genome.fa.s223.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  29  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4969891--4969920	13	2.4	12	94	5	51	0	10	0	90	0.47
4970990--4971022	12	2.6	13	90	9	59	69	0	0	30	0.88
4970978--4971022	12	3.8	12	83	13	58	66	0	0	33	0.92
4973699--4973740	16	2.7	15	85	10	57	21	9	0	69	1.17
4975830--4975866	14	2.8	14	88	8	51	62	0	0	37	0.96
4976488--4976530	23	1.9	22	81	13	52	44	6	4	44	1.52
4979349--4979398	21	2.4	21	83	3	57	70	2	0	28	0.99
4980310--4980346	14	2.5	16	79	20	53	81	0	18	0	0.70
4980361--4980407	3	15.7	3	100	0	94	68	0	0	31	0.90
4980618--4981014	50	7.9	51	76	10	243	42	17	10	30	1.82
4980694--4981014	50	6.4	50	80	3	335	41	16	10	31	1.82
4991848--4991881	17	1.9	18	88	5	52	14	2	8	73	1.19
4993133--4993181	21	2.4	21	72	3	55	44	8	0	46	1.33
4994172--4994245	12	5.6	13	77	16	57	81	1	14	2	0.88
4994172--4994250	15	5.4	14	86	10	56	81	2	13	2	0.91
4994172--4994220	18	2.7	18	84	12	57	83	0	14	2	0.73
4994169--4994250	14	5.8	13	84	12	76	80	2	14	2	0.92
4994181--4994277	14	6.7	14	80	14	83	80	4	10	5	1.00
4994209--4994275	24	2.7	25	79	6	66	79	5	8	5	1.06
4997591--4997632	15	2.8	15	88	0	57	19	0	28	52	1.46
4997607--4997678	23	3.1	23	87	0	90	23	4	22	50	1.66
4997667--4997735	13	4.8	15	74	15	56	21	0	27	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4997666--4997707	13	3.1	13	83	12	57	26	0	23	50	1.50
4997666--4997735	29	2.4	29	83	2	88	22	0	27	50	1.50
4997788--4997812	13	1.9	13	100	0	50	24	4	24	48	1.68
4997827--4997918	30	3.1	30	79	6	96	17	1	30	51	1.53
4997875--4998046	7	24.0	7	65	19	61	21	0	32	45	1.52
4997909--4997986	12	5.9	12	75	19	75	24	0	28	47	1.52
4997893--4998003	28	4.0	28	88	2	161	23	0	30	45	1.53
4997893--4998003	55	2.0	56	89	1	170	23	0	30	45	1.53
4997893--4998046	16	10.7	15	68	25	75	22	0	31	45	1.53
4999451--4999496	12	3.8	12	82	0	56	6	13	45	34	1.69
4999727--4999799	28	2.6	28	86	4	94	32	19	24	23	1.97
4999752--4999808	28	2.0	28	89	0	87	31	19	24	24	1.98
5000216--5000292	35	2.2	35	83	0	100	50	10	22	16	1.75
5000212--5000858	206	3.1	206	83	3	664	47	10	20	20	1.80
5000176--5000858	105	6.6	105	76	10	518	47	10	20	20	1.79
5002231--5002269	8	5.4	7	82	17	53	2	12	0	84	0.72
5006606--5006644	14	2.7	15	80	8	53	51	10	0	38	1.36
5006548--5006691	71	2.0	73	84	2	193	45	7	9	37	1.64
5006615--5006873	121	2.2	118	82	7	307	44	5	10	39	1.61
5006626--5006879	59	4.3	59	80	7	259	45	5	11	38	1.62
5006856--5006884	14	2.0	15	93	6	51	55	6	0	37	1.27
5006871--5007000	58	2.3	56	90	6	208	53	6	6	33	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5006546--5007045	250	2.0	250	82	7	614	46	6	9	38	1.61
5013870--5013915	20	2.2	20	84	3	56	71	4	4	19	1.20
5015600--5015715	8	15.5	8	70	19	72	18	0	30	50	1.52
5015600--5015656	23	2.5	23	94	0	96	14	0	33	52	1.41
5015614--5015671	23	2.5	23	88	0	80	18	1	29	50	1.57
5015646--5015700	15	3.9	14	79	11	67	23	1	23	50	1.58
5015598--5015995	30	14.0	28	70	15	105	20	2	29	47	1.61
5015783--5015966	30	6.3	29	79	7	119	21	2	28	47	1.64
5015887--5016011	16	8.7	15	74	17	79	21	1	32	44	1.62
5015902--5015951	12	3.9	12	78	14	55	22	0	30	48	1.51
5015913--5016011	45	2.3	43	84	7	119	21	1	32	45	1.59
5017585--5017674	28	3.2	28	76	1	92	31	17	25	25	1.97
5037964--5037993	11	2.7	11	100	0	60	56	10	26	6	1.57
5040503--5040625	56	2.2	55	80	9	135	34	17	8	38	1.82
5046750--5046783	12	2.8	12	81	0	50	50	14	0	35	1.44
5047462--5047492	16	1.9	16	93	0	53	9	9	0	80	0.90
5047470--5047508	18	2.2	18	90	0	60	7	10	0	82	0.86
5050176--5050222	15	3.1	15	90	3	76	48	4	25	21	1.68
5053393--5053785	57	6.7	57	88	8	564	34	13	7	44	1.73
5053857--5053903	22	2.1	23	84	4	60	74	8	0	17	1.05
5054197--5054234	20	1.9	20	94	0	67	23	13	26	36	1.91
5054199--5054242	20	2.2	20	88	4	63	25	18	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5054275--5054322	19	2.5	19	75	0	51	22	25	29	22	1.99
5054299--5054364	31	2.1	31	86	10	91	25	22	24	27	2.00
5054853--5054890	3	12.7	3	94	0	67	65	0	2	31	1.06
5054959--5054999	3	14.0	3	85	14	59	68	2	0	29	1.03
5059222--5059321	49	2.0	49	98	0	191	32	22	10	36	1.87
5066606--5066807	105	1.9	105	79	4	228	33	17	9	40	1.82
5066741--5066890	55	2.7	54	74	8	149	35	9	7	48	1.63
5067714--5067840	68	1.9	68	88	3	193	42	13	5	38	1.67
5074225--5074275	21	2.4	20	81	12	57	66	5	15	11	1.41
5074662--5074694	17	1.9	17	100	0	66	18	9	24	48	1.76
5075012--5075149	61	2.2	62	80	12	151	34	17	7	40	1.77
5079441--5079702	121	2.1	123	80	8	284	36	14	12	36	1.84
5086090--5086148	27	2.1	29	84	12	79	42	1	1	54	1.20
5086846--5086901	28	2.0	28	82	10	69	33	3	5	57	1.39
5090809--5090889	41	2.0	41	97	0	153	46	7	8	37	1.63
5092229--5092261	15	2.2	15	89	10	50	51	18	30	0	1.46
5098841--5098866	12	2.2	12	100	0	52	73	0	7	19	1.07
5103948--5104007	8	7.7	7	75	25	50	80	1	0	18	0.80
5103916--5104007	48	2.0	46	82	4	112	75	1	1	22	0.94
5103955--5104005	17	2.8	18	75	24	54	78	1	0	19	0.85
5103943--5104007	11	5.6	12	74	18	66	80	1	0	18	0.80
5105252--5105282	16	1.9	16	100	0	62	25	22	6	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5108220--5108268	23	2.1	23	81	7	55	53	0	0	46	1.00
5116258--5116376	58	2.1	58	95	0	211	44	7	8	39	1.63
5119993--5120049	26	2.3	24	87	6	78	47	1	1	49	1.22
5120016--5120119	38	2.7	38	81	11	124	46	1	1	50	1.23
5120016--5120134	38	3.2	38	80	10	120	45	1	2	50	1.25
5120269--5120306	17	2.4	16	91	8	60	55	0	2	42	1.14
5120410--5120449	19	2.0	20	90	4	64	42	2	0	55	1.13
5120473--5120540	26	2.7	24	78	13	82	48	4	0	47	1.22
5120656--5120685	14	2.1	14	93	0	51	56	0	0	43	0.99
5130006--5130065	19	3.2	19	82	0	66	33	16	15	35	1.90
5131166--5131190	13	1.9	13	100	0	50	84	16	0	0	0.63
5131241--5131267	14	1.9	14	100	0	54	85	7	0	7	0.75
5131519--5131564	20	2.3	20	100	0	92	52	4	8	34	1.52
5131871--5131913	23	1.9	22	86	13	61	60	2	4	32	1.30
5144041--5144075	16	2.2	16	100	0	70	45	11	0	42	1.40
5147765--5147845	26	3.0	27	81	7	101	37	14	3	44	1.63
5148037--5148122	33	2.7	32	76	8	93	41	17	8	32	1.79
5148050--5148122	33	2.2	33	80	2	94	41	19	9	30	1.83
5151621--5151667	19	2.4	19	80	13	51	80	4	2	12	0.94
5152635--5152850	49	4.4	47	80	8	207	33	14	14	37	1.87
5152664--5152871	49	4.2	49	79	12	219	32	14	15	37	1.88
5152635--5152848	101	2.2	98	81	5	250	34	14	14	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5153378--5153420	17	2.4	18	81	11	54	72	2	0	25	0.97
5155240--5155310	14	5.1	14	73	13	58	74	2	4	18	1.10
5158021--5158051	15	2.1	15	93	0	53	38	12	19	29	1.89
5160287--5160328	19	2.3	18	92	8	68	69	9	4	16	1.33
5161078--5161126	16	3.1	16	71	11	55	24	8	0	67	1.18
5161078--5161139	32	1.9	32	90	6	99	22	8	1	67	1.25
5161105--5161246	48	2.9	49	87	1	196	26	16	7	50	1.70
5161230--5161359	38	3.4	38	78	2	136	26	18	3	50	1.64
5161517--5161550	2	17.0	2	93	0	59	47	0	0	52	1.00
5163483--5163547	33	2.0	33	100	0	130	30	7	18	43	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190