genome.fa.s223.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  20  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3038126--3038195	23	3.0	23	91	0	104	30	18	28	22	1.98
3038153--3038319	87	1.9	87	92	0	280	23	17	34	23	1.96
3038310--3038461	49	3.2	49	89	4	224	19	17	30	31	1.95
3038336--3038472	44	3.0	44	89	5	193	21	18	30	29	1.97
3038429--3038525	32	3.0	32	95	0	176	21	18	29	29	1.97
3038535--3038606	32	2.2	32	92	0	117	23	18	25	33	1.97
3038377--3038606	113	2.1	108	86	4	316	22	18	28	30	1.97
3038616--3038687	32	2.2	32	97	0	135	20	18	29	31	1.96
3038647--3038833	49	3.9	48	84	5	247	24	18	26	29	1.98
3039173--3039226	22	2.5	22	100	0	108	25	18	18	37	1.94
3045667--3045725	22	2.6	22	84	10	66	38	0	0	61	0.96
3045669--3045744	23	3.3	23	85	5	91	42	0	0	57	0.98
3046513--3046537	8	3.1	8	100	0	50	48	0	12	40	1.40
3055682--3055733	15	3.6	14	80	19	63	40	0	1	57	1.10
3055681--3055732	22	2.4	21	84	15	63	40	0	1	57	1.10
3056259--3056309	17	3.2	16	67	10	50	43	11	19	25	1.85
3062805--3062856	21	2.5	21	90	6	79	50	0	0	50	1.00
3062805--3062856	22	2.5	22	93	6	90	50	0	0	50	1.00
3063424--3063517	28	3.3	28	70	18	77	50	2	4	43	1.33
3063419--3063816	60	6.7	61	79	12	365	51	4	6	38	1.46
3063576--3063614	15	2.5	15	87	4	51	69	2	0	28	1.02
3063754--3063786	14	2.3	15	94	5	59	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3063755--3063794	14	2.8	13	88	11	53	62	0	2	35	1.09
3069000--3069044	21	2.1	21	84	8	56	44	6	13	35	1.70
3069132--3069221	17	5.3	17	74	5	74	28	15	11	44	1.81
3069444--3069697	85	3.0	85	88	0	382	20	18	15	45	1.85
3071272--3071306	17	2.1	17	100	0	70	48	17	28	5	1.69
3071798--3072277	61	8.0	59	79	11	457	51	4	7	36	1.52
3071798--3072277	120	4.0	118	80	12	491	51	4	7	36	1.52
3079480--3079555	24	3.1	24	73	19	68	40	0	0	59	0.98
3079498--3079535	6	6.3	6	82	11	51	34	0	0	65	0.93
3079520--3079574	23	2.3	23	90	6	83	45	0	0	54	0.99
3079496--3079574	24	3.3	25	84	5	92	43	0	0	56	0.99
3080344--3080368	8	3.1	8	100	0	50	48	0	12	40	1.40
3089537--3089588	15	3.6	14	80	19	63	40	0	1	57	1.10
3089536--3089587	22	2.4	21	84	15	63	40	0	1	57	1.10
3090116--3090166	17	3.2	16	67	10	50	43	11	19	25	1.85
3090665--3090704	21	1.9	21	89	0	62	50	7	5	37	1.53
3091645--3091675	2	15.5	2	100	0	62	48	0	0	51	1.00
3095307--3095348	22	1.9	22	85	0	57	40	9	11	38	1.75
3101724--3101775	24	2.2	24	89	0	77	28	36	9	25	1.87
3101799--3101828	16	1.9	15	93	6	51	40	0	3	56	1.16
3101826--3101891	27	2.4	27	79	5	69	33	0	4	62	1.16
3104777--3104809	5	6.6	5	92	0	57	0	0	57	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3106374--3106428	24	2.3	24	87	0	74	41	3	1	52	1.29
3106377--3106436	24	2.5	23	82	12	68	40	3	1	55	1.27
3106925--3106961	19	1.9	19	88	0	56	35	0	0	64	0.94
3107596--3107659	33	1.9	33	100	0	128	10	29	3	56	1.49
3107943--3107980	11	3.5	11	85	3	51	60	0	0	39	0.97
3108049--3108106	4	15.5	4	77	13	52	67	0	5	27	1.12
3108067--3108117	26	2.0	26	92	0	84	62	0	5	31	1.19
3108049--3108104	11	5.1	11	80	6	69	67	0	5	26	1.11
3109172--3109216	23	2.0	23	95	0	81	42	6	0	51	1.28
3109176--3109232	23	2.5	23	85	5	71	47	5	0	47	1.24
3109721--3109767	23	2.0	24	83	8	60	53	2	2	42	1.25
3114016--3114104	43	2.1	43	86	0	124	30	16	11	41	1.84
3118461--3118508	14	3.6	14	73	23	50	64	0	0	35	0.94
3118518--3118559	15	2.7	15	88	3	57	50	2	0	47	1.14
3119084--3119148	18	3.4	18	73	14	60	50	1	1	46	1.20
3119400--3119499	28	3.9	25	76	17	91	36	2	2	60	1.20
3119419--3119544	49	2.6	49	81	8	123	41	0	0	57	1.10
3135840--3135872	16	2.0	17	88	5	50	30	0	0	69	0.88
3137137--3137201	32	2.0	32	100	0	130	36	18	12	32	1.88
3138890--3138914	6	4.2	6	100	0	50	68	16	0	16	1.22
3143991--3144120	56	2.3	56	83	10	149	38	6	8	46	1.61
3144086--3144130	2	23.5	2	82	8	58	44	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3146634--3146673	11	3.6	11	87	12	55	40	0	0	60	0.97
3147485--3147523	20	2.0	20	89	0	60	74	0	0	25	0.82
3148812--3148837	13	2.0	13	100	0	52	38	7	7	46	1.61
3154635--3154688	28	1.9	28	85	7	74	31	11	1	55	1.45
3155272--3155309	18	2.2	17	86	13	51	23	0	0	76	0.79
3155270--3155309	13	3.0	14	79	20	50	25	0	0	75	0.81
3156090--3156145	20	2.7	19	72	22	51	44	19	10	25	1.83
3156246--3156278	13	2.3	15	85	15	52	30	0	0	69	0.88
3160643--3160691	21	2.5	21	90	9	77	53	0	0	46	1.00
3160677--3160717	8	5.2	8	85	2	57	58	0	0	41	0.98
3160681--3160731	26	2.0	24	85	7	66	60	0	0	39	0.97
3165352--3165410	25	2.3	27	85	11	79	54	0	0	45	0.99
3165352--3165412	27	2.4	25	78	18	63	54	0	0	45	1.00
3165967--3166073	42	2.5	42	90	3	162	24	28	8	38	1.84
3167800--3167825	13	2.0	13	100	0	52	38	7	7	46	1.61
3169330--3169382	22	2.2	24	83	9	65	13	3	5	77	1.09
3169493--3169532	19	2.1	19	85	0	53	75	0	2	22	0.93
3171729--3171852	52	2.4	52	87	4	171	29	25	8	37	1.84
3171729--3171884	52	3.0	51	84	4	170	27	22	8	41	1.82
3171911--3171935	11	2.3	11	100	0	50	60	24	0	16	1.36
3172424--3172456	17	2.0	17	88	5	50	45	0	0	54	0.99
3175528--3175553	13	2.0	13	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3176712--3176759	17	2.8	17	80	0	60	52	4	2	41	1.32
3176773--3176833	27	2.3	27	77	11	63	54	1	3	40	1.27
3179955--3179991	18	2.1	18	94	0	65	45	10	18	24	1.81
3180681--3180736	20	2.8	20	78	7	53	48	1	0	50	1.11
3182780--3182809	15	2.0	15	93	0	51	10	13	0	76	1.01
3183041--3183092	26	2.0	25	88	3	77	48	5	7	38	1.56
3183123--3183182	10	5.8	10	76	5	57	65	3	1	30	1.19
3183122--3183182	20	3.0	20	90	4	86	65	3	1	29	1.18
3186540--3186566	12	2.2	12	100	0	54	48	0	0	51	1.00
3187403--3187430	2	14.0	2	100	0	56	50	0	0	50	1.00
3190839--3190872	3	11.3	3	93	0	59	32	0	0	67	0.91
3193542--3193585	19	2.3	19	80	7	54	56	0	2	40	1.11
3195472--3195521	19	2.5	21	78	18	54	10	0	72	18	1.12
3195738--3195768	16	1.9	16	93	0	53	35	0	0	64	0.94
3196022--3196070	25	1.9	26	95	4	91	51	0	8	40	1.32
3195572--3196515	495	1.9	492	90	2	1502	41	2	9	46	1.50
3196491--3196522	7	4.6	7	100	0	64	75	0	0	25	0.81
3199299--3199355	25	2.3	25	90	3	89	40	7	0	52	1.28
3200333--3200372	18	2.2	18	90	0	62	10	10	5	75	1.19
3218798--3218845	21	2.2	21	85	3	60	22	8	10	58	1.58
3227117--3227149	14	2.4	14	94	0	57	18	6	18	57	1.60
3227339--3227381	21	2.1	21	87	12	63	27	2	2	67	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3227392--3227441	24	2.1	23	82	10	57	64	0	0	36	0.94
3236696--3236720	6	4.2	6	100	0	50	48	0	36	16	1.46
3237844--3238185	168	2.0	168	93	1	578	40	4	10	44	1.61
3238427--3238452	13	2.0	13	100	0	52	38	0	0	61	0.96
3248448--3248550	51	2.0	51	92	0	170	48	18	19	13	1.81
3250313--3250386	36	2.2	34	83	11	91	63	0	0	36	0.95
3251334--3251410	35	2.2	35	88	2	111	50	2	0	46	1.15
3251343--3251408	16	4.0	16	75	12	62	51	3	0	45	1.16
3251339--3251486	35	4.3	33	74	11	102	46	6	2	45	1.39
3251435--3251496	16	3.5	17	75	18	56	43	6	3	46	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190