genome.fa.s223.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  38  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6577296--6577338	16	2.6	16	89	10	61	81	0	2	16	0.79
6577280--6577336	21	2.7	21	83	5	71	77	0	1	21	0.86
6578102--6578162	22	2.7	22	79	5	68	60	1	8	29	1.35
6578228--6578286	19	3.3	18	74	9	59	66	0	3	30	1.08
6578281--6578336	22	2.5	22	77	13	60	76	5	1	16	1.05
6578301--6578349	6	7.7	6	82	17	55	81	4	0	14	0.83
6578302--6578349	20	2.5	18	83	12	60	81	4	0	14	0.84
6578275--6578344	7	10.0	7	80	6	70	77	4	1	17	1.01
6578517--6578873	83	4.3	83	86	5	472	41	21	14	22	1.89
6579932--6579975	9	5.3	9	74	20	51	13	15	0	70	1.17
6579923--6579975	23	2.4	22	90	6	81	13	15	0	71	1.14
6579939--6579969	14	2.2	14	94	0	53	12	16	0	70	1.16
6587182--6587212	15	2.1	15	93	0	53	58	6	16	19	1.59
6590413--6590624	57	3.7	58	88	6	301	37	12	6	43	1.67
6590514--6590605	28	3.2	30	61	25	70	39	11	5	43	1.65
6590413--6590624	115	1.9	114	86	6	304	37	12	6	43	1.67
6590650--6590688	5	7.4	5	91	8	60	79	0	0	20	0.73
6590650--6590688	11	3.6	11	93	3	62	79	0	0	20	0.73
6590653--6590691	16	2.4	17	95	4	71	79	0	0	20	0.73
6591546--6591601	22	2.6	22	85	2	78	60	0	7	32	1.24
6591545--6591650	51	2.1	52	87	5	153	61	0	6	31	1.28
6592096--6592142	15	3.1	15	70	11	51	65	2	2	29	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6594614--6594663	25	2.1	23	85	7	64	48	6	0	46	1.27
6594164--6595121	498	1.9	497	89	4	1480	47	9	2	40	1.48
6594915--6594946	16	2.0	16	93	0	55	65	6	0	28	1.16
6595158--6595201	15	2.9	15	86	0	61	22	63	0	13	1.29
6595679--6595707	6	4.8	6	100	0	58	13	17	0	68	1.20
6596809--6596886	28	3.1	25	77	20	74	39	1	1	57	1.15
6596809--6596897	29	3.1	28	71	19	78	38	1	1	59	1.12
6596823--6596887	29	2.2	29	84	10	80	44	1	1	52	1.19
6596971--6597007	13	2.9	13	84	15	51	64	0	0	35	0.94
6597727--6597783	27	2.1	27	90	0	87	56	8	8	26	1.59
6597727--6597783	13	4.2	14	80	8	73	56	8	8	26	1.59
6598160--6598239	40	2.0	40	92	4	135	30	6	26	37	1.81
6601527--6601589	33	1.9	33	96	3	119	57	6	6	30	1.49
6612793--6612958	88	1.9	88	89	0	260	45	18	12	24	1.82
6620488--6620545	26	2.1	28	81	12	68	46	0	3	50	1.18
6620634--6620701	29	2.3	31	89	5	104	52	2	0	44	1.16
6620634--6620717	31	2.8	30	85	7	82	51	2	1	45	1.22
6620776--6620807	16	2.0	16	93	0	55	68	6	3	21	1.26
6621772--6621815	15	2.9	15	82	3	52	50	4	0	45	1.22
6621827--6621880	28	1.9	28	88	0	81	37	0	0	62	0.95
6622824--6622855	15	2.1	15	94	0	55	25	3	0	71	1.00
6625231--6625255	9	2.8	9	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6627024--6627294	64	4.3	64	76	9	268	41	10	8	39	1.70
6627048--6627322	126	2.2	124	80	8	308	42	12	8	36	1.73
6627024--6627320	62	4.7	59	76	12	231	41	11	8	38	1.72
6627229--6627458	127	1.8	126	80	5	277	42	13	6	38	1.68
6628851--6628910	23	2.5	24	84	12	79	46	5	0	48	1.24
6628851--6628910	22	2.6	24	87	10	81	46	5	0	48	1.24
6630669--6630848	86	2.1	86	81	8	206	33	3	18	43	1.68
6630791--6630847	25	2.2	25	81	9	62	31	3	19	45	1.67
6630805--6630852	25	1.9	25	91	8	80	22	4	25	47	1.69
6630877--6630928	26	2.0	26	81	7	61	42	1	17	38	1.60
6631303--6631357	25	2.2	24	83	3	74	38	5	20	36	1.75
6633859--6633974	60	1.9	62	84	7	157	37	5	13	43	1.67
6633865--6634002	60	2.3	60	79	7	147	39	6	13	40	1.71
6634917--6634956	6	6.8	6	85	5	55	25	0	0	75	0.81
6636291--6636351	10	5.9	10	75	19	54	54	0	1	44	1.10
6636300--6636364	33	2.0	34	87	6	98	50	0	1	47	1.10
6638719--6638759	15	2.7	16	82	17	52	0	19	0	80	0.71
6638719--6638760	16	2.7	15	88	7	57	0	19	0	80	0.70
6638719--6638767	16	3.1	15	80	11	53	2	18	0	79	0.83
6640383--6640437	25	2.3	23	84	12	67	49	1	0	49	1.11
6640392--6640440	11	4.2	11	80	10	53	53	2	0	44	1.12
6643022--6643048	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6643952--6644802	433	2.0	426	87	5	1225	44	7	9	38	1.64
6645562--6646594	525	2.0	505	84	6	1333	44	6	9	39	1.61
6653259--6653320	6	10.7	6	74	19	51	70	0	1	27	0.96
6653222--6653271	19	2.7	18	88	11	75	48	0	0	52	1.00
6653258--6653325	23	2.9	24	75	12	70	70	0	1	27	0.96
6653260--6653326	7	9.9	7	74	16	52	71	0	1	26	0.94
6657315--6657943	219	2.8	218	77	8	503	45	11	9	34	1.72
6657529--6658022	234	2.1	237	83	4	624	46	11	9	32	1.72
6661832--6661868	19	1.9	19	88	0	56	18	10	5	64	1.43
6664227--6664264	20	1.9	20	84	10	51	76	2	5	15	1.08
6664251--6664291	18	2.2	17	87	12	55	73	4	9	12	1.24
6664773--6664916	52	2.8	51	78	7	150	36	18	9	36	1.82
6665164--6665825	118	5.7	118	77	5	530	43	14	21	19	1.87
6665159--6665805	236	2.7	238	77	8	615	44	14	21	19	1.87
6665143--6665859	119	6.1	119	75	8	447	43	14	21	19	1.87
6666276--6666328	17	3.1	17	77	2	61	37	16	15	30	1.90
6667210--6667278	29	2.5	28	86	9	88	8	8	2	79	1.02
6667186--6667278	18	5.0	18	69	21	59	7	11	3	77	1.09
6667523--6667564	17	2.6	16	78	14	50	2	9	4	83	0.88
6671215--6671239	8	3.1	8	100	0	50	12	0	0	88	0.53
6671473--6671541	26	2.6	26	81	2	75	69	0	10	20	1.17
6672018--6672161	50	2.8	51	77	9	141	36	16	7	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6672310--6672341	14	2.1	16	88	11	50	37	12	12	37	1.81
6673238--6673306	29	2.4	29	87	0	102	55	14	7	23	1.64
6676430--6676490	28	2.1	29	85	8	81	81	6	4	6	0.96
6677454--6677554	48	2.3	45	79	15	113	15	3	5	74	1.17
6677475--6677516	17	2.5	17	80	7	50	14	7	4	73	1.21
6677521--6677563	18	2.4	18	85	11	54	18	0	2	79	0.85
6677614--6677690	19	3.8	19	72	16	66	23	6	12	57	1.59
6677786--6677835	20	2.5	21	83	9	68	38	6	8	48	1.57
6682213--6682264	20	2.5	21	81	6	61	46	0	0	53	1.00
6682235--6682291	19	3.0	19	75	10	53	50	0	0	49	1.00
6682340--6682382	11	3.8	11	77	17	52	48	4	0	46	1.22
6682654--6682681	14	2.0	14	100	0	56	35	0	7	57	1.26
6688831--6688874	22	2.0	22	82	4	54	27	4	25	43	1.74
6688886--6689040	52	3.0	52	76	9	156	44	7	19	29	1.77
6690867--6690904	2	19.0	2	100	0	76	50	0	0	50	1.00
6698991--6699031	20	2.0	20	100	0	82	41	4	9	43	1.59
6707314--6707348	17	2.1	17	100	0	70	34	11	31	22	1.90
6712506--6712549	22	2.0	22	91	8	72	34	9	13	43	1.76
6712780--6712842	25	2.5	25	81	0	72	17	22	19	41	1.90
6717764--6717795	2	16.5	2	93	6	57	50	0	0	50	1.00
6721117--6721166	12	4.0	13	75	19	52	36	0	10	54	1.34
6721130--6721178	11	4.3	11	82	15	55	34	0	8	57	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6721268--6721323	26	2.2	24	84	12	69	46	3	3	46	1.37
6721342--6721432	32	2.9	31	83	6	103	52	1	1	45	1.15
6721332--6721443	53	2.2	52	79	10	122	53	0	0	44	1.12
6721363--6721441	26	3.0	26	75	7	79	51	0	0	48	1.00
6721395--6721435	21	1.9	21	90	5	64	56	0	0	43	0.99
6722377--6722414	6	6.7	6	82	11	53	34	0	0	65	0.93
6722351--6722413	22	3.0	22	88	4	85	34	0	0	65	0.93
6723048--6723093	25	1.9	24	91	8	76	39	0	0	60	0.97
6723187--6723251	27	2.4	27	84	5	78	56	1	4	36	1.29
6723484--6723530	21	2.2	22	92	3	78	44	6	0	48	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190