	79	28	28	15	26	1.96
16838251--16844480	907	7.0	900	87	4	8410	25	24	24	25	2.00
16843522--16843574	26	2.0	26	100	0	106	26	26	20	26	1.99
16838251--16844480	906	7.0	891	86	4	8212	25	24	24	25	2.00
16844428--16844485	26	2.2	26	96	0	107	27	24	18	29	1.98
16844588--16844638	26	2.0	26	84	7	68	29	17	25	27	1.98
16845488--16845540	26	2.0	26	96	0	97	26	20	24	28	1.99
16847989--16848038	25	2.0	26	92	4	84	28	20	24	28	1.99
16848914--16848966	26	2.0	26	92	0	88	28	18	24	28	1.98
16847350--16850579	881	3.6	859	81	9	3501	25	23	24	26	2.00
16847114--16850685	898	4.0	899	81	8	4255	25	24	24	25	2.00
16851983--16852032	26	1.9	26	91	0	82	28	20	30	22	1.98
16853475--16853527	26	2.0	26	100	0	106	26	20	26	26	1.99
16853627--16855151	723	2.1	716	83	5	1941	26	24	23	26	2.00
16857753--16857805	26	2.0	26	92	0	88	28	15	26	30	1.96
16854343--16859140	871	5.3	895	84	5	5787	25	24	24	25	2.00
16858651--16858703	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16858849--16859474	331	1.9	327	90	1	1000	24	22	24	27	2.00
16859870--16859922	26	2.0	26	88	0	79	24	16	28	30	1.97
16860759--16860811	26	2.0	26	96	0	97	26	22	24	26	2.00
16861650--16861702	26	2.0	26	96	0	97	26	15	26	32	1.95
16859817--16864153	887	4.9	886	85	3	5554	25	23	24	26	2.00
16869060--16869102	21	2.0	21	100	0	86	13	37	27	20	1.91
16869062--16869108	21	2.2	21	92	0	76	14	40	25	19	1.90
16870267--16870319	26	2.0	26	100	0	106	26	20	26	26	1.99
16871156--16871526	185	2.0	185	88	1	546	21	28	29	21	1.98
16872206--16872258	26	2.0	26	88	0	79	24	18	26	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190