genome.fa.s223.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  120  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18779667--18779711	21	2.1	21	87	0	63	15	24	4	55	1.59
18793503--18793540	15	2.5	15	91	0	67	36	15	15	31	1.90
18794171--18794195	3	8.3	3	100	0	50	64	0	0	36	0.94
18794937--18794999	32	2.0	32	84	3	83	31	4	14	49	1.64
18795986--18796033	24	2.0	23	84	11	62	37	2	4	56	1.30
18796965--18796996	16	2.0	16	100	0	64	43	25	12	18	1.85
18800420--18800449	2	15.0	2	100	0	60	50	0	0	50	1.00
18803341--18803365	8	3.1	8	100	0	50	48	0	0	52	1.00
18805913--18805963	19	2.7	20	81	9	61	21	9	7	60	1.53
18807236--18807307	24	3.0	24	85	4	101	33	12	22	31	1.91
18809384--18809439	23	2.4	23	84	0	76	46	8	8	35	1.67
18809613--18809647	17	2.1	16	89	5	52	71	0	0	28	0.86
18809611--18809648	15	2.7	14	80	11	51	73	0	0	26	0.83
18810523--18810560	20	1.9	20	88	0	58	13	5	15	65	1.43
18819351--18819393	23	2.0	22	86	9	61	18	6	4	69	1.29
18823246--18823281	19	1.9	19	88	5	56	25	5	27	41	1.77
18825929--18826350	225	1.9	225	93	1	738	38	11	14	36	1.82
18831209--18831242	12	2.6	13	90	9	52	20	26	0	52	1.46
18838641--18838683	10	4.4	10	77	16	54	44	9	6	39	1.64
18838642--18838685	19	2.3	19	84	7	54	43	6	6	43	1.57
18839229--18839266	9	4.2	9	80	12	51	86	2	0	10	0.66
18839229--18839292	17	3.6	17	79	12	67	81	4	3	10	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18842613--18842702	45	2.0	45	91	0	144	37	1	22	38	1.61
18843251--18843298	17	2.8	17	82	14	55	25	10	8	56	1.61
18847906--18848309	143	2.8	142	79	5	431	40	15	14	29	1.86
18848473--18848720	38	6.4	38	75	6	187	27	10	17	44	1.82
18848608--18848744	39	3.5	39	74	13	106	27	8	19	44	1.80
18848703--18848802	53	1.9	51	84	6	130	27	7	16	50	1.70
18852116--18852167	27	2.0	27	84	3	70	78	0	13	7	0.94
18854557--18854627	30	2.4	31	83	7	92	19	9	12	57	1.63
18857383--18857456	29	2.7	26	73	15	69	71	1	1	25	1.02
18857419--18857450	17	1.9	16	93	6	55	71	0	0	28	0.86
18859179--18859235	3	18.0	3	76	16	53	61	1	7	29	1.32
18859666--18859705	18	2.3	17	87	8	62	72	12	0	15	1.12
18864539--18864572	6	6.0	6	86	13	54	85	0	14	0	0.60
18864538--18864571	11	3.1	11	91	0	59	88	0	11	0	0.52
18865219--18865270	16	3.3	15	81	10	52	84	7	1	5	0.84
18865233--18865278	24	2.0	23	86	4	65	84	6	6	2	0.84
18865219--18865277	19	3.0	19	83	11	75	84	6	3	5	0.85
18865758--18865791	15	2.2	16	89	5	52	82	2	14	0	0.79
18865754--18865799	19	2.4	19	85	10	58	80	2	15	2	0.91
18866134--18866176	12	3.5	12	85	14	61	86	0	11	2	0.67
18866131--18866175	18	2.6	18	89	10	67	86	0	11	2	0.65
18866179--18866219	20	2.1	19	90	4	64	70	2	26	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18866510--18866618	17	6.2	17	69	19	64	68	2	3	24	1.19
18868124--18868157	15	2.2	16	89	5	52	50	5	0	44	1.26
18871578--18871631	13	4.0	13	78	7	54	74	1	18	5	1.11
18872571--18872692	29	4.1	29	80	9	129	29	18	20	31	1.96
18872571--18872687	60	1.9	61	85	1	164	28	18	20	32	1.96
18872867--18873181	34	9.5	34	74	8	202	36	19	15	28	1.93
18872892--18873089	64	3.0	66	78	8	215	37	19	13	29	1.90
18872948--18873052	32	3.3	32	80	5	106	35	21	13	29	1.92
18872984--18873060	32	2.4	32	84	0	109	31	23	14	31	1.94
18873301--18873523	34	6.7	35	74	10	119	33	17	17	31	1.93
18873364--18873523	33	4.8	35	74	15	115	35	18	16	30	1.92
18873827--18873866	21	1.9	21	84	0	53	27	22	22	27	1.99
18873935--18874026	33	2.8	33	81	1	114	39	20	14	26	1.90
18874118--18874185	35	1.9	35	82	5	84	14	10	22	52	1.71
18874218--18874273	5	11.0	5	82	17	71	78	21	0	0	0.75
18874215--18874273	25	2.3	27	86	13	81	77	22	0	0	0.76
18876126--18876166	3	13.7	3	100	0	82	31	0	0	68	0.90
18876418--18876489	15	4.8	15	77	13	76	25	2	23	48	1.64
18886235--18886304	30	2.3	29	81	16	81	20	5	27	47	1.72
18886235--18886304	15	4.7	15	77	10	72	20	5	27	47	1.72
18886240--18886327	45	2.0	45	81	4	106	22	5	30	40	1.77
18886693--18886733	13	3.3	13	86	6	50	12	2	2	82	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18886820--18886859	22	1.9	22	85	10	57	30	2	5	62	1.29
18886895--18887135	108	2.2	109	93	0	403	35	13	12	38	1.82
18888083--18888155	29	2.5	29	81	0	83	27	20	16	35	1.94
18888659--18888683	11	2.3	11	100	0	50	76	8	0	16	1.02
18889099--18889181	8	9.9	8	74	22	64	74	0	1	24	0.89
18889098--18889211	54	2.1	54	80	6	124	71	2	2	22	1.10
18892941--18892979	14	2.6	16	80	16	55	82	0	12	5	0.83
18892916--18892987	13	5.2	13	76	8	63	81	2	9	5	0.94
18895376--18895446	30	2.4	30	80	7	81	18	8	15	57	1.62
18901203--18901251	21	2.3	21	82	0	62	63	20	0	16	1.31
18906356--18906468	33	3.4	33	75	8	111	37	16	7	38	1.78
18927169--18927225	20	2.8	21	79	15	57	19	1	5	73	1.11
18933319--18933360	14	2.9	14	80	16	50	45	2	2	50	1.27
18933969--18934001	11	2.8	12	81	9	50	0	12	3	84	0.72
18944217--18944278	16	3.8	16	72	10	54	35	14	9	40	1.79
18948197--18948228	13	2.4	14	90	10	50	75	6	3	15	1.14
18950328--18950353	4	6.5	4	100	0	52	76	0	0	23	0.78
18952786--18952954	84	2.0	84	97	1	322	44	8	12	34	1.72
18961713--18961771	25	2.4	25	94	0	100	28	13	20	37	1.91
18964143--18964176	15	2.3	15	89	0	50	67	8	5	17	1.37
18964479--18964504	13	2.0	13	100	0	52	61	7	23	7	1.49
18965808--18965923	53	2.2	54	87	1	162	31	13	12	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18966416--18966481	30	2.2	30	91	0	105	60	1	9	28	1.36
18968753--18968808	28	2.0	29	82	3	69	55	0	7	37	1.27
18969181--18969209	11	2.5	12	94	5	51	0	6	3	89	0.57
18973182--18973318	59	2.3	59	81	10	156	58	21	2	17	1.52
18979056--18979097	22	1.9	22	95	0	75	47	0	7	45	1.30
18979937--18979999	28	2.3	28	86	2	83	60	3	1	34	1.22
18981298--18981365	29	2.3	30	87	7	102	50	0	4	45	1.22
18983447--18983476	15	2.0	15	93	0	51	56	6	0	36	1.26
18984291--18984415	62	2.0	62	96	3	234	32	3	19	44	1.66
18985183--18985232	10	5.1	10	78	4	57	54	2	2	42	1.23
18986803--18986849	25	1.9	25	82	4	60	42	36	4	17	1.68
19002770--19002840	18	3.7	19	71	17	67	47	0	1	50	1.09
19002782--19002834	18	2.8	19	82	5	72	50	0	1	47	1.12
19003349--19003388	22	1.9	20	85	10	53	62	0	12	25	1.30
19009849--19009888	2	20.0	2	89	0	62	5	50	0	45	1.23
19013658--19013687	6	4.8	6	95	4	51	80	0	16	3	0.85
19013867--19013910	5	8.0	6	80	19	60	86	0	0	13	0.57
19013867--19013909	16	2.6	17	89	10	72	88	0	0	11	0.52
19013867--19013908	22	2.0	21	90	4	66	88	0	0	11	0.53
19024353--19024412	29	2.1	28	84	9	77	50	8	13	28	1.70
19024357--19024414	24	2.5	24	78	13	59	51	6	13	27	1.66
19034447--19034481	17	2.1	16	89	5	52	22	2	11	62	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19044214--19044256	19	2.3	19	100	0	86	34	0	25	39	1.56
19046484--19046973	247	2.0	248	88	2	743	39	19	12	28	1.88
19048451--19048484	13	2.6	13	90	0	50	26	0	0	73	0.83
19049577--19049602	10	2.6	10	100	0	52	38	0	0	61	0.96
19049862--19049904	18	2.4	17	81	11	50	79	4	4	11	1.04
19061046--19061556	49	10.6	51	69	17	274	28	15	17	38	1.90
19060988--19061509	144	3.6	143	83	3	622	28	15	17	39	1.89
19061394--19061572	93	1.9	93	86	2	252	29	13	18	37	1.90
19061758--19061819	8	7.5	8	91	8	74	22	0	0	77	0.77
19061758--19061819	17	3.8	16	84	16	74	22	0	0	77	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190