genome.fa.s223.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  75  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12247156--12247208	26	2.0	26	96	0	97	28	26	18	26	1.98
12244485--12248797	904	4.8	894	83	5	5434	26	24	23	25	2.00
12250129--12250483	159	2.2	158	84	2	435	21	27	29	22	1.99
12250454--12250506	26	2.0	26	100	0	106	26	26	18	28	1.98
12250280--12254700	877	5.0	893	81	9	4890	26	24	23	25	2.00
12253124--12253192	26	2.7	26	97	0	129	27	26	18	27	1.98
12251361--12253476	895	2.3	892	84	6	2690	25	25	24	25	2.00
12256106--12256158	26	2.0	26	88	0	79	28	22	20	28	1.99
12256836--12256888	26	2.0	26	96	0	97	28	26	18	26	1.98
12257740--12257792	26	2.0	26	96	0	97	28	26	18	26	1.98
12260313--12260370	26	2.3	25	79	5	73	31	22	17	29	1.96
12261215--12261264	25	2.0	26	96	4	93	32	28	10	30	1.89
12262099--12262151	26	2.0	26	96	0	97	28	26	18	26	1.98
12259445--12263945	895	5.0	893	85	3	5995	25	24	24	25	2.00
12263893--12263948	26	2.2	26	96	0	103	28	26	19	25	1.99
12266071--12266123	26	2.0	26	96	0	97	26	26	18	28	1.98
12266974--12267026	26	2.0	26	92	0	88	24	24	22	28	2.00
12268758--12268810	26	2.0	26	96	0	97	28	26	18	26	1.98
12264311--12272362	878	9.1	874	84	4	9522	25	24	24	25	2.00
12272137--12272491	159	2.2	158	85	0	458	21	28	29	21	1.98
12272462--12272514	26	2.0	26	96	0	97	28	26	16	28	1.97
12273364--12276965	900	4.0	902	83	7	4459	25	25	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12275132--12275200	26	2.7	26	97	0	129	27	26	18	27	1.98
12272277--12276965	900	5.2	875	81	8	4369	25	25	24	24	2.00
12277960--12278012	26	2.0	26	89	7	81	26	15	26	32	1.95
12279582--12279633	26	2.0	26	88	7	79	30	13	26	28	1.94
12280485--12280537	26	2.0	26	92	0	88	26	16	26	30	1.97
12283109--12283161	26	2.0	26	92	0	88	26	20	22	30	1.98
12282255--12289169	894	7.7	894	85	5	8173	25	24	24	25	2.00
12278066--12289169	869	12.5	890	85	5	12430	25	24	24	25	2.00
12287564--12287619	26	2.2	26	90	0	85	26	19	23	30	1.98
12288447--12288499	26	2.0	26	85	7	72	26	16	28	28	1.97
12290426--12290476	26	2.0	26	92	7	86	29	17	25	27	1.98
12291300--12291351	26	2.0	26	84	0	68	26	13	23	36	1.92
12292067--12292122	26	2.2	26	96	0	103	26	17	25	30	1.97
12292953--12293006	26	2.1	26	96	0	99	27	16	25	29	1.97
12294220--12294252	11	3.0	11	100	0	66	18	36	27	18	1.94
12295234--12295286	26	2.0	26	85	7	72	28	15	26	30	1.96
12293725--12296159	901	2.7	897	86	3	3330	25	23	24	26	2.00
12295482--12296837	675	2.0	677	96	0	2502	25	22	23	28	1.99
12296800--12296852	26	2.0	26	88	0	79	26	18	24	30	1.98
12297699--12297751	26	2.0	26	85	0	70	26	16	24	32	1.97
12296158--12300965	907	5.4	892	85	4	6115	25	24	24	26	2.00
12299486--12299538	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12300583--12301349	385	2.0	384	90	1	1205	26	18	23	31	1.97
12301672--12301723	26	2.0	26	96	0	95	26	17	26	28	1.97
12302575--12302627	26	2.0	26	88	0	79	30	20	20	28	1.98
12305236--12305288	26	2.0	26	85	7	72	28	15	24	32	1.95
12307888--12307939	26	2.0	27	88	3	79	26	19	26	26	1.99
12308789--12308841	26	2.0	26	96	0	97	26	18	26	28	1.98
12309695--12309745	26	2.0	26	88	0	75	27	17	25	29	1.98
12306020--12311478	905	6.1	900	86	3	7128	25	24	24	25	2.00
12312944--12312996	26	2.0	26	96	0	97	24	26	20	28	1.99
12314204--12320429	902	7.0	902	84	5	7739	25	24	24	25	2.00
12318734--12318786	26	2.0	26	92	0	88	26	26	18	28	1.98
12321241--12321293	26	2.0	26	96	0	97	26	24	20	28	1.99
12322141--12322194	26	2.1	26	100	0	108	27	25	18	27	1.98
12320374--12326616	903	7.0	900	87	3	8259	25	24	24	25	2.00
12324803--12324860	26	2.3	25	79	5	73	31	22	17	29	1.96
12325704--12325756	26	2.0	26	92	0	88	28	24	18	28	1.98
12329875--12329927	26	2.0	26	92	0	88	26	24	18	30	1.98
12330746--12330796	26	1.9	27	92	4	86	25	25	19	29	1.99
12331632--12331684	26	2.0	26	92	0	88	32	22	18	26	1.97
12328121--12333135	896	5.6	891	86	4	6552	26	24	23	25	2.00
12332560--12334604	714	2.9	690	86	3	2693	27	22	23	26	2.00
12334650--12335025	159	2.4	158	85	1	475	20	27	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12334996--12335048	26	2.0	26	96	0	97	28	26	16	28	1.97
12336741--12336793	26	2.0	26	96	0	97	30	24	16	28	1.97
12337631--12337702	26	2.8	26	95	0	126	27	26	18	27	1.98
12338520--12338570	26	2.0	26	100	0	102	33	27	11	27	1.92
12335865--12339585	903	4.2	902	83	6	4719	25	25	24	25	2.00
12339422--12339474	26	2.0	26	96	0	97	32	26	15	26	1.95
12341705--12341757	26	2.0	26	85	7	72	28	15	24	32	1.95
12342591--12342640	26	1.9	26	91	0	82	28	22	26	24	1.99
12343478--12343530	26	2.0	26	100	0	106	26	20	26	26	1.99
12344382--12344434	26	2.0	26	88	0	79	26	22	24	26	2.00
12346147--12346199	26	2.0	26	92	0	88	28	18	26	26	1.98
12348820--12348870	26	2.0	26	96	0	93	29	17	27	25	1.98
12340519--12362748	902	25.1	897	85	4	27067	25	24	24	25	2.00
12350607--12350662	26	2.2	26	90	0	85	30	21	21	26	1.98
12354061--12354114	26	2.0	26	82	3	63	27	18	22	31	1.97
12354964--12355016	26	2.0	26	96	0	97	28	22	22	26	1.99
12355863--12355915	26	2.0	26	100	0	106	26	16	26	30	1.97
12356738--12356787	26	1.9	26	100	0	100	28	20	28	24	1.99
12359538--12359608	34	2.1	34	86	5	99	30	23	22	22	1.99
12360286--12360338	26	2.0	26	85	0	70	26	16	26	30	1.97
12361188--12361240	26	2.0	26	96	0	97	26	18	26	28	1.98
12363309--12363361	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12364182--12364234	26	2.0	26	89	7	81	32	26	15	26	1.95
12365085--12365134	26	1.9	26	100	0	100	28	26	16	30	1.96
12363479--12366450	901	3.3	890	87	3	4174	25	24	23	25	2.00
12365986--12366038	26	2.0	26	100	0	106	30	26	16	26	1.97
12366780--12366832	26	2.0	26	96	0	97	28	26	18	26	1.98
12366965--12367343	191	2.0	190	90	1	589	23	22	26	27	1.99
12367777--12367826	26	1.9	26	95	0	91	24	24	20	32	1.98
12367842--12368414	282	2.0	287	88	3	854	20	24	30	24	1.99
12374506--12374558	26	2.0	26	96	0	97	26	18	26	28	1.98
12375440--12375492	26	2.0	26	92	0	88	26	22	24	26	2.00
12377204--12377256	26	2.0	26	92	7	90	28	22	22	26	1.99
12379432--12379484	26	2.0	26	96	0	97	24	20	26	28	1.99
12377669--12380468	905	3.1	883	86	3	3826	25	24	24	25	2.00
12380327--12380379	26	2.0	26	100	0	106	26	20	26	26	1.99
12381107--12381160	26	2.1	26	96	0	99	25	18	27	27	1.98
12379692--12381248	781	2.0	778	90	1	2478	25	23	24	25	2.00
12382008--12382060	26	2.0	26	96	0	97	26	18	26	28	1.98
12380470--12387315	899	7.6	899	86	3	9038	25	23	24	26	2.00
12382908--12382960	26	2.0	26	88	0	79	24	16	28	30	1.97
12383819--12383869	25	2.0	25	92	3	84	27	17	25	29	1.98
12385615--12385683	26	2.7	26	97	0	129	31	13	24	30	1.93
12388128--12388512	191	2.0	195	87	3	564	27	27	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12390391--12390443	26	2.0	26	96	0	97	28	26	18	26	1.98
12391292--12391344	26	2.0	26	92	0	88	28	28	18	24	1.98
12389783--12394804	877	5.6	901	85	4	6622	25	25	23	25	2.00
12392023--12392093	34	2.1	34	89	0	106	21	21	26	30	1.98
12392230--12392279	26	2.0	25	92	4	82	28	28	18	26	1.98
12394005--12394057	26	2.0	26	96	0	97	26	24	20	28	1.99
12393132--12394795	899	1.8	902	89	1	2588	25	24	23	25	2.00
12395625--12395675	26	2.0	26	96	0	93	29	23	17	29	1.97
12397432--12397482	26	2.0	26	92	0	84	29	27	17	25	1.98
12400057--12400109	26	2.0	26	85	0	70	24	20	22	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190