genome.fa.s223.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  6  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498156--498609	229	2.0	231	85	6	618	43	7	3	45	1.48
500642--500696	25	2.2	25	80	9	58	40	7	5	47	1.54
501381--501604	83	2.7	83	83	2	245	43	17	12	25	1.85
501381--501604	42	5.4	42	84	2	236	43	17	12	25	1.85
502051--502113	25	2.6	25	85	9	87	34	14	11	39	1.81
502074--502113	14	3.1	14	72	20	50	32	12	12	42	1.80
502102--502295	79	2.5	79	93	0	336	34	16	10	38	1.83
502232--502324	21	4.3	21	72	12	89	36	17	10	35	1.84
503509--503579	30	2.3	31	86	11	94	9	15	0	74	1.06
503509--503598	8	11.7	7	74	15	63	10	17	0	72	1.11
509669--509722	27	1.9	28	82	14	67	42	1	5	50	1.36
510124--510163	19	2.1	19	85	0	53	77	0	5	17	0.94
510218--510262	20	2.2	20	96	0	81	35	6	22	35	1.80
510532--510569	18	2.1	19	85	5	51	42	2	2	52	1.29
514762--514822	27	2.3	27	86	11	81	42	1	1	54	1.20
515858--515882	2	12.5	2	100	0	50	48	0	0	52	1.00
516163--516206	22	2.0	23	90	4	72	40	4	2	52	1.34
517575--517913	168	2.0	168	93	1	581	30	20	25	24	1.99
517830--518228	201	2.0	201	95	0	717	23	20	30	25	1.98
518569--518857	59	4.8	61	75	9	227	38	11	5	44	1.63
518569--518857	118	2.4	120	81	5	309	38	11	5	44	1.63
518839--518873	18	2.0	17	88	5	52	48	0	5	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520046--520408	85	4.4	84	74	12	304	47	15	17	19	1.83
520064--520378	158	2.0	158	84	2	409	47	16	17	18	1.83
532123--532594	59	7.9	58	83	4	471	34	10	6	48	1.64
532082--532588	178	2.9	176	82	8	541	34	11	6	47	1.65
532583--532617	17	2.1	17	89	5	54	40	0	5	54	1.24
534146--534199	2	27.0	2	100	0	108	50	0	0	50	1.00
537603--537660	30	1.9	31	85	3	82	31	6	15	46	1.72
543045--543264	119	1.8	123	83	5	297	52	7	12	28	1.65
546626--546674	21	2.3	22	93	6	84	53	12	18	16	1.73
548936--549591	61	11.0	59	80	9	615	35	11	5	47	1.63
548936--549591	118	5.5	116	80	10	614	35	11	5	47	1.63
548939--549591	57	10.9	58	75	16	468	35	11	5	47	1.63
550659--551830	86	13.9	87	74	10	622	45	12	18	23	1.84
551144--551830	171	4.0	171	78	6	606	46	12	17	23	1.82
552633--552730	48	2.0	48	80	3	108	22	20	12	44	1.84
552676--552844	62	2.7	62	88	5	236	17	18	10	52	1.73
563228--563766	59	9.2	59	75	12	359	31	11	7	49	1.68
563175--563618	58	7.8	56	77	10	350	31	11	7	48	1.68
563344--563601	57	4.6	54	80	9	222	31	12	6	49	1.66
563526--563765	125	2.0	117	81	10	279	31	10	6	51	1.62
563780--563828	22	2.2	22	81	3	53	53	2	4	40	1.32
571055--571258	41	5.0	41	83	1	257	21	14	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571054--571238	81	2.3	82	86	0	255	21	13	18	47	1.82
572677--572859	57	3.3	57	79	8	198	55	8	10	25	1.63
572679--572878	54	3.7	54	77	10	176	53	10	11	26	1.67
574294--574337	17	2.7	15	80	16	52	15	2	2	79	0.93
579171--579279	50	2.1	50	81	3	119	23	20	7	48	1.74
579479--579525	16	2.8	16	80	6	58	17	4	0	78	0.90
579750--579794	23	2.0	23	82	8	56	75	6	2	15	1.11
580405--580434	15	2.1	14	93	6	51	26	13	3	56	1.52
580650--580694	18	2.5	19	78	10	58	71	8	4	15	1.28
580991--581240	89	3.0	81	80	10	227	45	17	11	25	1.82
581075--581266	44	4.4	45	77	12	202	46	17	10	25	1.81
581103--581266	44	3.7	44	82	8	215	45	18	11	24	1.83
581102--581266	89	1.9	88	94	1	294	44	18	12	24	1.84
581615--581661	23	2.0	23	83	0	58	42	17	12	27	1.85
581781--581839	14	4.6	14	78	18	65	38	11	5	44	1.63
583018--583124	14	8.0	13	78	10	101	7	14	0	76	1.05
583027--583142	19	6.3	19	65	28	54	8	14	0	76	1.00
583034--583123	7	13.4	7	77	11	75	7	15	0	76	1.00
583053--583167	39	2.9	40	82	7	121	8	17	0	73	1.07
583509--583574	9	7.2	9	77	8	62	0	10	6	83	0.81
583509--583574	19	3.8	17	80	11	62	0	10	6	83	0.81
583509--583574	17	3.8	16	77	15	60	0	10	6	83	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587831--587874	23	1.9	23	86	9	63	0	38	0	61	0.96
598063--598089	2	13.5	2	100	0	54	0	51	0	48	1.00
600771--600830	29	2.1	29	81	12	70	58	5	10	26	1.51
602592--602639	24	2.2	20	85	14	60	41	12	2	43	1.54
605520--605676	52	3.0	52	80	1	154	42	8	20	28	1.81
606159--606243	31	2.7	31	83	0	116	28	18	24	28	1.98
606256--606338	25	3.3	25	81	6	96	40	3	32	22	1.71
606573--606632	20	3.0	20	95	0	102	25	15	20	40	1.90
606666--606768	52	2.0	52	88	7	156	44	6	19	29	1.76
606746--606793	24	2.0	24	84	8	62	33	4	27	35	1.76
607337--607409	25	2.9	25	83	0	74	45	6	24	23	1.77
607345--607423	25	3.2	25	83	3	88	41	3	29	25	1.73
610557--610637	6	12.2	6	71	23	56	19	3	1	75	1.02
610832--610888	30	1.9	29	86	10	80	73	5	15	5	1.19
610833--610898	31	2.2	29	81	10	71	75	7	13	3	1.13
611178--611222	18	2.4	18	89	10	65	82	6	11	0	0.84
611657--611711	20	2.8	20	75	10	60	72	1	1	23	1.04
612303--612338	17	2.1	18	89	5	56	25	0	8	66	1.19
612335--612376	21	2.0	21	85	0	57	28	2	7	61	1.35
613436--613507	27	2.7	26	81	10	83	50	0	4	45	1.21
613564--613649	29	2.8	29	84	8	100	43	2	1	53	1.21
614304--614328	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616965--617021	29	1.9	29	86	10	80	75	5	14	5	1.15
617217--617245	3	9.7	3	100	0	58	65	0	0	34	0.93
617301--617359	19	2.8	20	76	21	59	81	5	8	5	0.98
617315--617360	19	2.5	19	86	10	60	84	6	8	0	0.77
618451--618486	17	2.1	18	89	5	56	25	0	8	66	1.19
618483--618524	21	2.0	21	85	0	57	28	2	7	61	1.35
619581--619652	27	2.7	26	81	10	83	50	0	4	45	1.21
619709--619794	29	2.8	29	84	8	100	43	2	1	53	1.21
620449--620473	2	12.5	2	100	0	50	48	0	0	52	1.00
623111--623167	29	1.9	29	86	10	80	75	5	14	5	1.15
623362--623390	3	9.7	3	100	0	58	65	0	0	34	0.93
623446--623504	19	2.8	20	76	21	59	81	5	8	5	0.98
623460--623505	19	2.5	19	86	10	60	84	6	8	0	0.77
623898--623960	24	2.7	23	80	4	65	53	3	4	38	1.38
623947--623994	16	2.8	17	78	12	53	64	4	2	29	1.23
624580--624615	17	2.1	18	89	5	56	25	0	8	66	1.19
624612--624653	21	2.0	21	85	0	57	28	2	7	61	1.35
625901--625969	29	2.3	30	82	5	86	43	0	1	55	1.08
625955--626066	54	2.1	54	96	0	206	35	6	15	42	1.72
633088--633120	13	2.5	14	85	14	52	57	3	0	39	1.14
633314--633529	113	1.9	114	84	5	296	37	18	11	32	1.86
633571--633618	23	2.0	24	88	4	71	50	2	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633567--633655	31	2.9	30	74	9	90	46	1	1	51	1.15
633622--633667	25	1.9	25	82	8	60	47	0	2	50	1.13
633567--633702	62	2.2	62	80	8	145	47	0	1	50	1.15
633716--633758	16	2.8	16	86	10	54	34	0	0	65	0.93
634677--634715	15	2.5	17	84	16	57	33	0	0	66	0.92
635603--635649	24	2.0	24	87	4	69	6	10	0	82	0.82
637590--637628	13	3.0	13	78	14	53	56	0	15	28	1.40
637891--637956	30	2.2	30	91	0	105	42	7	0	50	1.31
638906--638946	2	20.5	2	100	0	82	48	0	0	51	1.00
639373--639429	20	2.8	20	84	7	71	29	28	24	17	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190