genome.fa.s223.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  74  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12096264--12096316	26	2.0	26	92	0	88	28	28	18	24	1.98
12097176--12097228	26	2.0	26	96	0	97	28	26	18	26	1.98
12095473--12098490	903	3.3	900	88	3	4391	25	25	23	25	2.00
12098079--12098131	26	2.0	26	96	0	97	28	26	18	26	1.98
12100199--12100251	26	2.0	26	100	0	106	26	26	20	26	1.99
12101090--12101142	26	2.0	26	88	0	79	32	26	16	24	1.97
12099333--12108183	891	10.0	893	81	7	9542	26	25	23	25	2.00
12102856--12102913	26	2.2	25	85	8	80	29	22	18	29	1.98
12104605--12104657	26	2.0	26	96	0	97	26	28	20	24	1.99
12106400--12106452	26	2.0	26	88	0	79	30	24	16	28	1.97
12109079--12109131	26	2.0	26	88	0	79	28	16	24	30	1.97
12109985--12110037	26	2.0	26	92	0	88	28	16	24	30	1.97
12111743--12111795	26	2.0	26	92	0	88	26	16	26	30	1.97
12112648--12112700	26	2.0	26	92	0	88	28	18	26	26	1.98
12108301--12118892	901	11.9	900	85	4	13559	25	24	24	25	2.00
12114417--12114469	26	2.0	26	92	0	88	28	18	26	26	1.98
12116188--12116236	25	2.0	25	95	0	89	30	20	22	26	1.98
12117088--12117140	26	2.0	26	92	0	88	28	18	24	28	1.98
12115323--12118897	903	4.0	891	85	4	4619	25	24	24	25	2.00
12117992--12118042	26	2.0	26	84	0	66	27	15	25	31	1.96
12119549--12119601	26	2.0	26	96	0	97	26	18	26	28	1.98
12121325--12121377	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12122451--12122475	12	2.1	12	100	0	50	8	28	64	0	1.22
12123124--12123176	26	2.0	26	85	7	72	24	15	26	33	1.95
12124015--12124067	26	2.0	26	96	0	97	26	18	26	28	1.98
12125810--12125862	26	2.0	26	89	7	81	26	18	24	30	1.98
12126702--12126759	26	2.2	27	90	3	91	27	18	24	29	1.98
12118936--12130381	904	12.8	904	87	2	15241	25	24	24	25	2.00
12128489--12128541	26	2.0	26	96	0	97	26	18	26	28	1.98
12131668--12131720	26	2.0	26	96	0	97	28	20	24	26	1.99
12132550--12132602	26	2.0	26	85	7	72	26	16	26	30	1.97
12133251--12133301	26	2.0	26	88	0	75	29	17	25	27	1.98
12134131--12134181	26	2.0	26	96	0	93	27	19	27	25	1.99
12135013--12135065	26	2.0	26	88	0	79	28	22	22	26	1.99
12132624--12136092	892	3.9	888	86	3	4687	25	24	24	25	2.00
12135917--12135969	26	2.0	26	92	0	88	24	15	28	32	1.95
12137050--12137100	26	2.0	26	96	0	93	29	19	25	25	1.99
12139293--12139345	26	2.0	26	96	0	97	26	20	24	28	1.99
12138870--12142833	876	4.5	863	85	6	5147	25	24	24	25	2.00
12141923--12141975	26	2.0	26	92	0	88	28	16	26	28	1.97
12142807--12142859	26	2.0	26	100	0	106	26	20	26	26	1.99
12143646--12143696	26	2.0	26	96	0	93	31	15	25	27	1.96
12144743--12146793	717	2.9	713	89	2	3071	27	23	22	25	2.00
12146040--12151024	861	5.7	858	84	6	5845	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12151914--12160310	902	9.4	891	85	4	10292	25	24	23	25	2.00
12155056--12155106	26	2.0	26	84	0	66	54	11	7	25	1.63
12156355--12156407	26	2.0	26	88	0	79	30	24	16	28	1.97
12156829--12156887	27	2.2	27	81	6	66	57	11	10	20	1.63
12159018--12159070	26	2.0	26	92	0	88	30	26	16	26	1.97
12162764--12162816	26	2.0	26	100	0	106	26	20	26	26	1.99
12162857--12162930	26	2.8	26	85	0	103	27	25	40	6	1.80
12164608--12164660	26	2.0	26	100	0	106	26	20	26	26	1.99
12163057--12167118	902	4.6	899	83	7	4896	25	23	24	26	2.00
12166362--12166414	26	2.0	26	92	0	88	30	20	22	26	1.98
12168090--12168139	26	1.9	26	95	0	91	28	20	26	26	1.99
12168883--12168935	26	2.0	26	96	0	97	26	20	24	28	1.99
12168724--12169094	185	2.0	185	80	2	413	24	26	25	23	2.00
12169772--12169825	26	2.1	26	92	0	90	27	18	24	29	1.98
12171160--12171212	26	2.0	26	88	0	79	24	16	28	30	1.97
12172930--12172982	26	2.0	26	92	0	88	28	20	22	28	1.99
12174728--12174780	26	2.0	26	85	7	72	28	15	24	32	1.95
12177395--12177447	26	2.0	26	96	0	97	28	20	24	26	1.99
12170820--12180559	903	10.9	902	86	3	12664	25	24	25	25	2.00
12179190--12179242	26	2.0	26	92	7	90	28	16	26	28	1.97
12180073--12180126	26	2.1	26	100	0	108	27	18	25	27	1.98
12182417--12182469	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12183314--12183364	26	2.0	26	92	0	84	29	21	23	25	1.99
12180691--12185507	897	5.5	896	84	5	5761	25	24	24	25	2.00
12184210--12184263	28	2.0	27	96	3	99	25	16	25	31	1.97
12186603--12186655	26	2.0	26	100	0	106	26	26	20	26	1.99
12186660--12190779	876	4.7	850	82	7	4339	25	24	24	25	2.00
12189210--12189262	26	2.0	26	96	0	97	28	24	20	26	1.99
12190097--12190148	26	2.0	26	96	0	95	32	23	17	26	1.96
12188389--12190777	898	2.7	888	87	3	3436	26	24	24	25	2.00
12190355--12191193	416	2.0	418	90	1	1335	35	20	16	27	1.94
12190773--12192721	696	2.8	704	89	3	2909	28	23	22	26	1.99
12193696--12194051	183	1.9	184	85	3	486	20	23	29	27	1.98
12193893--12193945	26	2.0	26	92	0	88	24	24	22	28	2.00
12197153--12197205	26	2.0	26	96	0	97	28	28	16	26	1.97
12198017--12198069	26	2.0	26	88	0	79	30	28	18	22	1.98
12199814--12199866	26	2.0	26	88	0	79	28	22	20	28	1.99
12197930--12202974	892	5.7	888	82	8	5711	25	24	23	25	2.00
12202459--12202511	26	2.0	26	85	0	70	30	26	20	22	1.98
12203274--12203324	26	2.0	26	88	0	75	31	21	17	29	1.96
12204168--12204220	26	2.0	26	92	0	88	26	22	20	30	1.98
12205071--12205123	26	2.0	26	92	0	88	28	24	18	28	1.98
12202969--12212365	903	10.6	898	84	5	11205	25	24	24	25	2.00
12205974--12206026	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12207729--12207779	26	2.0	26	96	0	93	29	25	17	27	1.98
12211242--12211291	25	2.0	26	96	4	93	26	26	20	28	1.99
12212135--12212187	26	2.0	26	85	0	70	26	26	16	30	1.97
12212913--12212965	26	2.0	26	86	13	74	30	24	16	28	1.97
12211597--12213129	778	2.0	772	85	3	2058	25	23	24	25	2.00
12213815--12213867	26	2.0	26	92	0	88	30	26	16	26	1.97
12212370--12214553	890	2.4	892	86	3	3029	27	25	22	25	2.00
12216989--12217040	26	2.0	25	85	3	68	28	21	21	28	1.98
12217884--12217936	26	2.0	26	96	0	97	28	20	24	26	1.99
12215246--12218684	904	3.9	895	83	5	4348	25	23	24	26	2.00
12217863--12219487	835	1.9	836	88	2	2460	25	23	24	26	2.00
12220234--12220286	26	2.0	26	96	0	97	26	18	26	28	1.98
12223066--12223116	26	2.0	26	88	0	75	31	13	25	29	1.94
12227272--12227324	26	2.0	26	100	0	106	26	20	26	26	1.99
12226524--12228220	925	1.8	925	89	1	2677	24	23	24	26	2.00
12230098--12230150	26	2.0	26	96	0	97	28	20	24	26	1.99
12230925--12230977	26	2.0	26	92	0	88	30	20	22	26	1.98
12232457--12232509	26	2.0	26	96	0	97	28	22	18	30	1.98
12233005--12236677	901	4.2	875	84	6	4467	25	25	23	25	2.00
12234201--12234253	26	2.0	26	88	0	79	28	22	20	28	1.99
12236002--12236095	26	3.6	26	88	0	143	27	22	18	31	1.97
12237646--12237698	26	2.0	26	92	0	88	28	24	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12239332--12239384	26	2.0	26	100	0	106	26	26	20	26	1.99
12240234--12240286	27	2.0	27	96	0	97	26	26	18	28	1.98
12238508--12241810	903	3.7	899	88	2	4747	26	24	23	25	2.00
12241137--12241189	26	2.0	26	88	0	79	28	22	20	28	1.99
12241868--12241920	26	2.0	26	92	0	88	30	26	16	26	1.97
12241065--12242540	730	2.0	732	87	3	2159	27	24	22	25	2.00
12242770--12242822	26	2.0	26	96	0	97	28	26	18	26	1.98
12243643--12245285	828	2.0	826	90	1	2558	25	23	25	24	2.00
12245365--12245423	26	2.4	25	80	5	75	30	22	16	30	1.96
12246271--12246320	25	2.0	26	92	4	84	30	26	12	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190