genome.fa.s223.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  71  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11674542--11679604	904	5.6	899	84	6	6457	25	24	24	25	2.00
11676682--11676734	26	2.0	26	92	0	88	24	18	28	28	1.98
11677583--11677635	26	2.0	26	96	0	97	26	18	26	28	1.98
11676635--11679604	913	3.3	910	83	6	3640	24	24	25	25	2.00
11679390--11679447	26	2.2	27	90	3	91	27	18	24	29	1.98
11679412--11679763	161	2.2	162	84	3	444	20	27	29	22	1.98
11682022--11682083	32	1.9	33	87	9	92	27	16	30	25	1.96
11683832--11683884	26	2.0	26	92	0	88	24	18	28	28	1.98
11684727--11684779	26	2.0	26	92	7	90	26	16	26	30	1.97
11683785--11686671	892	3.2	902	85	5	3799	25	23	25	25	2.00
11686530--11686587	26	2.2	27	93	3	100	27	20	24	27	1.99
11686552--11686904	162	2.2	161	85	2	451	20	28	29	22	1.98
11686695--11691628	911	5.5	871	80	10	5324	25	23	25	25	2.00
11690229--11690307	26	3.0	26	94	0	131	29	17	24	29	1.97
11689367--11691587	891	2.5	895	82	7	2671	25	23	25	25	2.00
11691146--11691196	26	2.0	26	96	0	93	27	15	27	29	1.96
11692029--11693034	509	2.0	509	92	1	1676	27	19	22	30	1.98
11693165--11693214	25	2.0	26	84	11	68	26	18	26	30	1.98
11694043--11694095	26	2.0	26	88	0	79	28	16	26	28	1.97
11695820--11695872	26	2.0	26	96	0	97	26	18	26	28	1.98
11698493--11698545	26	2.0	26	92	0	88	28	18	24	28	1.98
11692522--11718058	902	28.8	900	84	5	29728	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11702064--11702116	26	2.0	26	88	0	79	26	18	24	30	1.98
11703821--11703870	26	1.9	26	100	0	100	28	20	26	26	1.99
11708224--11708276	26	2.0	26	92	0	88	26	15	24	33	1.95
11710022--11710074	26	2.0	26	92	0	88	28	18	24	28	1.98
11705592--11718058	903	14.0	903	85	5	14912	25	24	24	25	2.00
11711756--11711808	26	2.0	26	100	0	106	26	20	26	26	1.99
11712653--11712705	26	2.0	26	96	0	97	26	18	26	28	1.98
11716230--11716279	26	1.9	26	95	0	91	28	22	28	22	1.99
11717131--11717183	26	2.0	26	88	0	79	28	18	22	30	1.98
11714460--11718051	904	4.0	901	85	3	4707	25	23	24	25	2.00
11718751--11718803	26	2.0	26	96	0	97	28	20	24	26	1.99
11718151--11724083	902	6.7	851	80	9	5338	25	23	24	26	2.00
11720497--11720549	26	2.0	26	89	7	81	28	22	24	24	2.00
11719004--11730491	887	12.9	900	74	12	7955	25	23	25	25	2.00
11722265--11722316	26	2.0	26	92	7	88	28	15	26	28	1.96
11723168--11723219	26	2.0	26	84	0	68	30	17	21	30	1.96
11719004--11724083	903	5.7	891	85	4	6132	25	23	25	26	2.00
11724203--11724255	26	2.0	26	88	0	79	26	24	22	26	2.00
11725099--11725151	26	2.0	26	92	0	88	28	20	24	26	1.99
11729386--11729438	26	2.0	26	92	0	88	26	16	26	30	1.97
11730286--11730338	26	2.0	26	92	0	88	26	18	28	26	1.98
11730465--11730543	26	3.0	26	100	0	158	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11730286--11730702	211	2.0	205	86	2	573	22	26	29	21	1.99
11731771--11731818	25	1.9	25	91	0	78	22	20	29	27	1.99
11732661--11732713	26	2.0	26	89	7	81	28	22	22	26	1.99
11733545--11733597	26	2.0	26	92	0	88	30	20	22	26	1.98
11731586--11739737	876	9.3	875	85	5	9957	25	24	24	24	2.00
11737921--11737974	26	2.1	26	96	0	99	25	18	27	27	1.98
11737047--11739719	895	3.0	889	86	6	3665	25	24	24	25	2.00
11741983--11742035	26	2.0	26	92	0	88	28	18	24	28	1.98
11743706--11743758	26	2.0	26	85	0	70	32	22	20	24	1.98
11741246--11744495	868	3.7	860	80	5	3521	25	23	23	26	2.00
11744607--11744663	26	2.2	26	90	0	87	28	17	22	31	1.97
11745830--11746166	159	2.1	159	87	2	471	21	27	29	20	1.98
11749170--11749222	26	2.0	26	96	0	97	28	20	24	26	1.99
11750921--11750973	26	2.0	26	96	0	97	28	20	24	26	1.99
11752687--11752739	26	2.0	26	96	0	97	28	20	24	26	1.99
11747134--11757581	872	11.9	896	84	5	12673	25	23	25	25	2.00
11753571--11753623	26	2.0	26	96	0	97	26	18	26	28	1.98
11756241--11756293	26	2.0	26	96	0	97	26	18	26	28	1.98
11758688--11758740	26	2.0	26	96	0	97	26	18	26	28	1.98
11759593--11759644	26	2.0	26	92	0	86	25	17	28	28	1.97
11757821--11764128	904	7.0	905	88	1	8736	25	24	25	25	2.00
11760499--11760550	26	2.0	26	92	0	86	25	17	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11761403--11761455	26	2.0	26	92	0	88	26	16	26	30	1.97
11763199--11763251	26	2.0	26	96	0	97	26	18	26	28	1.98
11764543--11764596	26	2.1	26	96	0	99	27	16	25	29	1.97
11766270--11766322	26	2.0	26	88	0	79	28	16	24	30	1.97
11767322--11767374	26	2.0	26	92	0	88	28	16	26	28	1.97
11767129--11767484	185	1.9	185	91	0	577	23	26	29	21	1.99
11767131--11767526	185	2.1	185	88	0	567	23	25	28	21	1.99
11768228--11768280	26	2.0	26	100	0	106	26	20	26	26	1.99
11770663--11770741	26	3.0	26	90	0	113	24	17	25	32	1.97
11771576--11771633	26	2.2	27	96	3	109	25	20	25	27	1.99
11772475--11772525	26	2.0	26	92	7	86	29	17	25	27	1.98
11773378--11773427	25	2.0	26	88	4	75	28	18	24	30	1.97
11769936--11776989	898	7.8	897	85	4	8629	25	23	24	26	2.00
11774220--11774265	17	2.7	17	93	0	74	21	36	23	17	1.94
11775183--11775235	26	2.0	26	96	0	97	26	18	24	30	1.98
11777681--11777733	26	2.0	26	85	7	72	32	15	22	30	1.94
11778579--11778631	26	2.0	26	92	0	88	28	18	24	28	1.98
11776960--11779940	898	3.3	897	86	4	4120	25	24	24	25	2.00
11779482--11779534	26	2.0	26	92	0	88	24	18	28	28	1.98
11780265--11780336	26	2.8	26	97	0	135	29	19	23	27	1.98
11781175--11781235	26	2.4	26	89	5	90	27	19	26	26	1.99
11779935--11782467	897	2.8	893	86	5	3424	24	24	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11783726--11783778	26	2.0	26	96	0	97	28	20	24	26	1.99
11786527--11786559	11	3.0	11	90	0	57	18	30	36	15	1.91
11788977--11789029	26	2.0	26	96	0	97	26	24	22	26	2.00
11788110--11804771	892	18.8	895	79	8	15913	25	24	24	25	2.00
11789871--11789923	26	2.0	26	88	0	79	26	20	24	28	1.99
11790777--11790829	26	2.0	26	100	0	106	26	26	20	26	1.99
11791647--11791698	26	2.0	26	100	0	104	26	23	19	30	1.98
11793357--11793409	26	2.0	26	100	0	106	30	26	16	26	1.97
11793527--11793578	26	2.0	26	84	0	68	28	21	17	32	1.96
11794243--11794295	26	2.0	26	100	0	106	26	26	20	26	1.99
11795101--11795152	26	2.0	26	92	0	86	26	23	19	30	1.98
11795996--11796048	26	2.0	26	100	0	106	26	26	20	26	1.99
11796887--11796938	26	2.0	26	84	0	68	26	28	17	26	1.97
11797784--11797833	26	1.9	26	91	0	82	24	24	22	30	1.99
11798677--11798729	26	2.0	26	92	0	88	28	22	20	28	1.99
11793723--11804771	896	12.4	894	84	5	13461	25	24	24	25	2.00
11799572--11799624	26	2.0	26	92	0	88	30	26	16	26	1.97
11800435--11800487	26	2.0	26	100	0	106	26	26	20	26	1.99
11802226--11802277	26	2.0	26	96	0	95	26	25	21	26	1.99
11803133--11803185	26	2.0	26	92	0	88	28	24	18	28	1.98
11805641--11805695	27	2.1	25	83	12	67	27	21	23	27	1.99
11804722--11811672	903	7.8	897	85	4	8654	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11807450--11807502	26	2.0	26	92	0	88	28	24	18	28	1.98
11804779--11815441	903	12.1	869	76	10	8165	25	24	24	25	2.00
11810966--11811018	26	2.0	26	100	0	106	26	26	20	26	1.99
11812694--11812746	26	2.0	26	88	0	79	26	20	22	30	1.98
11814496--11814547	26	2.0	26	92	0	86	28	25	17	28	1.97
11811689--11820035	902	9.2	900	74	11	6499	25	24	24	25	2.00
11815214--11815600	161	2.4	159	83	3	472	21	27	29	21	1.99
11818185--11818237	26	2.0	26	100	0	106	26	26	20	26	1.99
11819061--11819139	26	3.0	26	86	0	122	29	22	20	27	1.98
11819983--11820061	26	3.0	26	94	0	140	27	25	18	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190