genome.fa.s223.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  113  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17604122--17604166	16	2.9	15	81	18	56	2	17	0	80	0.82
17604833--17604868	19	1.9	18	88	5	54	5	22	2	69	1.22
17612212--17612257	11	4.1	12	78	13	53	26	2	0	71	0.97
17612213--17612257	21	2.1	22	88	12	67	24	2	0	73	0.95
17612535--17612568	3	11.3	3	100	0	68	67	0	0	32	0.91
17614032--17614056	11	2.3	11	100	0	50	8	16	0	76	1.02
17615637--17615745	54	2.0	54	89	0	164	34	19	12	33	1.90
17621675--17621742	18	3.7	17	71	28	59	35	1	1	61	1.14
17621675--17621740	6	11.7	6	74	6	50	33	1	1	63	1.13
17621733--17621777	21	2.2	21	88	7	67	48	2	0	48	1.13
17625460--17625498	19	2.0	20	85	5	53	10	5	23	61	1.48
17625713--17625784	23	3.1	23	89	0	108	20	16	12	50	1.78
17626288--17626344	15	4.1	14	77	22	66	78	1	17	1	0.91
17626300--17626339	6	6.2	6	83	16	53	82	2	15	0	0.77
17626288--17626344	21	2.8	20	86	7	87	78	1	17	1	0.91
17627937--17627997	28	2.2	27	82	5	77	21	13	3	62	1.45
17627947--17628000	28	1.9	28	92	0	90	18	12	1	66	1.33
17631232--17631265	2	17.5	2	93	6	61	50	0	0	50	1.00
17631442--17631525	24	3.5	24	75	3	89	48	8	4	38	1.54
17635134--17635206	24	3.0	24	74	9	76	60	0	5	34	1.20
17635376--17635436	30	2.1	29	87	9	88	63	0	1	34	1.04
17635996--17636043	22	2.2	21	81	3	60	10	6	8	75	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17636079--17636239	35	4.7	34	70	13	100	50	12	18	18	1.77
17636134--17636249	35	3.3	35	76	7	128	48	12	22	17	1.80
17636146--17636380	35	6.8	35	72	9	133	51	11	16	20	1.76
17636176--17636448	137	2.0	138	82	2	334	50	12	16	20	1.77
17636187--17636480	137	2.1	138	80	1	313	52	12	15	20	1.75
17636401--17636479	35	2.3	34	77	12	88	56	10	12	20	1.64
17636985--17637103	35	3.4	35	80	6	134	52	10	18	18	1.74
17638288--17638332	23	2.0	23	86	8	65	37	22	13	26	1.91
17638341--17638482	22	6.3	23	67	7	76	31	17	20	30	1.96
17638691--17638730	21	1.9	21	89	0	62	20	25	30	25	1.99
17642489--17642600	58	1.9	58	90	0	179	26	25	25	22	2.00
17642621--17642655	6	5.8	6	90	10	54	20	0	0	80	0.72
17642623--17642657	11	3.1	12	88	12	56	20	0	0	80	0.72
17642666--17642751	14	5.6	16	71	19	51	26	2	3	67	1.19
17642710--17642756	23	2.1	23	88	11	71	17	2	2	78	0.94
17642670--17642785	60	1.9	61	81	10	139	27	3	2	66	1.21
17643716--17643752	19	1.9	19	89	10	58	18	2	0	78	0.87
17643716--17643857	11	12.5	11	72	18	51	18	5	2	73	1.12
17643776--17643841	16	3.9	17	71	24	52	12	7	1	78	1.01
17643783--17643850	18	3.3	21	78	16	79	13	5	1	79	0.98
17643819--17643862	19	2.4	18	85	7	54	13	6	0	79	0.92
17643865--17644335	118	4.0	116	89	5	662	44	7	13	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17643892--17644335	57	7.6	57	85	7	599	43	7	13	35	1.72
17644200--17644288	28	3.1	30	63	26	73	46	7	11	34	1.69
17647455--17647479	10	2.5	10	100	0	50	40	16	12	32	1.84
17648065--17648106	21	2.0	21	81	9	50	45	9	14	30	1.77
17650655--17650687	13	2.5	13	86	13	50	21	0	0	78	0.75
17652640--17652768	38	3.4	37	81	10	152	35	10	17	36	1.84
17652640--17652762	40	3.2	40	79	14	143	36	8	18	35	1.83
17653841--17653875	18	2.0	18	88	5	54	74	5	0	20	1.02
17655040--17655119	42	1.9	42	82	10	101	18	5	27	48	1.69
17655046--17655099	16	3.3	16	76	2	54	18	3	27	50	1.64
17659263--17659288	13	2.0	13	100	0	52	53	0	0	46	1.00
17659735--17659773	3	13.0	3	100	0	78	66	0	0	33	0.92
17662160--17662196	19	1.9	19	88	0	56	78	0	5	16	0.93
17663704--17663728	1	25.0	1	100	0	50	100	0	0	0	0.00
17665212--17665263	19	2.7	20	82	11	63	32	1	1	63	1.16
17674280--17674346	30	2.3	30	82	7	75	58	0	7	34	1.26
17674682--17674724	13	3.3	13	83	0	50	23	2	2	72	1.08
17684227--17684270	23	2.0	23	90	4	72	70	2	0	27	0.99
17685362--17685396	15	2.2	16	90	5	54	31	11	0	57	1.34
17686079--17686165	32	2.8	32	81	8	97	25	6	25	42	1.79
17686169--17686199	16	1.9	16	93	0	53	35	6	12	45	1.68
17688517--17688543	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17691846--17691885	19	2.0	20	90	9	64	20	10	0	70	1.16
17692411--17692450	19	2.0	20	90	9	64	20	10	0	70	1.16
17691649--17692771	565	2.0	565	98	0	2178	39	11	11	38	1.77
17696087--17696132	20	2.3	20	81	7	58	82	4	10	2	0.89
17696087--17696169	11	7.9	10	71	17	53	77	3	15	3	1.05
17696087--17696131	9	4.7	9	79	15	54	82	4	11	2	0.91
17700722--17700757	18	2.0	18	88	0	54	75	0	2	22	0.94
17704426--17704492	2	35.0	2	79	8	77	43	0	5	50	1.26
17704429--17704492	14	4.6	14	83	11	87	42	0	6	51	1.27
17709595--17710108	255	2.0	255	100	0	1028	42	10	15	31	1.81
17710701--17710793	46	2.0	46	97	0	177	16	20	10	52	1.73
17724562--17725228	363	1.9	352	80	8	792	42	7	6	43	1.59
17725654--17725707	24	2.2	24	77	9	56	66	0	9	24	1.20
17726057--17726094	20	1.9	20	88	0	58	31	15	10	42	1.81
17726513--17726663	44	3.5	44	68	15	125	40	5	4	49	1.46
17726516--17726695	88	2.0	88	93	2	308	40	5	3	50	1.44
17726556--17726695	44	3.2	43	69	14	124	39	5	3	52	1.41
17726675--17726743	26	2.8	24	81	12	79	40	5	0	53	1.25
17726728--17726779	18	2.8	20	80	11	65	36	5	3	53	1.43
17730068--17730106	15	2.6	16	84	12	55	58	0	0	41	0.98
17730076--17730119	15	3.0	14	90	6	61	54	0	0	45	0.99
17730113--17730164	25	2.1	25	82	13	63	50	1	3	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17731838--17731889	19	2.8	18	80	11	61	48	3	0	48	1.20
17732406--17732460	18	3.1	17	77	10	56	56	0	0	43	0.99
17732505--17732615	13	8.2	13	65	21	50	40	0	3	55	1.17
17732561--17732619	18	3.3	18	83	9	59	42	0	1	55	1.09
17732564--17732620	28	2.0	28	93	6	98	42	0	1	56	1.10
17732579--17732629	18	2.9	18	88	8	70	41	0	0	58	0.98
17733666--17733711	14	3.4	14	80	14	60	19	4	0	76	0.96
17740636--17740684	20	2.5	19	84	15	64	83	4	8	4	0.89
17744126--17744182	9	6.1	9	76	15	53	80	0	12	7	0.89
17750751--17750784	17	2.1	17	88	5	52	79	2	11	5	1.02
17755019--17755046	4	7.0	4	100	0	56	75	0	0	25	0.81
17757910--17757953	22	2.0	22	81	0	52	22	18	2	56	1.52
17758209--17758245	18	2.1	18	94	0	65	29	16	13	40	1.86
17768363--17768429	32	2.1	33	85	2	91	43	0	1	55	1.09
17769781--17769854	13	5.5	14	69	18	59	37	0	2	59	1.12
17769798--17769864	20	3.4	21	74	13	63	46	0	0	53	1.00
17769781--17769866	40	2.1	41	85	10	115	41	0	2	55	1.12
17774264--17774302	20	2.0	20	100	0	78	46	0	0	53	1.00
17775095--17775161	27	2.6	25	88	9	98	64	1	1	32	1.12
17778531--17778565	2	17.5	2	93	0	61	48	0	0	51	1.00
17784191--17784229	19	2.1	19	95	0	69	43	5	35	15	1.69
17787706--17787781	35	2.1	36	90	2	118	30	11	23	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17793456--17793502	24	2.0	24	91	0	76	48	8	2	40	1.45
17794128--17794205	33	2.3	33	82	8	95	48	8	10	32	1.68
17794137--17794208	33	2.1	35	89	5	112	50	9	9	30	1.68
17794527--17794586	22	2.8	22	81	16	72	21	3	5	70	1.22
17797380--17797413	17	2.0	17	94	0	59	44	23	11	20	1.84
17798090--17798211	51	2.4	51	82	2	140	44	9	4	41	1.56
17798075--17798211	51	2.8	48	78	8	132	47	8	3	40	1.52
17802099--17802132	2	17.0	2	100	0	68	50	0	50	0	1.00
17807436--17807683	122	2.0	122	95	0	442	44	10	16	27	1.81
17808871--17808908	15	2.5	15	95	0	67	21	7	13	57	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190